CX297882

Overview
NameCX297882
Unique NameCX297882
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length731
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX297882 vs. ExPASy Swiss-Prot
Match: CP2R1_HUMAN (Vitamin D 25-hydroxylase OS=Homo sapiens GN=CYP2R1 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.923e-11
Identity = 37/130 (28.46%), Postives = 72/130 (55.38%), Query Frame = 3
Query:  171 IDHIIDAQMKGE------ITEENVIYIVENINVAAIETTLWSMEWAIAELVNHPEVQQKIRREISTVL--KGNPVTESNLHELPYLQAAVKEVLRLHTPIPLLVPHMNLEEAKLGGFTIPKESKIVVNAW 536
            +D  +D   +G+       ++EN+I+ V  + +A  ETT   + WAI  +  +P +Q ++++EI  ++   G P  +    ++PY +A + EVLR    +PL + H   E+A + G++IPK + ++ N +
Sbjct:  277 VDAYLDEMDQGKNDPSSTFSKENLIFSVGELIIAGTETTTNVLRWAILFMALYPNIQGQVQKEIDLIMGPNGKPSWDDKC-KMPYTEAVLHEVLRFCNIVPLGIFHATSEDAVVRGYSIPKGTTVITNLY 405          
BLAST of CX297882 vs. ExPASy Swiss-Prot
Match: C4D21_DROME (Probable cytochrome P450 4d21 OS=Drosophila melanogaster GN=Cyp4d21 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.923e-11
Identity = 47/166 (28.31%), Postives = 80/166 (48.19%), Query Frame = 3
Query:  204 EITEENVIYIVENINVAAIETTLWSMEWAIAELVNHPEVQQKIRREISTVLKGNP---VTESNLHELPYLQAAVKEVLRLHTPIPLLVPHMNLEEAKLGGFTIPKESKIVVNAWWLANNPXXXXXXXXXXXXXXXXXXCNIDAVAGGGKVDFRYLPFGVGRRSCPG 692
            +I EE  ++I      A  +TT   +  A+  +  HP+VQ+ I  E+ +VL  +P   VT++ L EL YL   +KE +RLH P+P+L  ++  E+ K+G  TIP  + I++  +++  +P                    +D           Y+PF  G ++C G
Sbjct:  305 DIREEVDVFIF-----AGDDTTTSGVSHALHAISRHPKVQECIYEELVSVLGPDPDASVTQTKLLELKYLDCVIKETMRLHPPVPILGRYIP-EDLKIGEITIPGNTSILLMPYYVYRDPEYFPDPLVFKPERW------MDMKTTSNTPPLAYIPFSSGPKNCIG 458          
BLAST of CX297882 vs. ExPASy Swiss-Prot
Match: C13A5_CAEEL (Putative cytochrome P450 CYP13A5 OS=Caenorhabditis elegans GN=cyp-13A5 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.923e-11
Identity = 44/173 (25.43%), Postives = 80/173 (46.24%), Query Frame = 3
Query:  189 AQMKGEITEENVIYIVENINVAAIETTLWSMEWAIAELVNHPEVQQKIRREISTVLKGNPVTESNLHELPYLQAAVKEVLRLHTPIPLLVPHMNLEEAKLGGFTIPKESKIVVNAWWLANNPXXXXXXXXXXXXXXXXXXCNIDAVAGGGKVDFRYLPFGVGRRSCPGIILAL 707
            A++  ++T + +I  +    +A  +TT  S+ ++   L  HPE+Q+K++ E+        VT   + +L Y++  VKE LR++    ++     ++E  + G  I K + + V+ W L  +P                    +    GG      YLPFG+G R C G+ LA+
Sbjct:  305 AKVDKQLTFDEIIGQLFVFLLAGYDTTALSLSYSSYLLARHPEIQKKLQEEVDRECPNPEVTFDQISKLKYMECVVKEALRMYPLASIVHNRKCMKETNVLGVQIEKGTNVQVDTWTLHYDPKVWGEDANEFRPERWESGDELFYAKGG------YLPFGMGPRICIGMRLAM 471          
BLAST of CX297882 vs. ExPASy Swiss-Prot
Match: CP2J5_MOUSE (Cytochrome P450 2J5 OS=Mus musculus GN=Cyp2j5 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.042e-11
Identity = 54/211 (25.59%), Postives = 93/211 (44.08%), Query Frame = 3
Query:   84 RLAFFNNNFVEKRRKIMAANGEKHKISC-AIDHIIDAQMKGEITEENVIYIVENINVAAIETTLWSMEWAIAELVNHPEVQQKIRREISTVL-KGNPVTESNLHELPYLQAAVKEVLRLHTPIPLLVPHMNLEEAKLGGFTIPKESKIVVNAWWLANNPXXXXXXXXXXXXXXXXXXCNIDAVAGGGKVDFR--YLPFGVGRRSCPGIILA 704
            +L  F ++ V+K  K    +  +  I    I+   D        EEN+I    ++ +   ETT  ++ WA+  + ++PE+Q+ ++ EI  V+     V+ S+   +PY  A + EV R+   +PL        + K  GF +PK + I+ N   L  +P                   N +     G+   R  +LPF +G+R+C G  LA
Sbjct:  253 KLKLFVSHIVKKHEKDWNPDEPRDFIDAFLIEMQKDPDRTTSFNEENLISTTLDLFLGGTETTSSTLRWALLYMSSYPEIQENVQAEIDRVIGHKRQVSLSDRESMPYTNAVIHEVQRMGNIVPLNSSREVTVDTKFNGFHLPKGTMILTNLTALHRDPKEWATPEVF----------NPEHFLENGQFKKRESFLPFSMGKRACLGEQLA 453          
BLAST of CX297882 vs. ExPASy Swiss-Prot
Match: CP19A_HORSE (Cytochrome P450 19A1 OS=Equus caballus GN=CYP19A1 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.042e-11
Identity = 49/199 (24.62%), Postives = 93/199 (46.73%), Query Frame = 3
Query:  114 EKRRKIMAANGEKHKISCAIDHIIDAQMKGEITEENVIYIVENINVAAIETTLWSMEWAIAELVNHPEVQQKIRREISTVLKGNPVTESNLHELPYLQAAVKEVLRLHTPIPLLVPHMNLEEAKLGGFTIPKESKIVVNAWWLANNPXXXXXXXXXXXXXXXXXXCNIDAVAGGGKVDFRYL-PFGVGRRSCPGIILAL 707
            EKR +I  A   +  +  A D I+ A+ +GE+T+ENV   +  + +AA +T   ++ + +  +  HP+V++ + +EI TVL    +   ++ +L  ++  + E +R + P+  +V    LE+  + G+ + K + I++N   +                                 V +RY  PFG G RSC G  +A+
Sbjct:  261 EKRHRIFTAEKLEDHVDFATDLIL-AEKRGELTKENVNQCILEMMIAAPDTLSVTVFFMLCLIAQHPKVEEALMKEIQTVLGERDLKNDDMQKLKVMENFINESMR-YQPVVDIVMRKALEDDVIDGYPVKKGTNIILNIGRMHKLEFFPKPNEFTLENFEK-------------NVPYRYFQPFGFGPRSCAGKFIAM 444          
BLAST of CX297882 vs. ExPASy Swiss-Prot
Match: C519B_DICDI (Probable cytochrome P450 519B1 OS=Dictyostelium discoideum GN=cyp519b1 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.042e-11
Identity = 51/185 (27.57%), Postives = 97/185 (52.43%), Query Frame = 3
Query:    3 GNYGDFIPLLRPFLRGYLNKCRDLQSRRLAFFNNNFVEKRRKIMAANGEKHKISCAIDHIIDAQMKGEITEENVIYIVENINVAAIETTLWSMEWAIAELVNHPEVQQKIRREISTVLKGNP--VTESNLHELPYLQAAVKEVLRLHTPIPLLVPHMNLEEAKL-GGFTIPKESKIVVNAWWLAN 548
            G   DF+  L PF   + NK    Q ++  F    F+E+       + + ++    +D +I A    E  +E VI +  +  +A  +T   + EW    L+N+P+VQ+K  +E+ +V+  +   VT +++   PY  + +KEV R+ +P PL +P +++++  L  G  IPK ++I++N + + N
Sbjct:  213 GKVDDFLWFLSPFFY-FSNK----QYKKYIFDIYYFMEEIYDQHLLDLDYNEPKDLLDQLIIASQGRE--KETVILVGMDFLLAGSDTQKATQEWFCLYLINNPDVQKKAYQELISVVGKDCKFVTSNHIENCPYFISIIKEVFRIRSPGPLGLPRISIDDTYLSNGMFIPKGTQILLNIFGMGN 390          
BLAST of CX297882 vs. ExPASy Swiss-Prot
Match: C513E_DICDI (Probable cytochrome P450 513E1 OS=Dictyostelium discoideum GN=cyp513e1 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.042e-11
Identity = 60/245 (24.49%), Postives = 112/245 (45.71%), Query Frame = 3
Query:   15 DFIPLLRPFLRG------YLNKCRDLQSRRLAFFNNNFVEKRRKIMA-ANGEKHKISCAIDHIIDAQMKGEITEENVIYIVENINVAAIETTLWSMEWAIAELVNHPEVQQKIRREISTVLKGNP------VTESNLHE--LPYLQAAVKEVLRLHTPIPLLVPHMNLEEAKLGGFTIPKESKIVVNAWWLANNPXXXXXXXXXXXXXXXXXXCNIDAVAGGGKVDFRYLPFGVGRRSCPGIILA 704
            DFIP+L+PF +       Y   C  L      + NN  ++K++K     + +       I  ++     G+I+  +V+    ++ +A +++T  S  + +  LVN+   Q+K+  EI   LK +       V   +L+   +PYL   +KEV RL++ I + +PH+  E+ ++ G+ I K ++I+ N +  + +                      + + GGG+ +   + FG G R C G  LA
Sbjct:  216 DFIPILKPFYKQNKFFKFYPILCDHLNKLIENYKNNKQLQKQQKQQQNEDDDDDDDGTIIGKLLKEYHNGKISWTSVVSTCVDVFLAGVDSTSNSTIFTLIALVNNSNCQEKLFNEIKNNLKKSDDGHDEIVIRHSLYRSSIPYLSLVMKEVYRLYSVILIGLPHITSEDVEIEGYKIAKGTQIIQNVF--STHLCEKTFPMSKSFIPERFIETGSNNMFGGGQTNL--VHFGTGVRDCVGKSLA 456          
The following BLAST results are available for this feature:
BLAST of CX297882 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 267
Match NameE-valueIdentityDescription
CP2R1_HUMAN6.923e-1128.46Vitamin D 25-hydroxylase OS=Homo sapiens GN=CYP2R1... [more]
C4D21_DROME6.923e-1128.31Probable cytochrome P450 4d21 OS=Drosophila melano... [more]
C13A5_CAEEL6.923e-1125.43Putative cytochrome P450 CYP13A5 OS=Caenorhabditis... [more]
CP2J5_MOUSE9.042e-1125.59Cytochrome P450 2J5 OS=Mus musculus GN=Cyp2j5 PE=2... [more]
CP19A_HORSE9.042e-1124.62Cytochrome P450 19A1 OS=Equus caballus GN=CYP19A1 ... [more]
C519B_DICDI9.042e-1127.57Probable cytochrome P450 519B1 OS=Dictyostelium di... [more]
C513E_DICDI9.042e-1124.49Probable cytochrome P450 513E1 OS=Dictyostelium di... [more]

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Properties
Property NameValue
Genbank descriptionC06006C03SK RindPdig24 Citrus clementina cDNA clone C06006C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297882 ID=CX297882; Name=CX297882; organism=Citrus clementina; type=EST; length=731bp
GAGGCAATTATGGAGATTTTATTCCTTTGCTCAGGCCATTTTTAAGAGGG
TACTTGAACAAGTGCAGAGACTTGCAGAGTAGGAGGTTGGCTTTCTTTAA
CAACAATTTTGTTGAGAAAAGAAGGAAAATCATGGCTGCCAATGGAGAGA
AGCACAAGATAAGCTGCGCCATTGATCACATAATTGATGCTCAAATGAAA
GGGGAGATCACTGAAGAAAATGTTATTTACATTGTTGAGAACATAAATGT
GGCGGCAATAGAAACAACACTATGGTCCATGGAATGGGCAATAGCTGAGT
TAGTCAATCACCCAGAGGTTCAACAGAAGATCCGTCGTGAAATCTCGACA
GTCCTTAAAGGAAATCCGGTCACAGAATCAAACCTGCATGAATTACCGTA
CCTGCAAGCCGCAGTAAAAGAGGTACTAAGATTACACACTCCAATTCCGT
TGTTGGTGCCACATATGAATCTAGAAGAAGCAAAACTTGGAGGCTTCACA
ATTCCTAAAGAGTCCAAAATTGTGGTGAATGCATGGTGGCTAGCAAACAA
CCCCAAATGGTGGGAAAAACCTGAGGAGTTTCGGCCAGAGAGATTCTTGG
AAGAGGAATGTAATATTGATGCTGTTGCTGGTGGTGGCAAAGTTGACTTC
AGGTACTTGCCTTTTGGCGTGGGAAGGCGAAGCTGCCCTGGAATCATACT
TGCATTACCAATCTGGGGCTTGTGATTGCAA
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