CX297897
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX297897 vs. ExPASy Swiss-Prot
Match: RS24_SPOFR (40S ribosomal protein S24 OS=Spodoptera frugiperda GN=RpS24 PE=2 SV=1) HSP 1 Score: 163.31 bits (412), Expect = 1.084e-39 Identity = 81/121 (66.94%), Postives = 97/121 (80.17%), Query Frame = 2 Query: 68 MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRG 430 M + TIRTRKFMTNRLL+RKQ V DVLHPG+ VSK E++EKLA+MY V P+ +FVF F+T+FGGGKSTGF LIYD++D AKKFEPK+RL R+GL K +RKQ KERKNR KK+RG Sbjct: 1 MTEGTATIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVT-PDVVFVFGFKTNFGGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKVRG 120
BLAST of CX297897 vs. ExPASy Swiss-Prot
Match: RS24_DICDI (40S ribosomal protein S24 OS=Dictyostelium discoideum GN=rps24 PE=3 SV=1) HSP 1 Score: 161.384 bits (407), Expect = 4.119e-39 Identity = 77/118 (65.25%), Postives = 97/118 (82.20%), Query Frame = 2 Query: 68 MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNRAKK 421 M AV +RTRK +TNRLLSRKQFV++V+HPG+ANVSK +LK +A+++ V DP +IF+F F+T FGGGKSTGFGLIYD+++ AKK+EPKYRL R GL TK + SRKQ KE+KNR KK Sbjct: 1 MDKAAVVVRTRKVLTNRLLSRKQFVVEVVHPGKANVSKKDLKTTIAKLHKVADPETIFLFGFKTDFGGGKSTGFGLIYDNLEIAKKYEPKYRLARAGLYTKPQTSRKQRKEKKNRLKK 118
BLAST of CX297897 vs. ExPASy Swiss-Prot
Match: RS24_ICTPU (40S ribosomal protein S24 OS=Ictalurus punctatus GN=rps24 PE=2 SV=1) HSP 1 Score: 160.229 bits (404), Expect = 9.176e-39 Identity = 78/117 (66.67%), Postives = 95/117 (81.20%), Query Frame = 2 Query: 80 AVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRG 430 +VT+RTRKFMTNRLL RKQ V+DVLHPG+A V K E++EKLA+MY P+ +FVF F+T FGGGK+TGF ++YDS+D AKK EPKYRL R+GL K + SRKQ KERKNR KK+RG Sbjct: 4 SVTLRTRKFMTNRLLQRKQMVLDVLHPGKATVPKTEIREKLAKMYKTT-PDVVFVFGFKTQFGGGKTTGFAMVYDSLDYAKKNEPKYRLARHGLYEKKKTSRKQRKERKNRMKKVRG 119
BLAST of CX297897 vs. ExPASy Swiss-Prot
Match: RS24_TAKRU (40S ribosomal protein S24 OS=Takifugu rubripes GN=rps24 PE=3 SV=1) HSP 1 Score: 159.844 bits (403), Expect = 1.198e-38 Identity = 78/116 (67.24%), Postives = 94/116 (81.03%), Query Frame = 2 Query: 83 VTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRG 430 VT+RTRKFMTNRLL RKQ V+DVLHPG+A V K E++EKLA+MY P+ +FVF FRT FGGGK+TGF ++YDS+D AKK EPK+RL R+GL K + SRKQ KERKNR KK+RG Sbjct: 5 VTVRTRKFMTNRLLQRKQMVVDVLHPGKATVPKTEIREKLAKMYKTT-PDVVFVFGFRTQFGGGKTTGFAMVYDSLDYAKKNEPKHRLARHGLFEKKKTSRKQRKERKNRMKKVRG 119
BLAST of CX297897 vs. ExPASy Swiss-Prot
Match: RS24_RHIRA (40S ribosomal protein S24 OS=Rhizomucor racemosus GN=RPS24 PE=3 SV=1) HSP 1 Score: 155.606 bits (392), Expect = 2.260e-37 Identity = 77/121 (63.64%), Postives = 93/121 (76.86%), Query Frame = 2 Query: 71 ADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGV 433 AD AVTIRTRKF+TNRLL RKQ V+DV+HPG ANVSK EL+ K+ +MY D + VF F+THFGGGK+TGF LIYD+V++ K FEPK+RL+R GL + RKQ KE+KNR KK RGV Sbjct: 20 ADAAVTIRTRKFLTNRLLQRKQMVVDVIHPGLANVSKDELRSKIGKMYKA-DKEVVSVFGFKTHFGGGKTTGFALIYDNVEALKNFEPKHRLVRIGLAEAPKGGRKQRKEKKNREKKFRGV 139
BLAST of CX297897 vs. ExPASy Swiss-Prot
Match: RS24_ORYLA (40S ribosomal protein S24 OS=Oryzias latipes GN=rps24 PE=2 SV=1) HSP 1 Score: 152.91 bits (385), Expect = 1.465e-36 Identity = 75/117 (64.10%), Postives = 92/117 (78.63%), Query Frame = 2 Query: 83 VTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGV 433 VTIRTRKFMTNRLL RKQ V+DVLHPG+A V K E++EKLA+MY P+ +FVF FRT FGGGK+TGF ++YDS+D AKK EPK+RL +GL K + SRKQ ER+NR KK+R + Sbjct: 5 VTIRTRKFMTNRLLQRKQMVVDVLHPGKATVPKTEIREKLAKMYKTT-PDVVFVFGFRTQFGGGKTTGFAMVYDSLDYAKKNEPKHRLATHGLYEKKKTSRKQRTERQNRMKKVRSI 120
BLAST of CX297897 vs. ExPASy Swiss-Prot
Match: RS24B_SCHPO (40S ribosomal protein S24-B OS=Schizosaccharomyces pombe GN=rps24b PE=2 SV=3) HSP 1 Score: 150.984 bits (380), Expect = 5.567e-36 Identity = 75/119 (63.03%), Postives = 93/119 (78.15%), Query Frame = 2 Query: 77 KAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEK-SRKQMKERKNRAKKIRG 430 +AVTIRTRKFMTNRLL RKQ V+D+LHPG+AN+SK E++EKLA+MY D + F RTHFGGG+STGF LIYDS +S KKFEP YRL+R G ++K +R+Q K+RKNR KK+ G Sbjct: 3 EAVTIRTRKFMTNRLLQRKQMVVDILHPGKANLSKNEIREKLAQMYKT-DSECVQAFGLRTHFGGGRSTGFALIYDSTESMKKFEPHYRLVRVGQAEPIQKVARQQRKQRKNRGKKVFG 120
BLAST of CX297897 vs. ExPASy Swiss-Prot
Match: RS24_YEAST (40S ribosomal protein S24 OS=Saccharomyces cerevisiae GN=RPS24A PE=1 SV=3) HSP 1 Score: 150.599 bits (379), Expect = 7.270e-36 Identity = 79/118 (66.95%), Postives = 95/118 (80.51%), Query Frame = 2 Query: 80 AVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEK-SRKQMKERKNRAKKIRG 430 AVTIRTRK ++N LL+RKQFV+DVLHP RANVSK EL+EKLA +Y + +++ VF FRT FGGGKS GFGL+Y+SV AKKFEP YRL+R GL KVEK SR+Q K++KNR KKI G Sbjct: 4 AVTIRTRKVISNPLLARKQFVVDVLHPNRANVSKDELREKLAEVYKA-EKDAVSVFGFRTQFGGGKSVGFGLVYNSVAEAKKFEPTYRLVRYGLAEKVEKASRQQRKQKKNRDKKIFG 120
BLAST of CX297897 vs. ExPASy Swiss-Prot
Match: RS24A_SCHPO (40S ribosomal protein S24-A OS=Schizosaccharomyces pombe GN=rps24a PE=2 SV=3) HSP 1 Score: 147.132 bits (370), Expect = 8.038e-35 Identity = 71/119 (59.66%), Postives = 94/119 (78.99%), Query Frame = 2 Query: 77 KAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEK-SRKQMKERKNRAKKIRG 430 +AVTIRTRKFMTNRLL RKQ V+D+LHPG+AN+SK +L+EKL +MY D +++ F RTH+GGG++TGF LIYD V++ KKFEP YRL+R G ++K +R+Q K+RKNR KK+ G Sbjct: 3 EAVTIRTRKFMTNRLLQRKQMVVDILHPGKANISKNDLREKLGQMYKT-DASAVQAFGLRTHYGGGRTTGFALIYDDVEAMKKFEPHYRLVRVGHAEPIQKVARQQRKQRKNRGKKVFG 120 The following BLAST results are available for this feature:
BLAST of CX297897 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 19
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Sequences
The
following sequences are available for this feature:
EST sequence >CX297897 ID=CX297897; Name=CX297897; organism=Citrus clementina; type=EST; length=685bpback to top |