CX297897

Overview
NameCX297897
Unique NameCX297897
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length685
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX297897 vs. ExPASy Swiss-Prot
Match: RS24_SPOFR (40S ribosomal protein S24 OS=Spodoptera frugiperda GN=RpS24 PE=2 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.084e-39
Identity = 81/121 (66.94%), Postives = 97/121 (80.17%), Query Frame = 2
Query:   68 MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRG 430
            M +   TIRTRKFMTNRLL+RKQ V DVLHPG+  VSK E++EKLA+MY V  P+ +FVF F+T+FGGGKSTGF LIYD++D AKKFEPK+RL R+GL  K   +RKQ KERKNR KK+RG
Sbjct:    1 MTEGTATIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVT-PDVVFVFGFKTNFGGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKVRG 120          
BLAST of CX297897 vs. ExPASy Swiss-Prot
Match: RS24_DICDI (40S ribosomal protein S24 OS=Dictyostelium discoideum GN=rps24 PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 4.119e-39
Identity = 77/118 (65.25%), Postives = 97/118 (82.20%), Query Frame = 2
Query:   68 MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNRAKK 421
            M   AV +RTRK +TNRLLSRKQFV++V+HPG+ANVSK +LK  +A+++ V DP +IF+F F+T FGGGKSTGFGLIYD+++ AKK+EPKYRL R GL TK + SRKQ KE+KNR KK
Sbjct:    1 MDKAAVVVRTRKVLTNRLLSRKQFVVEVVHPGKANVSKKDLKTTIAKLHKVADPETIFLFGFKTDFGGGKSTGFGLIYDNLEIAKKYEPKYRLARAGLYTKPQTSRKQRKEKKNRLKK 118          
BLAST of CX297897 vs. ExPASy Swiss-Prot
Match: RS24_ICTPU (40S ribosomal protein S24 OS=Ictalurus punctatus GN=rps24 PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 9.176e-39
Identity = 78/117 (66.67%), Postives = 95/117 (81.20%), Query Frame = 2
Query:   80 AVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRG 430
            +VT+RTRKFMTNRLL RKQ V+DVLHPG+A V K E++EKLA+MY    P+ +FVF F+T FGGGK+TGF ++YDS+D AKK EPKYRL R+GL  K + SRKQ KERKNR KK+RG
Sbjct:    4 SVTLRTRKFMTNRLLQRKQMVLDVLHPGKATVPKTEIREKLAKMYKTT-PDVVFVFGFKTQFGGGKTTGFAMVYDSLDYAKKNEPKYRLARHGLYEKKKTSRKQRKERKNRMKKVRG 119          
BLAST of CX297897 vs. ExPASy Swiss-Prot
Match: RS24_TAKRU (40S ribosomal protein S24 OS=Takifugu rubripes GN=rps24 PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.198e-38
Identity = 78/116 (67.24%), Postives = 94/116 (81.03%), Query Frame = 2
Query:   83 VTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRG 430
            VT+RTRKFMTNRLL RKQ V+DVLHPG+A V K E++EKLA+MY    P+ +FVF FRT FGGGK+TGF ++YDS+D AKK EPK+RL R+GL  K + SRKQ KERKNR KK+RG
Sbjct:    5 VTVRTRKFMTNRLLQRKQMVVDVLHPGKATVPKTEIREKLAKMYKTT-PDVVFVFGFRTQFGGGKTTGFAMVYDSLDYAKKNEPKHRLARHGLFEKKKTSRKQRKERKNRMKKVRG 119          
BLAST of CX297897 vs. ExPASy Swiss-Prot
Match: RS24_RHIRA (40S ribosomal protein S24 OS=Rhizomucor racemosus GN=RPS24 PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.260e-37
Identity = 77/121 (63.64%), Postives = 93/121 (76.86%), Query Frame = 2
Query:   71 ADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGV 433
            AD AVTIRTRKF+TNRLL RKQ V+DV+HPG ANVSK EL+ K+ +MY   D   + VF F+THFGGGK+TGF LIYD+V++ K FEPK+RL+R GL    +  RKQ KE+KNR KK RGV
Sbjct:   20 ADAAVTIRTRKFLTNRLLQRKQMVVDVIHPGLANVSKDELRSKIGKMYKA-DKEVVSVFGFKTHFGGGKTTGFALIYDNVEALKNFEPKHRLVRIGLAEAPKGGRKQRKEKKNREKKFRGV 139          
BLAST of CX297897 vs. ExPASy Swiss-Prot
Match: RS24_ORYLA (40S ribosomal protein S24 OS=Oryzias latipes GN=rps24 PE=2 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.465e-36
Identity = 75/117 (64.10%), Postives = 92/117 (78.63%), Query Frame = 2
Query:   83 VTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGV 433
            VTIRTRKFMTNRLL RKQ V+DVLHPG+A V K E++EKLA+MY    P+ +FVF FRT FGGGK+TGF ++YDS+D AKK EPK+RL  +GL  K + SRKQ  ER+NR KK+R +
Sbjct:    5 VTIRTRKFMTNRLLQRKQMVVDVLHPGKATVPKTEIREKLAKMYKTT-PDVVFVFGFRTQFGGGKTTGFAMVYDSLDYAKKNEPKHRLATHGLYEKKKTSRKQRTERQNRMKKVRSI 120          
BLAST of CX297897 vs. ExPASy Swiss-Prot
Match: RS24B_SCHPO (40S ribosomal protein S24-B OS=Schizosaccharomyces pombe GN=rps24b PE=2 SV=3)

HSP 1 Score: 150.984 bits (380), Expect = 5.567e-36
Identity = 75/119 (63.03%), Postives = 93/119 (78.15%), Query Frame = 2
Query:   77 KAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEK-SRKQMKERKNRAKKIRG 430
            +AVTIRTRKFMTNRLL RKQ V+D+LHPG+AN+SK E++EKLA+MY   D   +  F  RTHFGGG+STGF LIYDS +S KKFEP YRL+R G    ++K +R+Q K+RKNR KK+ G
Sbjct:    3 EAVTIRTRKFMTNRLLQRKQMVVDILHPGKANLSKNEIREKLAQMYKT-DSECVQAFGLRTHFGGGRSTGFALIYDSTESMKKFEPHYRLVRVGQAEPIQKVARQQRKQRKNRGKKVFG 120          
BLAST of CX297897 vs. ExPASy Swiss-Prot
Match: RS24_YEAST (40S ribosomal protein S24 OS=Saccharomyces cerevisiae GN=RPS24A PE=1 SV=3)

HSP 1 Score: 150.599 bits (379), Expect = 7.270e-36
Identity = 79/118 (66.95%), Postives = 95/118 (80.51%), Query Frame = 2
Query:   80 AVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEK-SRKQMKERKNRAKKIRG 430
            AVTIRTRK ++N LL+RKQFV+DVLHP RANVSK EL+EKLA +Y   + +++ VF FRT FGGGKS GFGL+Y+SV  AKKFEP YRL+R GL  KVEK SR+Q K++KNR KKI G
Sbjct:    4 AVTIRTRKVISNPLLARKQFVVDVLHPNRANVSKDELREKLAEVYKA-EKDAVSVFGFRTQFGGGKSVGFGLVYNSVAEAKKFEPTYRLVRYGLAEKVEKASRQQRKQKKNRDKKIFG 120          
BLAST of CX297897 vs. ExPASy Swiss-Prot
Match: RS24A_SCHPO (40S ribosomal protein S24-A OS=Schizosaccharomyces pombe GN=rps24a PE=2 SV=3)

HSP 1 Score: 147.132 bits (370), Expect = 8.038e-35
Identity = 71/119 (59.66%), Postives = 94/119 (78.99%), Query Frame = 2
Query:   77 KAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEK-SRKQMKERKNRAKKIRG 430
            +AVTIRTRKFMTNRLL RKQ V+D+LHPG+AN+SK +L+EKL +MY   D +++  F  RTH+GGG++TGF LIYD V++ KKFEP YRL+R G    ++K +R+Q K+RKNR KK+ G
Sbjct:    3 EAVTIRTRKFMTNRLLQRKQMVVDILHPGKANISKNDLREKLGQMYKT-DASAVQAFGLRTHYGGGRTTGFALIYDDVEAMKKFEPHYRLVRVGHAEPIQKVARQQRKQRKNRGKKVFG 120          
The following BLAST results are available for this feature:
BLAST of CX297897 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
RS24_SPOFR1.084e-3966.9440S ribosomal protein S24 OS=Spodoptera frugiperda... [more]
RS24_DICDI4.119e-3965.2540S ribosomal protein S24 OS=Dictyostelium discoid... [more]
RS24_ICTPU9.176e-3966.6740S ribosomal protein S24 OS=Ictalurus punctatus G... [more]
RS24_TAKRU1.198e-3867.2440S ribosomal protein S24 OS=Takifugu rubripes GN=... [more]
RS24_RHIRA2.260e-3763.6440S ribosomal protein S24 OS=Rhizomucor racemosus ... [more]
RS24_ORYLA1.465e-3664.1040S ribosomal protein S24 OS=Oryzias latipes GN=rp... [more]
RS24B_SCHPO5.567e-3663.0340S ribosomal protein S24-B OS=Schizosaccharomyces... [more]
RS24_YEAST7.270e-3666.9540S ribosomal protein S24 OS=Saccharomyces cerevis... [more]
RS24A_SCHPO8.038e-3559.6640S ribosomal protein S24-A OS=Schizosaccharomyces... [more]

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Properties
Property NameValue
Genbank descriptionC06006D07SK RindPdig24 Citrus clementina cDNA clone C06006D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297897 ID=CX297897; Name=CX297897; organism=Citrus clementina; type=EST; length=685bp
ATTGCCTAGTCGCGCCTCTCGTGCTATATCTTTGTCGAGGATTCAGCAGA
CTTTTAACCAACCAACAATGGCGGACAAGGCTGTCACCATTCGAACTAGG
AAGTTCATGACCAACCGTCTCCTTTCCAGGAAGCAATTCGTTATTGATGT
TCTTCATCCTGGCAGGGCCAATGTTTCCAAGGCTGAGTTGAAGGAGAAGT
TGGCAAGGATGTATGATGTGAAGGACCCCAACTCAATCTTTGTTTTTAAG
TTTCGAACTCACTTTGGAGGTGGGAAATCTACCGGCTTTGGTCTGATCTA
TGATTCAGTTGACAGTGCTAAGAAGTTTGAGCCCAAGTACAGGCTTATCA
GGAATGGACTTGATACCAAGGTAGAGAAGTCAAGGAAGCAGATGAAGGAA
AGGAAGAACAGGGCTAAGAAGATCCGTGGTGTAAAGAAGACCAAGGCCTC
AGATGCTGCCAAGAAGAAGTGAGCAATTGGAGATTCTTCTGTAGTCTCGA
AGCCAATTTTCTGTGATGGAGTTTCTATAATAGTCTTTTTTTTTTTTGGG
TTTAGTTCCTGAAATGAAATCTAGTGTGTTGTGGATTTTGGTGCCATTGG
ATGTTTAGTTATATTTGCAGATTTTGAGTACTCCCCAAAAGACATTTTTG
AGTATTGAATGGCAATACATTCGTCTTTAACCCTG
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