CX297929

Overview
NameCX297929
Unique NameCX297929
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length731
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX297929 vs. ExPASy Swiss-Prot
Match: RRF_LISMC (Ribosome-recycling factor OS=Listeria monocytogenes serotype 4b (strain Clip81459) GN=frr PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.178e-12
Identity = 33/46 (71.74%), Postives = 39/46 (84.78%), Query Frame = 1
Query:    7 LLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERR 144
            LLI PYDK+ L  IEKAI+ SDLG+TPNNDG V+RL++PQLT ERR
Sbjct:   65 LLITPYDKTILGEIEKAILKSDLGLTPNNDGSVLRLSIPQLTEERR 110          
BLAST of CX297929 vs. ExPASy Swiss-Prot
Match: RRF_LISIN (Ribosome-recycling factor OS=Listeria innocua GN=frr PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.178e-12
Identity = 33/46 (71.74%), Postives = 39/46 (84.78%), Query Frame = 1
Query:    7 LLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERR 144
            LLI PYDK+ L  IEKAI+ SDLG+TPNNDG V+RL++PQLT ERR
Sbjct:   65 LLITPYDKTILGEIEKAILKSDLGLTPNNDGSVLRLSIPQLTEERR 110          
BLAST of CX297929 vs. ExPASy Swiss-Prot
Match: RRF_GEOTN (Ribosome-recycling factor OS=Geobacillus thermodenitrificans (strain NG80-2) GN=frr PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.395e-11
Identity = 32/46 (69.57%), Postives = 40/46 (86.96%), Query Frame = 1
Query:    7 LLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERR 144
            L+IQPYDKS +K +EKAI++SDLG+TP+NDG VIRL +P LT ERR
Sbjct:   65 LVIQPYDKSVIKEMEKAILASDLGVTPSNDGSVIRLVIPPLTEERR 110          
BLAST of CX297929 vs. ExPASy Swiss-Prot
Match: RRF_CLOK5 (Ribosome-recycling factor OS=Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680) GN=frr PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.822e-11
Identity = 32/46 (69.57%), Postives = 40/46 (86.96%), Query Frame = 1
Query:    7 LLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERR 144
            L IQP+DKS+LKSIEKAI+ SDLG+ P+NDGE+IRL +P+LT E R
Sbjct:   65 LAIQPWDKSALKSIEKAILKSDLGINPSNDGEIIRLIIPELTEETR 110          
BLAST of CX297929 vs. ExPASy Swiss-Prot
Match: RRF_CLOK1 (Ribosome-recycling factor OS=Clostridium kluyveri (strain NBRC 12016) GN=frr PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.822e-11
Identity = 32/46 (69.57%), Postives = 40/46 (86.96%), Query Frame = 1
Query:    7 LLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERR 144
            L IQP+DKS+LKSIEKAI+ SDLG+ P+NDGE+IRL +P+LT E R
Sbjct:   65 LAIQPWDKSALKSIEKAILKSDLGINPSNDGEIIRLIIPELTEETR 110          
BLAST of CX297929 vs. ExPASy Swiss-Prot
Match: RRF_SYNP2 (Ribosome-recycling factor OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=frr PE=3 SV=1)

HSP 1 Score: 63.5438 bits (153), Expect = 2.189e-11
Identity = 28/46 (60.87%), Postives = 36/46 (78.26%), Query Frame = 1
Query:    7 LLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERR 144
            ++IQP+D+ SL  +E+AI  SDLG+TPNNDG  IRL +P LT ERR
Sbjct:   62 IMIQPFDRGSLSDVERAISMSDLGLTPNNDGTNIRLNIPPLTKERR 107          

HSP 2 Score: 25.7942 bits (55), Expect = 2.189e-11
Identity = 11/20 (55.00%), Postives = 14/20 (70.00%), Query Frame = 3
Query:  135 RKEELSKVVAKQAEEGKVVM 194
            R++EL K   K AEEGKV +
Sbjct:  106 RRQELVKTAGKLAEEGKVAL 125          
BLAST of CX297929 vs. ExPASy Swiss-Prot
Match: RRF_MICAN (Ribosome-recycling factor OS=Microcystis aeruginosa (strain NIES-843) GN=frr PE=3 SV=1)

HSP 1 Score: 62.3882 bits (150), Expect = 2.189e-11
Identity = 27/46 (58.70%), Postives = 39/46 (84.78%), Query Frame = 1
Query:    7 LLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERR 144
            + IQP+D++S+ +IEKAI  SD+G+TP+NDG+ IRL +P LTS+RR
Sbjct:   62 IAIQPFDRTSMGAIEKAISLSDVGLTPSNDGQTIRLNIPPLTSDRR 107          

HSP 2 Score: 26.9498 bits (58), Expect = 2.189e-11
Identity = 12/20 (60.00%), Postives = 16/20 (80.00%), Query Frame = 3
Query:  135 RKEELSKVVAKQAEEGKVVM 194
            R++EL K+ AK AEEGKV +
Sbjct:  106 RRKELVKLAAKLAEEGKVAI 125          
BLAST of CX297929 vs. ExPASy Swiss-Prot
Match: RRF_THEEB (Ribosome-recycling factor OS=Thermosynechococcus elongatus (strain BP-1) GN=frr PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.379e-11
Identity = 32/46 (69.57%), Postives = 39/46 (84.78%), Query Frame = 1
Query:    7 LLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERR 144
            +LIQPYD+S+L SIEKAI  SDLG+TPNNDG  +RL +P LT+ERR
Sbjct:   62 ILIQPYDRSTLASIEKAIQLSDLGLTPNNDGSSVRLNIPPLTTERR 107          
BLAST of CX297929 vs. ExPASy Swiss-Prot
Match: RRF_LACDB (Ribosome-recycling factor OS=Lactobacillus delbrueckii subsp. bulgaricus (strain ATCC BAA-365) GN=frr PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.379e-11
Identity = 33/46 (71.74%), Postives = 38/46 (82.61%), Query Frame = 1
Query:    7 LLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERR 144
            L+I PYDKSSL  IE AI++SDLG+TP NDG VIRL +PQLT ERR
Sbjct:   65 LMITPYDKSSLNDIEHAILASDLGLTPANDGNVIRLIIPQLTGERR 110          
BLAST of CX297929 vs. ExPASy Swiss-Prot
Match: RRF_CYAA5 (Ribosome-recycling factor OS=Cyanothece sp. (strain ATCC 51142) GN=frr PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.108e-11
Identity = 31/46 (67.39%), Postives = 38/46 (82.61%), Query Frame = 1
Query:    7 LLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERR 144
            ++IQPYDK S+  IEKAI  SD+G+TPNNDG+VIRL +P LT ERR
Sbjct:   62 IMIQPYDKGSMGQIEKAIQMSDVGLTPNNDGQVIRLNIPPLTEERR 107          
The following BLAST results are available for this feature:
BLAST of CX297929 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
RRF_LISMC8.178e-1271.74Ribosome-recycling factor OS=Listeria monocytogene... [more]
RRF_LISIN8.178e-1271.74Ribosome-recycling factor OS=Listeria innocua GN=f... [more]
RRF_GEOTN1.395e-1169.57Ribosome-recycling factor OS=Geobacillus thermoden... [more]
RRF_CLOK51.822e-1169.57Ribosome-recycling factor OS=Clostridium kluyveri ... [more]
RRF_CLOK11.822e-1169.57Ribosome-recycling factor OS=Clostridium kluyveri ... [more]
RRF_SYNP22.189e-1160.87Ribosome-recycling factor OS=Synechococcus sp. (st... [more]
RRF_MICAN2.189e-1158.70Ribosome-recycling factor OS=Microcystis aeruginos... [more]
RRF_THEEB2.379e-1169.57Ribosome-recycling factor OS=Thermosynechococcus e... [more]
RRF_LACDB2.379e-1171.74Ribosome-recycling factor OS=Lactobacillus delbrue... [more]
RRF_CYAA53.108e-1167.39Ribosome-recycling factor OS=Cyanothece sp. (strai... [more]

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Properties
Property NameValue
Genbank descriptionC06006G03SK RindPdig24 Citrus clementina cDNA clone C06006G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297929 ID=CX297929; Name=CX297929; organism=Citrus clementina; type=EST; length=731bp
GAGGCTCTATTGATTCAACCATATGACAAATCCAGCTTAAAGTCTATAGA
GAAGGCCATAGTAAGCTCTGATCTTGGCATGACCCCAAACAATGATGGTG
AAGTCATACGGTTAACCCTTCCTCAATTGACATCCGAAAGGAGGAACTGT
CAAAGGTTGTGGCCAAACAGGCTGAAGAAGGGAAGGTAGTTATGCTTCTT
TTATTCACGATTTCATAGGTTTCTTCTCCTCTTTGTAATCTATCTAATAC
TAAAGTTCAGATTTTCATTATCTTTTCAGTGCTTATAATTTTCATGAAGG
TAGATATCACAGGAAATCTGTACAAGACGGTGTTTTCTAAATTAAAGAAG
TTTTTGGTCTAAAATTTATAGTTTGCTTTGACGAATGTAAAGGTATTGGC
ATGAAATACTTTAAATTACTTTGAGAGGAGTTTCATTGTGGTTTATCAGG
GTACTAAGTCATAACCTGAGTACATGGATTTTAAAGTTGCATGTGTTGGT
TAATTTTTATACACAAATCTCTGTGTTTACTGATATAAATTCCCCGGTTT
TGTCATCTTTGCTGCACTGCCCCCATCAATCATTTGCAGGTGGCAGTTAG
GAATATAAGAAGAGATGCGTTAAAAGCTTATGAAAAACTTCAGAAGGAGA
AGAAGCTCTCTGAAGACAATGTGAAAGGACTTGTCAGTGATTTACAGAAA
ACTACAGATGAGTATATGAAGAAGATTGATA
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