CX298054

Overview
NameCX298054
Unique NameCX298054
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length642
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX298054 vs. ExPASy Swiss-Prot
Match: UBIE_RHOS5 (Ubiquinone/menaquinone biosynthesis methyltransferase ubiE OS=Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) GN=ubiE PE=3 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 7.056e-51
Identity = 110/212 (51.89%), Postives = 138/212 (65.09%), Query Frame = 2
Query:    5 LVSHVFSSVAKNYDLMNDLMSGGLHRLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYQDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIGELVAGDRGSYQYLVESVRRFPPQ 640
            +V  VF+ VA  YD+MNDLMSGG+HRLWKD ++  L P PG K LDVAGGTGD++FR L       +RA                VCD+  +ML  G++RA      D+ L WV GDA AL F  +T D YTI+FGIRNVT ++ AL EA+RVLK GGR + LE S +  P  +  YD YSF+VIP +G++VA DR SYQYLVES+R+FP Q
Sbjct:   24 MVHGVFTRVASKYDIMNDLMSGGIHRLWKDAMMDWLAPRPGQKLLDVAGGTGDISFRFL-------KRA----------PGAHATVCDMTESMLVEGRQRADAAQMADR-LDWVVGDAMALPFASNTFDVYTISFGIRNVTRVQDALNEAFRVLKPGGRLMVLEFSQLPNPAMQWAYDRYSFNVIPVMGQIVANDRDSYQYLVESIRKFPDQ 217          
BLAST of CX298054 vs. ExPASy Swiss-Prot
Match: UBIE_DINSH (Ubiquinone/menaquinone biosynthesis methyltransferase ubiE OS=Dinoroseobacter shibae (strain DFL 12) GN=ubiE PE=3 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 1.204e-50
Identity = 111/212 (52.36%), Postives = 138/212 (65.09%), Query Frame = 2
Query:    5 LVSHVFSSVAKNYDLMNDLMSGGLHRLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYQDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIGELVAGDRGSYQYLVESVRRFPPQ 640
            LV  VF++VA  YD+MNDLMSGGLHR+WKD ++  L P    + LDVAGGTGD+AFR L       +RA           E    V D+  +ML  G++RA E    D  L W+ GDA AL F D++ D YTI+FGIRNVT I  ALAEAYRVL+ GGR + LE S +  P  ++ YD YSF+VIP +G++V  DR SYQYLVES+RRFP Q
Sbjct:   24 LVQGVFTNVASKYDIMNDLMSGGLHRVWKDAMMDWLAPRAAQRLLDVAGGTGDIAFRFL-------KRA----------PEAEAVVLDLTESMLIAGRQRA-EAEALDARLNWLVGDAMALPFADNSFDVYTISFGIRNVTRIPDALAEAYRVLRPGGRLMVLEFSQLPNPGLQKAYDLYSFNVIPPMGKVVTNDRDSYQYLVESIRRFPDQ 217          
BLAST of CX298054 vs. ExPASy Swiss-Prot
Match: UBIE_RHISN (Ubiquinone/menaquinone biosynthesis methyltransferase ubiE OS=Rhizobium sp. (strain NGR234) GN=ubiE PE=3 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 5.974e-50
Identity = 111/214 (51.87%), Postives = 141/214 (65.89%), Query Frame = 2
Query:    5 LVSHVFSSVAKNYDLMNDLMSGGLHRLWKDRLVSKLNP--FPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYQDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIGELVAGDRGSYQYLVESVRRFPPQ 640
            LV+ VF  VAK YD+MND+MS GLHR+WKD +++ LNP      + LDVAGGTGD+AFRI++      R+A   VL             DIN +ML VG +RA ++G    +L +VE +AE L F  ++ D YTIAFGIRNV  IE AL EAYRVLKRGGR L LE S V++P+    YD +SF+ IP  G+L+ GD   YQYLVES+R+FP Q
Sbjct:   29 LVNDVFHKVAKRYDVMNDVMSAGLHRVWKDAMIAALNPPRRENYRVLDVAGGTGDIAFRIVEASG---RKAHATVL-------------DINGSMLAVGAERARKKGLLG-NLEFVEANAEDLPFAANSFDAYTIAFGIRNVPRIEVALKEAYRVLKRGGRLLVLEFSEVEMPLLDRFYDAWSFNAIPKFGKLITGDEAPYQYLVESIRKFPNQ 225          
BLAST of CX298054 vs. ExPASy Swiss-Prot
Match: COQ5_SCHPO (Ubiquinone biosynthesis methyltransferase coq5, mitochondrial OS=Schizosaccharomyces pombe GN=coq5 PE=2 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 5.974e-50
Identity = 112/215 (52.09%), Postives = 141/215 (65.58%), Query Frame = 2
Query:    5 LVSHVFSSVAKNYDLMNDLMSGGLHRLWKDRLVSKLNPFPG---MKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYQDKSLL-WVEGDAEALC-FEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIGELVAGDRGSYQYLVESVRRFP 634
            LV +VFSSVAK YD MND MS G+HRLWK+  VS+LNP      MK LDVAGGTGD+AFRIL+   +            +    TR+ V DINP+ML+VG +R+ +  Y D   + ++E +AE L    D+++D YTIAFGIRN THI K L +AYRVLK GG F CLE S V      ELY  YSF ++P +G ++AGD  SY+YLVES+ RFP
Sbjct:   64 LVKNVFSSVAKKYDEMNDAMSLGIHRLWKNIFVSRLNPGNSTVPMKILDVAGGTGDIAFRILNHATN-----------HNGDRNTRVIVADINPDMLSVGLRRSKKTPYYDSGRVEFIEQNAEILDKIPDNSIDMYTIAFGIRNCTHIPKVLEQAYRVLKPGGVFSCLEFSKVYPAPLAELYRQYSFKILPLLGTIIAGDSQSYEYLVESIERFP 267          
BLAST of CX298054 vs. ExPASy Swiss-Prot
Match: UBIE_ROSDO (Ubiquinone/menaquinone biosynthesis methyltransferase ubiE OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=ubiE PE=3 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 3.872e-49
Identity = 108/211 (51.18%), Postives = 136/211 (64.45%), Query Frame = 2
Query:    8 VSHVFSSVAKNYDLMNDLMSGGLHRLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYQDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIGELVAGDRGSYQYLVESVRRFPPQ 640
            V  VFSSVA  YD+MND+MS G+HRLWK+ ++  L P  G K LDVAGGTGD++FR L      KR                  V D+  +ML  G+KRA      D+ L WV GDA AL F D+T D YTI+FGIRNVT  ++AL EA+RVL+ GGR + LE S +  P  ++ YD YSF+VIP +G+ +AGDR SYQYLVES+R+FP Q
Sbjct:   25 VQGVFSSVASKYDIMNDVMSVGIHRLWKEAMMDWLAPRAGQKLLDVAGGTGDISFRFL------KRAGYGHAT-----------VLDLTESMLVEGRKRAEAAAMADQ-LDWVTGDAMALPFADNTFDVYTISFGIRNVTRPQEALNEAFRVLRPGGRLMVLEFSQLPNPAMQKAYDLYSFNVIPRMGQAIAGDRDSYQYLVESIRKFPDQ 217          
BLAST of CX298054 vs. ExPASy Swiss-Prot
Match: UBIE_SILST (Ubiquinone/menaquinone biosynthesis methyltransferase ubiE OS=Silicibacter sp. (strain TM1040) GN=ubiE PE=3 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 5.057e-49
Identity = 106/211 (50.24%), Postives = 134/211 (63.51%), Query Frame = 2
Query:    8 VSHVFSSVAKNYDLMNDLMSGGLHRLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYQDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIGELVAGDRGSYQYLVESVRRFPPQ 640
            V  VF+SVA  YD+MND+MS G+HR+WKD ++  L P PG + LDVAGGTGD++FR L                          V D+   ML  G+KRA E     + L WV GDA AL F+D+T D YTI+FGIRNVT  ++AL EAYRVLK GGR + LE S +     ++LYD YSF+VIP +G+++AGD  SYQYLVES+R FP Q
Sbjct:   25 VQGVFNSVASKYDIMNDVMSVGIHRIWKDAMMDWLAPRPGQRLLDVAGGTGDISFRFLKRAG-----------------HGHSTVLDLTTPMLEEGRKRA-EAEQMAECLDWVTGDAMALPFKDNTFDVYTISFGIRNVTRPQEALNEAYRVLKPGGRLMVLEFSQLPNDGLQKLYDLYSFNVIPRMGQMIAGDYDSYQYLVESIRNFPDQ 217          
BLAST of CX298054 vs. ExPASy Swiss-Prot
Match: COQ5_CAEEL (Ubiquinone biosynthesis methyltransferase coq-5, mitochondrial OS=Caenorhabditis elegans GN=coq-5 PE=3 SV=2)

HSP 1 Score: 192.586 bits (488), Expect = 1.471e-48
Identity = 110/212 (51.89%), Postives = 135/212 (63.68%), Query Frame = 2
Query:    8 VSHVFSSVAKNYDLMNDLMSGGLHRLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRA-LERGYQDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIGELVAGDRGSYQYLVESVRRFPPQ 640
            V HVF++VAK YDLMND MS G+HRLWKD  V  L      K LD+AGGTGD+AFRIL    + K                 + V DIN  ML+VGKKRA  ER  Q     WV  +AE + FE +T D +T++FGIRN TH EK + EA+RVLK GG+   LE S V+    K +YD YSF+VIP +GE++A DR SYQYLVES+R+FP Q
Sbjct:   57 VHHVFANVAKKYDLMNDAMSMGVHRLWKDYYVGGLQVPYNAKCLDMAGGTGDIAFRILRHSPTAK-----------------VTVSDINQPMLDVGKKRAEKERDIQPSRAEWVCANAEQMPFESNTYDLFTMSFGIRNCTHPEKVVREAFRVLKPGGQLAILEFSEVN-SALKPIYDAYSFNVIPVLGEILASDRASYQYLVESIRKFPNQ 250          
BLAST of CX298054 vs. ExPASy Swiss-Prot
Match: UBIE_CAUCR (Ubiquinone/menaquinone biosynthesis methyltransferase ubiE OS=Caulobacter crescentus GN=ubiE PE=3 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 4.281e-48
Identity = 107/212 (50.47%), Postives = 129/212 (60.85%), Query Frame = 2
Query:    5 LVSHVFSSVAKNYDLMNDLMSGGLHRLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYQDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIGELVAGDRGSYQYLVESVRRFPPQ 640
            LV  VF  VAKNYD+MNDLMSGG+HRLWKD + ++LNP PG   +D AGGTGD+A R        + R            +  I + D N  M+  G    +ERG + + + W  GDA+ L   D+  D Y I+FGIRNVT I  AL EA RVLK GGRFLCLE S        + YD YSF VIP +GE VA DR +YQYLVES+RRFP Q
Sbjct:   21 LVRGVFDRVAKNYDIMNDLMSGGVHRLWKDAVAARLNPQPGEVIIDCAGGTGDMARRFAKMARKAQERRGGP--------DATINIVDYNAEMIMAG----IERGGEPE-ITWTVGDAQRLPLPDAYADAYVISFGIRNVTDINAALREARRVLKPGGRFLCLEFSRPVTEPLAKAYDAYSFKVIPQVGEWVAKDRDAYQYLVESIRRFPDQ 219          
BLAST of CX298054 vs. ExPASy Swiss-Prot
Match: UBIE_CAUCN (Ubiquinone/menaquinone biosynthesis methyltransferase ubiE OS=Caulobacter crescentus (strain NA1000 / CB15N) GN=ubiE PE=3 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 4.281e-48
Identity = 107/212 (50.47%), Postives = 129/212 (60.85%), Query Frame = 2
Query:    5 LVSHVFSSVAKNYDLMNDLMSGGLHRLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYQDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIGELVAGDRGSYQYLVESVRRFPPQ 640
            LV  VF  VAKNYD+MNDLMSGG+HRLWKD + ++LNP PG   +D AGGTGD+A R        + R            +  I + D N  M+  G    +ERG + + + W  GDA+ L   D+  D Y I+FGIRNVT I  AL EA RVLK GGRFLCLE S        + YD YSF VIP +GE VA DR +YQYLVES+RRFP Q
Sbjct:   21 LVRGVFDRVAKNYDIMNDLMSGGVHRLWKDAVAARLNPQPGEVIIDCAGGTGDMARRFAKMARKAQERRGGP--------DATINIVDYNAEMIMAG----IERGGEPE-ITWTVGDAQRLPLPDAYADAYVISFGIRNVTDINAALREARRVLKPGGRFLCLEFSRPVTEPLAKAYDAYSFKVIPQVGEWVAKDRDAYQYLVESIRRFPDQ 219          
BLAST of CX298054 vs. ExPASy Swiss-Prot
Match: UBIE_WOLWR (Ubiquinone/menaquinone biosynthesis methyltransferase ubiE OS=Wolbachia sp. subsp. Drosophila simulans (strain wRi) GN=ubiE PE=3 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 7.302e-48
Identity = 107/214 (50.00%), Postives = 136/214 (63.55%), Query Frame = 2
Query:    5 LVSHVFSSVAKNYDLMNDLMSGGLHRLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYQDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELS--HVDIPVFKELYDYYSFSVIPAIGELVAGDRGSYQYLVESVRRFPPQ 640
            LV  VF SVA  YD MND+MS G+HRLWKDR+V+ ++     K LDVAGGTGD+A RI+    S K                 + VCDIN NML+ G+ +A+       +  WV  +AE+L FEDS  D  TIAFGIRNV+  +KAL EA+RVLK  G+F+CLE +  H    +F +LYD YSF VIP IG +VA D+ SY+YLV+S+R FP Q
Sbjct:   12 LVKEVFDSVASRYDTMNDIMSLGMHRLWKDRMVNSVHFTKNSKVLDVAGGTGDIAIRIVRKEPSAK-----------------VTVCDINQNMLSRGRDKAINS--NQINFDWVCANAESLPFEDSEFDYCTIAFGIRNVSDRKKALNEAHRVLKPHGKFICLEFAPMHYQNEIFTKLYDLYSFKVIPKIGSIVAKDKSSYEYLVKSIREFPTQ 206          
The following BLAST results are available for this feature:
BLAST of CX298054 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 408
Match NameE-valueIdentityDescription
UBIE_RHOS57.056e-5151.89Ubiquinone/menaquinone biosynthesis methyltransfer... [more]
UBIE_DINSH1.204e-5052.36Ubiquinone/menaquinone biosynthesis methyltransfer... [more]
UBIE_RHISN5.974e-5051.87Ubiquinone/menaquinone biosynthesis methyltransfer... [more]
COQ5_SCHPO5.974e-5052.09Ubiquinone biosynthesis methyltransferase coq5, mi... [more]
UBIE_ROSDO3.872e-4951.18Ubiquinone/menaquinone biosynthesis methyltransfer... [more]
UBIE_SILST5.057e-4950.24Ubiquinone/menaquinone biosynthesis methyltransfer... [more]
COQ5_CAEEL1.471e-4851.89Ubiquinone biosynthesis methyltransferase coq-5, m... [more]
UBIE_CAUCR4.281e-4850.47Ubiquinone/menaquinone biosynthesis methyltransfer... [more]
UBIE_CAUCN4.281e-4850.47Ubiquinone/menaquinone biosynthesis methyltransfer... [more]
UBIE_WOLWR7.302e-4850.00Ubiquinone/menaquinone biosynthesis methyltransfer... [more]

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Properties
Property NameValue
Genbank descriptionC06008B03SK RindPdig24 Citrus clementina cDNA clone C06008B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298054 ID=CX298054; Name=CX298054; organism=Citrus clementina; type=EST; length=642bp
GTCATTGGTTAGCCATGTTTTCAGCAGTGTTGCTAAAAACTATGATCTCA
TGAATGATTTGATGAGTGGTGGATTGCATAGATTGTGGAAGGATAGACTT
GTTTCCAAGTTGAATCCATTTCCGGGAATGAAGCACCTTGATGTTGCTGG
TGGAACAGGGGATGTTGCTTTCAGGATTTTAGACACTGTAAATAGCATCA
AACGAAGAGCACTCCAGGATGTTCTTGAAGATGATTTACAGGAGGAAACT
CGGATATATGTTTGTGACATCAACCCAAACATGCTAAATGTTGGTAAAAA
GCGTGCTTTAGAGAGAGGTTACCAGGACAAATCACTTTTGTGGGTGGAAG
GAGATGCAGAAGCCTTGTGCTTTGAAGACAGTACTATGGATGGTTACACA
ATTGCCTTCGGAATTAGGAATGTTACTCATATTGAGAAGGCTCTAGCTGA
AGCTTACAGGGTACTGAAACGTGGAGGAAGATTTCTGTGCCTTGAGCTGA
GCCACGTCGATATTCCTGTATTCAAGGAATTGTACGATTATTACTCATTT
TCAGTCATTCCAGCAATAGGGGAACTGGTAGCAGGTGATCGGGGTTCTTA
TCAGTACTTGGTTGAGAGTGTCCGCCGTTTTCCCCCTCAGGA
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