CX298054

Overview
NameCX298054
Unique NameCX298054
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length642
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX298054 vs. ExPASy Swiss-Prot
Match: UBIE_RICM5 (Ubiquinone/menaquinone biosynthesis methyltransferase ubiE OS=Rickettsia massiliae (strain Mtu5) GN=ubiE PE=3 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 4.585e-42
Identity = 98/216 (45.37%), Postives = 133/216 (61.57%), Query Frame = 2
Query:    5 LVSHVFSSVAKNYDLMNDLMSGGLHRLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRIL----DTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYQDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIGELVAGDRGSYQYLVESVRRFPPQ 640
            LV++VFS+VA  YDLMNDLMS GLHRLWKD  + ++ P      LDVA G+GD+A ++     D VN+I                  + + DIN  ML   KK+A++     ++L +    AE L F D + D YTIAFGIRNV  I KAL EA RVLK  G+F+CLE S V     K+ Y +YSF++IP+IG+++ G++ +Y+YLVES+  FP Q
Sbjct:   19 LVNNVFSNVADKYDLMNDLMSLGLHRLWKDEFIRQI-PNLNSHILDVASGSGDIALKLAKKARDRVNNIS-----------------LTLSDINEEMLKQAKKKAIDLNLF-QNLKFTVASAEELPFPDDSFDYYTIAFGIRNVPDINKALKEACRVLKPMGKFICLEFSKVKEGYIKDFYKFYSFNIIPSIGQMIVGNKEAYEYLVESIELFPSQ 215          
BLAST of CX298054 vs. ExPASy Swiss-Prot
Match: UBIE_RICBR (Ubiquinone/menaquinone biosynthesis methyltransferase ubiE OS=Rickettsia bellii (strain RML369-C) GN=ubiE PE=3 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 4.585e-42
Identity = 95/213 (44.60%), Postives = 130/213 (61.03%), Query Frame = 2
Query:    2 SLVSHVFSSVAKNYDLMNDLMSGGLHRLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYQDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIGELVAGDRGSYQYLVESVRRFPPQ 640
            SLV+ VFS+VA  YDLMNDLMS G+HRLWKD  + ++ P      LDVA G+GD+A ++                  D      + + DIN  ML   KK++++     ++L +    AE L F D++ D YTIAFGIRNV  I KAL EAYRVLK  G+F+CLE S V   + ++ Y +YSF+VIP IG+++ G++ +Y YLVES+  FP Q
Sbjct:   18 SLVNSVFSNVADKYDLMNDLMSFGMHRLWKDEFIRQI-PNLNSNILDVASGSGDIALKLAKKAK-------------DRGSNISLTLSDINEEMLRQAKKKSIDLNLF-QNLKFTVASAEELPFPDNSFDYYTIAFGIRNVPDINKALKEAYRVLKPMGKFICLEFSKVKESLLQDFYKFYSFNVIPKIGQIITGNKEAYDYLVESIDLFPSQ 215          
BLAST of CX298054 vs. ExPASy Swiss-Prot
Match: UBIE_RICTY (Ubiquinone/menaquinone biosynthesis methyltransferase ubiE OS=Rickettsia typhi GN=ubiE PE=3 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 5.988e-42
Identity = 94/212 (44.34%), Postives = 135/212 (63.68%), Query Frame = 2
Query:    5 LVSHVFSSVAKNYDLMNDLMSGGLHRLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYQDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIGELVAGDRGSYQYLVESVRRFPPQ 640
            LV+++FS VA  YDLMNDLMS GLHRLWK+  + ++ P      LDVA G+GD+A ++       K R               + + DIN  MLN  KK++++     +++ ++  +AE L F D++ D YTIAFGIRNV  I KAL EAYRVLK  G+F+CLE S V   + K+ Y +YSF++IP+IG+++A ++ +Y+YLVES+  FP Q
Sbjct:   19 LVNNIFSRVADKYDLMNDLMSIGLHRLWKNEFIMQI-PNLNSNILDVASGSGDIALQL---AKKAKARG----------NNISLILSDINEEMLNNAKKKSIDLNLF-QNMKFIVANAEELPFLDNSFDYYTIAFGIRNVPDINKALKEAYRVLKPMGKFICLEFSKVKEGILKDFYKFYSFTIIPSIGQIIARNKEAYEYLVESIALFPSQ 215          
BLAST of CX298054 vs. ExPASy Swiss-Prot
Match: UBIE_RICB8 (Ubiquinone/menaquinone biosynthesis methyltransferase ubiE OS=Rickettsia bellii (strain OSU 85-389) GN=ubiE PE=3 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 5.988e-42
Identity = 95/213 (44.60%), Postives = 130/213 (61.03%), Query Frame = 2
Query:    2 SLVSHVFSSVAKNYDLMNDLMSGGLHRLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYQDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIGELVAGDRGSYQYLVESVRRFPPQ 640
            SLV+ VFS+VA  YDLMNDLMS G+HRLWKD  + ++ P      LDVA G+GD+A ++                  D      + + DIN  ML   KK++++     ++L +    AE L F D++ D YTIAFGIRNV  I KAL EAYRVLK  G+F+CLE S V   + ++ Y +YSF+VIP IG+++ G++ +Y YLVES+  FP Q
Sbjct:   18 SLVNSVFSNVADKYDLMNDLMSFGMHRLWKDEFIRQI-PNLNSNILDVASGSGDIALKLAKKAK-------------DRGSNISLTLSDINEEMLRQAKKKSIDLNLF-QNLKFTVASAEELPFPDNSFDYYTIAFGIRNVPDINKALKEAYRVLKPMGKFICLEFSKVKESLLQDFYKFYSFNVIPKIGKIITGNKEAYDYLVESIDLFPSQ 215          
BLAST of CX298054 vs. ExPASy Swiss-Prot
Match: UBIE_LARHH (Ubiquinone/menaquinone biosynthesis methyltransferase ubiE OS=Laribacter hongkongensis (strain HLHK9) GN=ubiE PE=3 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 5.988e-42
Identity = 101/211 (47.87%), Postives = 129/211 (61.14%), Query Frame = 2
Query:    8 VSHVFSSVAKNYDLMNDLMSGGLHRLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYQDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIGELVAGDRGSYQYLVESVRRFPPQ 640
            V+ VF SVAK YD+MNDLMSGGLHR+WK   +S     PGMK LD+AGGTGD+A          K+R         + +   +++ DIN +ML VG+ R L+ G     L     DAE L F DS  D  ++AFG+RN+TH ++AL E  RVLK GG+ L LE S V  P+ K +YD YSF  +P +G+LVA D  SYQYL ES+R  P Q
Sbjct:   21 VAEVFHSVAKKYDVMNDLMSGGLHRIWKHFTLSTAGVRPGMKVLDIAGGTGDLA-------RGWKKR---------VGKTGEVWLTDINSSMLTVGRDRLLDEG---MILPVAIADAEKLPFPDSHFDLVSVAFGLRNMTHKDQALKEMCRVLKPGGKLLVLEFSKVWTPL-KPVYDLYSFKALPLMGKLVARDADSYQYLAESIRMHPDQ 211          
BLAST of CX298054 vs. ExPASy Swiss-Prot
Match: UBIE_IDILO (Ubiquinone/menaquinone biosynthesis methyltransferase ubiE OS=Idiomarina loihiensis GN=ubiE PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 2.275e-41
Identity = 95/213 (44.60%), Postives = 127/213 (59.62%), Query Frame = 2
Query:    2 SLVSHVFSSVAKNYDLMNDLMSGGLHRLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYQDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIGELVAGDRGSYQYLVESVRRFPPQ 640
            +LV+ VF SVA  YD+MNDLMS G+HRLWK   +       GMK LD+AGGTGD+  +    V +                E  + + DIN  ML VG+ +  +RG    ++ +V+ DAE L F+D+T D  TIAFG+RNVT  +KAL    RVLK GGR L LE S        ++YD+YSF+++P +G++VA D  SYQYL ES+R  P Q
Sbjct:   23 NLVADVFQSVAAKYDVMNDLMSFGIHRLWKRYTIDCSGVRRGMKVLDIAGGTGDLTAQFSRRVGA----------------EGEVVLADINDAMLKVGRDKLRDRGIIG-NVRYVQADAEELPFDDNTFDVITIAFGLRNVTDKDKALRSMLRVLKPGGRVLILEFSKPVSATLNQVYDFYSFNILPKMGQVVANDSDSYQYLAESIRMHPDQ 218          
BLAST of CX298054 vs. ExPASy Swiss-Prot
Match: UBIE_BURPP (Ubiquinone/menaquinone biosynthesis methyltransferase ubiE OS=Burkholderia phytofirmans (strain DSM 17436 / PsJN) GN=ubiE PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 2.275e-41
Identity = 100/211 (47.39%), Postives = 125/211 (59.24%), Query Frame = 2
Query:    8 VSHVFSSVAKNYDLMNDLMSGGLHRLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYQDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIGELVAGDRGSYQYLVESVRRFPPQ 640
            V+ VF SVA NYDLMNDLMSGGLHR WK   +++ N  PG K LD+AGGTGD                L         +   ++  DIN +ML VG+ R L++G    +LL    DAE + F D+  D  T+AFG+RN+TH + ALAE  RVLK  GR L LE S V  P+ K++YD YSF V+P +GE  A D  SYQYL ES+R  P Q
Sbjct:   20 VAGVFHSVAANYDLMNDLMSGGLHRAWKMFTIAQANVRPGYKVLDIAGGTGD----------------LSKAFAKQAGDTGEVWHTDINESMLRVGRDRLLDKGVITPALLC---DAEKIPFPDNYFDVVTVAFGLRNMTHKDVALAEMRRVLKPAGRLLVLEFSKVWDPL-KKVYDVYSFKVLPWLGERFAKDAESYQYLAESIRMHPDQ 210          
BLAST of CX298054 vs. ExPASy Swiss-Prot
Match: UBIE_XYLFT (Ubiquinone/menaquinone biosynthesis methyltransferase ubiE OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=ubiE PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 2.972e-41
Identity = 95/213 (44.60%), Postives = 133/213 (62.44%), Query Frame = 2
Query:    2 SLVSHVFSSVAKNYDLMNDLMSGGLHRLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYQDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIGELVAGDRGSYQYLVESVRRFPPQ 640
            +LV+ VF+SV++ YDLMNDLMS G+HR WK   V+      G + LD+AGGTGD+A  + + V +                E  I + DIN +ML+VG+ R ++RG   + L +V+ +AEAL F+D   D  T++FG+RNVT  + AL E +RVLK GG+   LE S V    FK +YD++SF V+P +G L A D  SY+YL ES+R+ PPQ
Sbjct:   25 TLVAEVFTSVSRRYDLMNDLMSLGIHRAWKRYFVATAQVKSGDRVLDLAGGTGDIAMLLKNRVGA----------------EGSIVLGDINASMLSVGRDRLIDRGVVAR-LDYVQCNAEALPFQDKCFDLVTMSFGLRNVTDKDAALREMFRVLKVGGQARVLEFSAVTAEWFKPIYDFHSFQVLPRLGRLFARDAASYRYLAESIRKHPPQ 220          
BLAST of CX298054 vs. ExPASy Swiss-Prot
Match: UBIE_XYLF2 (Ubiquinone/menaquinone biosynthesis methyltransferase ubiE OS=Xylella fastidiosa (strain M23) GN=ubiE PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 2.972e-41
Identity = 95/213 (44.60%), Postives = 133/213 (62.44%), Query Frame = 2
Query:    2 SLVSHVFSSVAKNYDLMNDLMSGGLHRLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYQDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIGELVAGDRGSYQYLVESVRRFPPQ 640
            +LV+ VF+SV++ YDLMNDLMS G+HR WK   V+      G + LD+AGGTGD+A  + + V +                E  I + DIN +ML+VG+ R ++RG   + L +V+ +AEAL F+D   D  T++FG+RNVT  + AL E +RVLK GG+   LE S V    FK +YD++SF V+P +G L A D  SY+YL ES+R+ PPQ
Sbjct:   25 TLVAEVFTSVSRRYDLMNDLMSLGIHRAWKRYFVATAQVKSGDRVLDLAGGTGDIAMLLKNRVGA----------------EGSIVLGDINASMLSVGRDRLIDRGVVAR-LDYVQCNAEALPFQDKCFDLVTMSFGLRNVTDKDAALREMFRVLKVGGQARVLEFSAVTAEWFKPIYDFHSFQVLPRLGRLFARDAASYRYLAESIRKHPPQ 220          
BLAST of CX298054 vs. ExPASy Swiss-Prot
Match: UBIE_ACICJ (Ubiquinone/menaquinone biosynthesis methyltransferase ubiE OS=Acidiphilium cryptum (strain JF-5) GN=ubiE PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 2.972e-41
Identity = 97/211 (45.97%), Postives = 125/211 (59.24%), Query Frame = 2
Query:    8 VSHVFSSVAKNYDLMNDLMSGGLHRLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYQDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIGELVAGDRGSYQYLVESVRRFPPQ 640
            V  VF SVA  YD+MNDLMS G+HRLWK   V+ ++P P    LD+AGGTGD++ R L                        + + DIN  ML VG+ RA E+  + + + +   DAEAL   DS +D  +IAFG+RN T  ++ LAEA RVLK GGRF CLE S + +   + LY+ +SF  +PAIG  VA DR SYQYL ES+R FP Q
Sbjct:   25 VREVFDSVAGRYDIMNDLMSLGVHRLWKREFVAMMDPRPHRTLLDLAGGTGDISLRWLAAGGG------------------PVLMTDINEAMLRVGRGRAEEQA-RIEGIGFAVADAEALPLRDSCVDRVSIAFGLRNCTDKDRVLAEARRVLKPGGRFFCLEFSRLQVAAAQPLYEKWSFVALPAIGARVAQDRESYQYLAESIRMFPDQ 216          
The following BLAST results are available for this feature:
BLAST of CX298054 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 408
Match NameE-valueIdentityDescription
UBIE_RICM54.585e-4245.37Ubiquinone/menaquinone biosynthesis methyltransfer... [more]
UBIE_RICBR4.585e-4244.60Ubiquinone/menaquinone biosynthesis methyltransfer... [more]
UBIE_RICTY5.988e-4244.34Ubiquinone/menaquinone biosynthesis methyltransfer... [more]
UBIE_RICB85.988e-4244.60Ubiquinone/menaquinone biosynthesis methyltransfer... [more]
UBIE_LARHH5.988e-4247.87Ubiquinone/menaquinone biosynthesis methyltransfer... [more]
UBIE_IDILO2.275e-4144.60Ubiquinone/menaquinone biosynthesis methyltransfer... [more]
UBIE_BURPP2.275e-4147.39Ubiquinone/menaquinone biosynthesis methyltransfer... [more]
UBIE_XYLFT2.972e-4144.60Ubiquinone/menaquinone biosynthesis methyltransfer... [more]
UBIE_XYLF22.972e-4144.60Ubiquinone/menaquinone biosynthesis methyltransfer... [more]
UBIE_ACICJ2.972e-4145.97Ubiquinone/menaquinone biosynthesis methyltransfer... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC06008B03SK RindPdig24 Citrus clementina cDNA clone C06008B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298054 ID=CX298054; Name=CX298054; organism=Citrus clementina; type=EST; length=642bp
GTCATTGGTTAGCCATGTTTTCAGCAGTGTTGCTAAAAACTATGATCTCA
TGAATGATTTGATGAGTGGTGGATTGCATAGATTGTGGAAGGATAGACTT
GTTTCCAAGTTGAATCCATTTCCGGGAATGAAGCACCTTGATGTTGCTGG
TGGAACAGGGGATGTTGCTTTCAGGATTTTAGACACTGTAAATAGCATCA
AACGAAGAGCACTCCAGGATGTTCTTGAAGATGATTTACAGGAGGAAACT
CGGATATATGTTTGTGACATCAACCCAAACATGCTAAATGTTGGTAAAAA
GCGTGCTTTAGAGAGAGGTTACCAGGACAAATCACTTTTGTGGGTGGAAG
GAGATGCAGAAGCCTTGTGCTTTGAAGACAGTACTATGGATGGTTACACA
ATTGCCTTCGGAATTAGGAATGTTACTCATATTGAGAAGGCTCTAGCTGA
AGCTTACAGGGTACTGAAACGTGGAGGAAGATTTCTGTGCCTTGAGCTGA
GCCACGTCGATATTCCTGTATTCAAGGAATTGTACGATTATTACTCATTT
TCAGTCATTCCAGCAATAGGGGAACTGGTAGCAGGTGATCGGGGTTCTTA
TCAGTACTTGGTTGAGAGTGTCCGCCGTTTTCCCCCTCAGGA
back to top