CX298054

Overview
NameCX298054
Unique NameCX298054
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length642
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX298054 vs. ExPASy Swiss-Prot
Match: UBIE_XYLFA (Ubiquinone/menaquinone biosynthesis methyltransferase ubiE OS=Xylella fastidiosa GN=ubiE PE=3 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 3.881e-41
Identity = 95/213 (44.60%), Postives = 132/213 (61.97%), Query Frame = 2
Query:    2 SLVSHVFSSVAKNYDLMNDLMSGGLHRLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYQDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIGELVAGDRGSYQYLVESVRRFPPQ 640
            +LV+ VF+SV++ YDLMNDLMS G+HR WK   V+      G + LD+AGGTGD+A  + + V +                E  I + DIN +ML+VG+ R ++RG     L +V+ +AEAL F+D   D  T++FG+RNVT  + AL E +RVLK GG+   LE S V    FK +YD++SF V+P +G L A D  SY+YL ES+R+ PPQ
Sbjct:   25 TLVAEVFTSVSRRYDLMNDLMSLGIHRAWKRYFVATAQVKSGDRVLDLAGGTGDIAMLLKNRVGA----------------EGSIVLGDINASMLSVGRDRLIDRGVV-AHLDYVQCNAEALPFQDKCFDLVTMSFGLRNVTDKDTALCEMFRVLKVGGQARVLEFSTVTAEWFKPIYDFHSFQVLPRLGRLFARDAASYRYLAESIRKHPPQ 220          
BLAST of CX298054 vs. ExPASy Swiss-Prot
Match: UBIE_BURP8 (Ubiquinone/menaquinone biosynthesis methyltransferase ubiE OS=Burkholderia phymatum (strain DSM 17167 / STM815) GN=ubiE PE=3 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 3.881e-41
Identity = 99/211 (46.92%), Postives = 129/211 (61.14%), Query Frame = 2
Query:    8 VSHVFSSVAKNYDLMNDLMSGGLHRLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYQDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIGELVAGDRGSYQYLVESVRRFPPQ 640
            V+ VF SVA NYDLMNDLMSGGLHR WK   +++ N  PG K LD+AGGTGD++        +  +RA          E   ++  DIN +ML VG+ R +++G    +LL    DAE + F D+  D  T+AFG+RN+TH + ALAE  RVLK  GR L LE S V  P+ K+ YD YSF V+P +G+  A D  SY+YL ES+R  P Q
Sbjct:   20 VAGVFHSVASNYDLMNDLMSGGLHRAWKAFTIAQANVRPGYKVLDIAGGTGDLS-------KAFAKRA---------GETGEVWHTDINESMLRVGRDRLIDKGVITPTLLC---DAEKIPFPDNYFDVVTVAFGLRNMTHKDAALAEMRRVLKPAGRLLVLEFSKVWDPL-KKAYDVYSFKVLPWLGDRFAKDADSYRYLAESIRMHPDQ 210          
BLAST of CX298054 vs. ExPASy Swiss-Prot
Match: UBIE_XYLFM (Ubiquinone/menaquinone biosynthesis methyltransferase ubiE OS=Xylella fastidiosa (strain M12) GN=ubiE PE=3 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 5.069e-41
Identity = 95/213 (44.60%), Postives = 133/213 (62.44%), Query Frame = 2
Query:    2 SLVSHVFSSVAKNYDLMNDLMSGGLHRLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYQDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIGELVAGDRGSYQYLVESVRRFPPQ 640
            +LV+ VF+SV++ YDLMNDLMS G+HR WK   V+      G + LD+AGGTGD+A  + + V +                E  I + DIN +ML+VG+ R ++RG   + L +V+ +AEAL F+D   D  T++FG+RNVT  + AL E +RVLK GG+   LE S V    FK +YD++SF V+P +G L A D  SY+YL ES+R+ PPQ
Sbjct:   25 TLVAEVFTSVSRRYDLMNDLMSLGIHRAWKRYFVATAQVKSGDRVLDLAGGTGDIAMLLKNRVGA----------------EGSIVLGDINASMLSVGRDRLIDRGVVAR-LEYVQCNAEALPFQDKCFDLVTMSFGLRNVTDKDTALREMFRVLKVGGQARVLEFSTVTAEWFKPIYDFHSFQVLPRLGWLFARDAASYRYLAESIRKHPPQ 220          
BLAST of CX298054 vs. ExPASy Swiss-Prot
Match: UBIE_FRAP2 (Ubiquinone/menaquinone biosynthesis methyltransferase ubiE OS=Francisella philomiragia subsp. philomiragia (strain ATCC 25017) GN=ubiE PE=3 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 5.069e-41
Identity = 91/211 (43.13%), Postives = 129/211 (61.14%), Query Frame = 2
Query:    8 VSHVFSSVAKNYDLMNDLMSGGLHRLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYQDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIGELVAGDRGSYQYLVESVRRFPPQ 640
            V+ VF SVA  YDLMNDLMS G+HR+WK + ++K     G K LD+AGGTGD+A++    V S                + ++ + DIN +ML VGK++   +G    ++ +V+ +AE L F D+  D  TI+FG+RNVT   KALA   RVLK GGR L LE S   +P+  ++YD YSF  +P +G+++  D  SY+YL ES+R+ P Q
Sbjct:   24 VAGVFHSVAAKYDLMNDLMSFGIHRIWKKQTIAKTGVRKGDKVLDLAGGTGDLAYKFCQMVGS----------------QGKVVLSDINSSMLEVGKEKLTNKGCVG-NIEYVQANAECLPFPDNYFDCITISFGLRNVTDKAKALASMCRVLKPGGRLLVLEFSKPIVPMLSKVYDEYSFKALPFLGKIITQDAESYKYLAESIRKHPDQ 217          
BLAST of CX298054 vs. ExPASy Swiss-Prot
Match: UBIE_PSEMY (Ubiquinone/menaquinone biosynthesis methyltransferase ubiE OS=Pseudomonas mendocina (strain ymp) GN=ubiE PE=3 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 6.620e-41
Identity = 94/211 (44.55%), Postives = 122/211 (57.82%), Query Frame = 2
Query:    8 VSHVFSSVAKNYDLMNDLMSGGLHRLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYQDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIGELVAGDRGSYQYLVESVRRFPPQ 640
            V+ VF SVA  YDLMND++SGGLHRLWK   +      PG + LD+AGGTGD+  +    V                     + + DIN +ML VG+ R L++G    ++ +V+ DAE L F D+  D  TIAFG+RNVTH E AL    RVLK GGR L LE S    P+  ++YD YSFS +P  G+L+  D  SY+YL ES+R  P Q
Sbjct:   30 VAEVFHSVAAKYDLMNDVLSGGLHRLWKRFTIELSGVRPGNRVLDIAGGTGDLTRKFASIVGPTGE----------------VVLADINDSMLKVGRDRLLDKGVAG-NVQFVQADAEKLPFPDNHFDVVTIAFGLRNVTHKEDALRSMLRVLKPGGRLLVLEFSKPGNPLLAKVYDTYSFSFMPLAGKLITNDADSYRYLAESIRMHPDQ 223          
BLAST of CX298054 vs. ExPASy Swiss-Prot
Match: UBIE_HAHCH (Ubiquinone/menaquinone biosynthesis methyltransferase ubiE OS=Hahella chejuensis (strain KCTC 2396) GN=ubiE PE=3 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 6.620e-41
Identity = 95/213 (44.60%), Postives = 126/213 (59.15%), Query Frame = 2
Query:    2 SLVSHVFSSVAKNYDLMNDLMSGGLHRLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYQDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIGELVAGDRGSYQYLVESVRRFPPQ 640
            S V+ VF SVA  YDLMNDLMS G+HRLWK   + K     G   LD+AGGTGD+  +    V                    ++ + DIN +ML VG+ + L+ GY D ++ +V+ +AEAL F D++ D  +IAFG+RNVT  ++AL E  RVL+ GGR L LE S    P+  + YD YSFS +P +G LVA D  SY+YL ES+R  P Q
Sbjct:   21 SHVAKVFDSVAAKYDLMNDLMSMGIHRLWKRFTIDKSGVRAGASVLDIAGGTGDLTKKFSRLVGP----------------SGKVVLADINASMLQVGRNQLLDHGYGD-NIEFVQANAEALPFPDNSFDCVSIAFGLRNVTDKDQALREMQRVLRPGGRLLVLEFSKPTNPIVSKAYDVYSFSALPLMGSLVAQDSESYRYLAESIRMHPDQ 216          
BLAST of CX298054 vs. ExPASy Swiss-Prot
Match: UBIE_FRATN (Ubiquinone/menaquinone biosynthesis methyltransferase ubiE OS=Francisella tularensis subsp. novicida (strain U112) GN=ubiE PE=3 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 6.620e-41
Identity = 91/211 (43.13%), Postives = 129/211 (61.14%), Query Frame = 2
Query:    8 VSHVFSSVAKNYDLMNDLMSGGLHRLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYQDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIGELVAGDRGSYQYLVESVRRFPPQ 640
            V+ VF SVA  YDLMNDLMS G+HR+WK + ++K     G   LD+AGGTGD+A++    V                 ++ ++ + DIN +ML VGK++   +G    ++ +V+ +AE L F D+  D  TI+FG+RNVT  EKALA   RVLK GGR L LE S   IP+  ++YD YSF  +P +G+++  D  SY+YL ES+R+ P Q
Sbjct:   24 VAGVFHSVAAKYDLMNDLMSFGIHRIWKKQTIAKSGVRKGDNVLDLAGGTGDLAYKFCQMVG----------------QQGKVILSDINSSMLEVGKEKLTNKGCVG-NIEYVQANAECLPFPDNYFDCITISFGLRNVTDKEKALASMCRVLKPGGRLLVLEFSKPIIPLLSKVYDEYSFKALPFLGKIITQDAESYKYLAESIRKHPDQ 217          
BLAST of CX298054 vs. ExPASy Swiss-Prot
Match: UBIE_FRATW (Ubiquinone/menaquinone biosynthesis methyltransferase ubiE OS=Francisella tularensis subsp. tularensis (strain WY96-3418) GN=ubiE PE=3 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 8.646e-41
Identity = 90/211 (42.65%), Postives = 129/211 (61.14%), Query Frame = 2
Query:    8 VSHVFSSVAKNYDLMNDLMSGGLHRLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYQDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIGELVAGDRGSYQYLVESVRRFPPQ 640
            V+ VF SVA  YDLMNDLMS G+HR+WK + ++K     G   LD+AGGTGD+A++    V                 ++ ++ + DIN +ML VGK++   +G    ++ +V+ +AE L F D+  D  TI+FG+RNVT  +KALA   RVLK GGR L LE S   IP+  ++YD YSF  +P +G+++  D  SY+YL ES+R+ P Q
Sbjct:   24 VAGVFHSVAAKYDLMNDLMSFGIHRIWKKQTIAKSGVHKGDNVLDLAGGTGDLAYKFCQMVG----------------QQGKVILSDINSSMLEVGKEKLTNKGCVG-NIEYVQANAECLPFPDNYFDCITISFGLRNVTDKDKALASMCRVLKPGGRLLVLEFSKPIIPLLSKVYDEYSFKALPFLGKIITQDAESYKYLAESIRKHPDQ 217          
BLAST of CX298054 vs. ExPASy Swiss-Prot
Match: UBIE_FRATM (Ubiquinone/menaquinone biosynthesis methyltransferase ubiE OS=Francisella tularensis subsp. mediasiatica (strain FSC147) GN=ubiE PE=3 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 1.475e-40
Identity = 90/211 (42.65%), Postives = 129/211 (61.14%), Query Frame = 2
Query:    8 VSHVFSSVAKNYDLMNDLMSGGLHRLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYQDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIGELVAGDRGSYQYLVESVRRFPPQ 640
            V+ VF SVA  YDLMNDLMS G+HR+WK + ++K     G   LD+AGGTGD+A++    V                 ++ ++ + DIN +ML VGK++   +G    ++ +V+ +AE L F D+  D  TI+FG+RNVT  +KALA   RVLK GGR L LE S   IP+  ++YD YSF  +P +G+++  D  SY+YL ES+R+ P Q
Sbjct:   24 VAGVFHSVAAKYDLMNDLMSFGIHRIWKKQTIAKSGVRKGDNVLDLAGGTGDLAYKFCQMVG----------------QQGKVILSDINSSMLEVGKEKLTNKGCVG-NIEYVQANAECLPFPDNYFDCITISFGLRNVTDKDKALASMCRVLKPGGRLLVLEFSKPIIPLLSKVYDEYSFKALPFLGKIITQDAESYKYLAESIRKHPDQ 217          
BLAST of CX298054 vs. ExPASy Swiss-Prot
Match: UBIE_RALME (Ubiquinone/menaquinone biosynthesis methyltransferase ubiE OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) GN=ubiE PE=3 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 2.516e-40
Identity = 95/211 (45.02%), Postives = 125/211 (59.24%), Query Frame = 2
Query:    8 VSHVFSSVAKNYDLMNDLMSGGLHRLWKDRLVSKLNPFPGMKHLDVAGGTGDVAFRILDTVNSIKRRALQDVLEDDLQEETRIYVCDINPNMLNVGKKRALERGYQDKSLLWVEGDAEALCFEDSTMDGYTIAFGIRNVTHIEKALAEAYRVLKRGGRFLCLELSHVDIPVFKELYDYYSFSVIPAIGELVAGDRGSYQYLVESVRRFPPQ 640
            V+ VF SVA  YD+MNDLMSGG+HRLWK   +++ N  PG K LD+AGGTGD+A                            +++ DIN +ML VG+ R L +G      L    DAE + F D+  D  T+AFG+RN+TH + ALAE  RV+K GG+ + LE S V  P+ ++ YD YSF V+P +GE VAGD  SY+YL ES+R  P Q
Sbjct:   20 VAGVFHSVASKYDVMNDLMSGGMHRLWKVFTIAQANVRPGQKVLDIAGGTGDLA----------------KAFAKQAGPTGEVWLTDINESMLRVGRDRLLNKGVVTPVALC---DAERIPFPDNYFDLVTVAFGLRNMTHKDAALAEMRRVIKPGGKVMVLEFSKVWKPL-EKFYDVYSFKVLPWLGERVAGDAPSYRYLAESIRMHPDQ 210          
The following BLAST results are available for this feature:
BLAST of CX298054 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 408
Match NameE-valueIdentityDescription
UBIE_XYLFA3.881e-4144.60Ubiquinone/menaquinone biosynthesis methyltransfer... [more]
UBIE_BURP83.881e-4146.92Ubiquinone/menaquinone biosynthesis methyltransfer... [more]
UBIE_XYLFM5.069e-4144.60Ubiquinone/menaquinone biosynthesis methyltransfer... [more]
UBIE_FRAP25.069e-4143.13Ubiquinone/menaquinone biosynthesis methyltransfer... [more]
UBIE_PSEMY6.620e-4144.55Ubiquinone/menaquinone biosynthesis methyltransfer... [more]
UBIE_HAHCH6.620e-4144.60Ubiquinone/menaquinone biosynthesis methyltransfer... [more]
UBIE_FRATN6.620e-4143.13Ubiquinone/menaquinone biosynthesis methyltransfer... [more]
UBIE_FRATW8.646e-4142.65Ubiquinone/menaquinone biosynthesis methyltransfer... [more]
UBIE_FRATM1.475e-4042.65Ubiquinone/menaquinone biosynthesis methyltransfer... [more]
UBIE_RALME2.516e-4045.02Ubiquinone/menaquinone biosynthesis methyltransfer... [more]

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Properties
Property NameValue
Genbank descriptionC06008B03SK RindPdig24 Citrus clementina cDNA clone C06008B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298054 ID=CX298054; Name=CX298054; organism=Citrus clementina; type=EST; length=642bp
GTCATTGGTTAGCCATGTTTTCAGCAGTGTTGCTAAAAACTATGATCTCA
TGAATGATTTGATGAGTGGTGGATTGCATAGATTGTGGAAGGATAGACTT
GTTTCCAAGTTGAATCCATTTCCGGGAATGAAGCACCTTGATGTTGCTGG
TGGAACAGGGGATGTTGCTTTCAGGATTTTAGACACTGTAAATAGCATCA
AACGAAGAGCACTCCAGGATGTTCTTGAAGATGATTTACAGGAGGAAACT
CGGATATATGTTTGTGACATCAACCCAAACATGCTAAATGTTGGTAAAAA
GCGTGCTTTAGAGAGAGGTTACCAGGACAAATCACTTTTGTGGGTGGAAG
GAGATGCAGAAGCCTTGTGCTTTGAAGACAGTACTATGGATGGTTACACA
ATTGCCTTCGGAATTAGGAATGTTACTCATATTGAGAAGGCTCTAGCTGA
AGCTTACAGGGTACTGAAACGTGGAGGAAGATTTCTGTGCCTTGAGCTGA
GCCACGTCGATATTCCTGTATTCAAGGAATTGTACGATTATTACTCATTT
TCAGTCATTCCAGCAATAGGGGAACTGGTAGCAGGTGATCGGGGTTCTTA
TCAGTACTTGGTTGAGAGTGTCCGCCGTTTTCCCCCTCAGGA
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