CX298057

Overview
NameCX298057
Unique NameCX298057
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length677
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX298057 vs. ExPASy Swiss-Prot
Match: HIS8_METM5 (Histidinol-phosphate aminotransferase OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=hisC PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.883e-11
Identity = 46/190 (24.21%), Postives = 84/190 (44.21%), Query Frame = 2
Query:   47 NQYARGHGVPE-FNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPE-FAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAI 610
            N+ +  H  P+  N  +     K +  ++  E  +    G  E I   +  LI+ GDEVI+  P +  Y  +  + GA IK         F + +E + + I++ T+ I + TP+NPTG +   E++  I       D LV  D  Y  + +      + +    Y+  + + +  K F L G ++G+ +
Sbjct:   59 NEVSNLHQYPQPINPELMDEISKFT--KMPTENIIVGGDGADEVIDNIMRILIDEGDEVIIPIPTFTQYAISAKIHGANIKWAKFDEENGFKLDVESVLNNITEKTKVIFLCTPNNPTGNVIPTEDIKKIVE---STDALVMIDHAY--IEYSKGEYDLTNWALKYDNVLVLRTFSKVFGLAGQRVGFGV 241          
BLAST of CX298057 vs. ExPASy Swiss-Prot
Match: 1A18_ARATH (1-aminocyclopropane-1-carboxylate synthase 8 OS=Arabidopsis thaliana GN=ACS8 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.883e-11
Identity = 54/198 (27.27%), Postives = 88/198 (44.44%), Query Frame = 2
Query:   65 HGVPEFNSAIASRFKKDSGLEV--DPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSM-AGAKIKCITLRPPE----FAIPIEELKSTISK---NTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAF-EMDHISIASL--------PGMYERTVTMNSLGKTFSLTGWKIG 601
            HG+P F +A+A    ++ G  V  +P K V +T+G T A    +  L +PGD  +L  P+Y  ++  L    GA+I  I  +         + +EE      K     + +L+  P NP G   TR ELN +        + + SDE+Y    F     IS+  +          +++R   + SL K   L G+++G
Sbjct:   86 HGLPSFKNAMADFMSENRGNRVSFNPNKLV-LTAGATPANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRTGAEIVPIQCKSANGFRITKVALEEAYEQAQKLNLKVKGVLITNPSNPLGTTTTRTELNHLLDFISRKKIHLISDEIYSGTVFTNPGFISVMEVLKDRKLENTDVFDRVHIVYSLSKDLGLPGFRVG 282          
The following BLAST results are available for this feature:
BLAST of CX298057 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 102
Match NameE-valueIdentityDescription
HIS8_METM57.883e-1124.21Histidinol-phosphate aminotransferase OS=Methanoco... [more]
1A18_ARATH7.883e-1127.271-aminocyclopropane-1-carboxylate synthase 8 OS=Ar... [more]

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Properties
Property NameValue
Genbank descriptionC06008B06SK RindPdig24 Citrus clementina cDNA clone C06008B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298057 ID=CX298057; Name=CX298057; organism=Citrus clementina; type=EST; length=677bp
AGGATTTTGTTAAGATGCAGCGATTCAAGCCATAAGGGATGGGAAGAATC
AATATGCTCGTGGACATGGGGTTCCAGAGTTCAACTCTGCCATTGCTTCC
CGGTTTAAGAAAGATTCTGGGCTCGAGGTTGACCCTGAAAAGGAAGTTAC
TGTTACCTCTGGGTGCACCGAAGCCATTGCTGCAACCATCTTAGGTTTGA
TTAATCCTGGAGATGAGGTGATCCTTTTTGCACCTTTCTATGATTCCTAT
GAAGCTACTCTCTCCATGGCTGGTGCTAAAATTAAATGCATCACATTGCG
CCCTCCAGAATTTGCCATCCCCATTGAAGAGCTCAAGTCTACAATCTCAA
AAAATACTCGTGCAATTCTTATGAACACTCCACATAACCCCACTGGAAAG
ATGTTCACTAGGGAGGAACTTAATGTTATTGCATCTCTTTGCATTGAGAA
TGATGTGTTGGTTTTTAGTGATGAGGTCTATGATAAGTTGGCTTTTGAAA
TGGATCACATTTCCATAGCCTCTCTTCCTGGAATGTATGAGCGTACTGTA
ACCATGAATTCCTTAGGGAAGACATTCTCTTTAACAGGGTGGAAGATCGG
GTGGGCAATAGCTCCACCGCACCTTACATGGGGGGTGCGGCAGGCACACT
CTTTTCTCACGTTTGCCACATCCACTC
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