CX298057

Overview
NameCX298057
Unique NameCX298057
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length677
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX298057 vs. ExPASy Swiss-Prot
Match: AAT_SYNY3 (Aspartate aminotransferase OS=Synechocystis sp. (strain PCC 6803) GN=aspC PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 6.643e-26
Identity = 61/201 (30.35%), Postives = 120/201 (59.70%), Query Frame = 2
Query:   14 DAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMA-GAKIKCITLRPPEFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIE-NDVLVFSDEVYDKLAFE-MDHISIASL-PGMYERTVTMNSLGKTFSLTGWKIGW 604
            +AA  A+ +GK +Y    G P    AIA + ++ + L  +    + VT+G   ++   +L +I  GDEVI+ AP++ SY   + +A G  +   T    ++ I  E+L+  I+  ++  ++N+P NPTG ++T  E+  +A++ +E  D+ V SDE+Y+++ ++  +H+SI ++   +++RT+  N   K++S+TGW++G+
Sbjct:   50 EAAKLALDEGKTRYGPAAGEPALRQAIAKKLREKNNLPYEAAN-ILVTNGGKHSLFNLMLAMIEQGDEVIIPAPYWLSYPEMVRLAEGTPVIVNTTAATDYKITPEQLRQAITSKSKLFVLNSPSNPTGAVYTPAEIRALAAVILEYEDLYVVSDEIYERILYDGTEHLSIGAVNDEIFQRTIISNGFAKSYSMTGWRVGY 249          
BLAST of CX298057 vs. ExPASy Swiss-Prot
Match: AAT_RICBR (Aspartate aminotransferase OS=Rickettsia bellii (strain RML369-C) GN=aatA PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.306e-25
Identity = 65/201 (32.34%), Postives = 117/201 (58.21%), Query Frame = 2
Query:   14 DAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSY-EATLSMAGAKIKCITLRPPEFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIEND-VLVFSDEVYDKLAFE-MDHISIASL-PGMYERTVTMNSLGKTFSLTGWKIGW 604
            +AAI+AI+DG  +Y    G+P    AI ++FK+++ ++ D E E+ V++G  + I    +  +N GDEVI+ AP++ SY +  L   G  +         F +  E L+  I+  T+ +++N+P NPTG  ++  EL  IA +  ++  V V SD++Y+ + F+     ++A + P + +R  T+N + K +S+TGW+IG+
Sbjct:   51 EAAIKAIKDGFTKYTNVEGIPALKEAIQAKFKRENNIDYDLE-EIIVSTGGKQVIYNLFMASLNKGDEVIIPAPYWVSYPDMVLLAEGTPVFANCGIESNFKLSGEALEQLITPKTKWLIINSPSNPTGASYSHSELKNIAEVLRKHPYVNVMSDDIYEHITFDGFKFYTLAEIAPDLKDRIFTVNGVSKAYSMTGWRIGY 250          
BLAST of CX298057 vs. ExPASy Swiss-Prot
Match: AATB1_RHIME (Aspartate aminotransferase B OS=Rhizobium meliloti GN=aatB PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.645e-24
Identity = 64/224 (28.57%), Postives = 122/224 (54.46%), Query Frame = 2
Query:   17 AAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPE-FAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIEND-VLVFSDEVYDKLAFE-MDHISIASL-PGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLTFATST 676
            AA  AI  G+ +Y    G PE   AI  +F++++GL  + + E+TV +G  + +   ++  ++PGDEVI+  P++ SY   + +   K   I       F +  E+L++ I+  TR +L+N+P NP+G  ++  +   +  + + +  V +  D++Y+ + ++    ++ A L PG+  RT+T+N + K +++TGW+IG+A  P  L   +    S  T   S+
Sbjct:   62 AASDAIHRGETKYTALDGTPELKKAIREKFQRENGLAYELD-EITVATGAKQILFNAMMASLDPGDEVIIPTPYWTSYSDIVHICEGKPVLIACDASSGFRLTAEKLEAAITPRTRWVLLNSPSNPSGAAYSAADYRPLLEVLLRHPHVWLLVDDMYEHIVYDGFRFVTPAQLEPGLKNRTLTVNGVSKAYAMTGWRIGYAGGPRELIKAMAVVQSQATSCPSS 284          
BLAST of CX298057 vs. ExPASy Swiss-Prot
Match: AATB2_RHIME (Aspartate aminotransferase B OS=Rhizobium meliloti GN=aatB PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.061e-23
Identity = 62/224 (27.68%), Postives = 124/224 (55.36%), Query Frame = 2
Query:   17 AAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPE-FAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIEND-VLVFSDEVYDKLAFE-MDHISIASL-PGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLTFATST 676
            AA  AI  G+ +Y    G PE   AI  +F++++GL  + + E+TV +G  + +   ++  ++PGDEV++  P++ SY   + +   K   I       F +  ++L++ I+  TR +L+N+P NP+G  ++  +   +  + +++  V +  D++Y+ + ++    ++ A L PG+ +RT+T+N + K +++TGW+IG+A  P  L   +    S  T   S+
Sbjct:   62 AASDAIHRGETKYTALDGTPELKKAIREKFQRENGLAYELD-EITVATGAKQILFNAMMASLDPGDEVVIPTPYWTSYSDIVQICEGKPILIACDASSGFRLTAQKLEAAITPRTRWVLLNSPSNPSGAAYSAADYRPLLDVLLKHPHVWLLVDDMYEHIVYDAFRFVTPARLEPGLKDRTLTVNGVSKAYAMTGWRIGYAGGPRALIKAMAVVQSQATSCPSS 284          
BLAST of CX298057 vs. ExPASy Swiss-Prot
Match: AAT_RICFE (Aspartate aminotransferase OS=Rickettsia felis GN=aatA PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.363e-23
Identity = 62/203 (30.54%), Postives = 119/203 (58.62%), Query Frame = 2
Query:   14 DAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMA-GAKIKCITLRPPEFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIE-NDVLVFSDEVYDKLAF-EMDHISIASL-PGMYERTVTMNSLGKTFSLTGWKIGWAI 610
            +AAI+AI+DG  +Y    G+P    AI  +FK+++ ++ + + E+ V++G  + I    +  ++ GD+VI+ AP++ SY   ++++ G  +         F +  E L+ +I+  T+ +++N+P NPTG  +  EEL  IA +  +   V V SD++Y+ + F +    ++A + P + ER  T+N + K +S+TGW+IG+ +
Sbjct:   51 EAAIKAIKDGFTKYTNVEGMPLLKQAIKDKFKRENNIDYELD-EIIVSTGGKQVIYNLFMASLDKGDKVIIPAPYWVSYPDMVALSTGTPVFVNCGIENNFKLSAEALERSITDKTKWLIINSPSNPTGASYNFEELENIAKVLRKYPHVNVMSDDIYEHITFDDFKFYTLAQIAPDLKERIFTVNGVSKAYSMTGWRIGYGV 252          
BLAST of CX298057 vs. ExPASy Swiss-Prot
Match: DAPAT_SYNFM (LL-diaminopimelate aminotransferase OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) GN=dapL PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.030e-23
Identity = 62/204 (30.39%), Postives = 105/204 (51.47%), Query Frame = 2
Query:   47 NQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITL-RPPEFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAF-EMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHS 652
            +QY    G+ +F  ++A  +K+  G+E+DP  EV    G  E +A   L +INPGD  ++  P Y  Y      AG +   + L R   F   ++ + + +++  + + +N P+NPTG    R+    + +   E DV+V  D  Y ++AF     +S   LPG  E  V  +SL KT+++TGW++G+A+    +  G+ Q  S
Sbjct:   64 HQYPSYSGMNDFKVSVAGWYKRRFGVELDPLSEVLTLIGSKEGLAHFPLAVINPGDLALVPTPAYPVYHVATMFAGGESYFMPLVRENGFLPDLDSIPADVARRAKVMFINYPNNPTGATAERDFFEKVIAFAREYDVIVCHDAAYTEMAFGGYRPLSFLELPGAGEVGVEFHSLSKTYNMTGWRLGFAVGNADILAGLGQVKS 267          
BLAST of CX298057 vs. ExPASy Swiss-Prot
Match: AAT_RICCN (Aspartate aminotransferase OS=Rickettsia conorii GN=aatA PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 6.874e-23
Identity = 61/201 (30.35%), Postives = 118/201 (58.71%), Query Frame = 2
Query:   14 DAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMA-GAKIKCITLRPPEFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIE-NDVLVFSDEVYDKLAF-EMDHISIASL-PGMYERTVTMNSLGKTFSLTGWKIGW 604
            + AI+AI+DG  +Y    G+P    AI  +FK+++ ++ + + E+ V++G  + I    +  ++ GDEVI+ AP++ SY   ++++ G  +         F +  E L+ +I+  T+ +++N+P NPTG  +  EEL  IA +  + + V V SD++Y+ + F +    ++A + P + +R  T+N + K +S+TGW+IG+
Sbjct:   51 EGAIKAIKDGFTKYTNVEGMPLLKQAIKDKFKRENNIDYELD-EIIVSTGGKQVIYNLFMASLDQGDEVIIPAPYWVSYPDMVALSTGTPVFVNCGIENNFKLSAEALERSITDKTKWLIINSPSNPTGASYNFEELENIAKVLRKYSHVNVMSDDIYEHITFDDFKFYTLAQIAPDLKKRIFTVNGVSKAYSMTGWRIGY 250          
BLAST of CX298057 vs. ExPASy Swiss-Prot
Match: AATC_RHIME (Putative aminotransferase aatC OS=Rhizobium meliloti GN=aatC PE=3 SV=2)

HSP 1 Score: 105.916 bits (263), Expect = 2.000e-22
Identity = 62/224 (27.68%), Postives = 113/224 (50.45%), Query Frame = 2
Query:   14 DAAIQAIRDGK-NQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPE-FAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAF-EMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLTFATST 676
            D   + ++D + ++Y+   G+P    A A+ + +  G++++PE +V  T G  E  A     +  PGD V+   P Y  +     MAG  I+ I++ P E F  P+E           A+++N P NPT ++ T +    + +   ++D++V SD  Y ++ F +    S+  +PG  + TV   S+ KTFS+ GW++G+A+    L   + +  S+L +   T
Sbjct:   50 DKLCEVVQDPRTHRYSSSKGIPGLRRAQAAYYARRFGVKLNPETQVVATLGSKEGFANMAQAITAPGDVVLCPNPTYPIHAFGFLMAGGVIRSISVEPDESFFPPLERAVRHSIPKPLALILNYPSNPTAQVATLDFYKDVIAFAKKHDIIVLSDLAYSEIYFDDAPPPSVLEVPGATDVTVEFTSMSKTFSMPGWRMGFAVGNERLIAALTRVKSYLDYGAFT 273          
BLAST of CX298057 vs. ExPASy Swiss-Prot
Match: AAT_RICTY (Aspartate aminotransferase OS=Rickettsia typhi GN=aatA PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.612e-22
Identity = 59/201 (29.35%), Postives = 118/201 (58.71%), Query Frame = 2
Query:   14 DAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMA-GAKIKCITLRPPEFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREEL-NVIASLCIENDVLVFSDEVYDKLAF-EMDHISIASL-PGMYERTVTMNSLGKTFSLTGWKIGW 604
            + AI +I+DG  +Y    G+P    AI ++FK+++ ++ + + E+ V++G  + I    +  ++ GDEVI+  P++ SY   ++++ G  I         F + +E L+ +I+  T+ +++N+P NPTG  +  +EL N+  +L    +V + SD++Y+ + F +    ++A + P + ER  T+N + K +S+TGW+IG+
Sbjct:   51 EVAITSIKDGFTKYTNVDGIPLLKQAIKNKFKRENNIDYELD-EIIVSTGGKQVIYNLFMASLDKGDEVIIPVPYWVSYPDMVALSTGTPIFVNCGIENNFKLTVEALERSITDKTKWLIINSPSNPTGAGYNCKELENIAKTLRKYPNVNIMSDDIYEHITFDDFKFYTLAQIAPDLKERIFTVNGVSKAYSMTGWRIGY 250          
BLAST of CX298057 vs. ExPASy Swiss-Prot
Match: AAT_RICPR (Aspartate aminotransferase OS=Rickettsia prowazekii GN=aatA PE=3 SV=2)

HSP 1 Score: 105.145 bits (261), Expect = 3.412e-22
Identity = 58/201 (28.86%), Postives = 118/201 (58.71%), Query Frame = 2
Query:   14 DAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMA-GAKIKCITLRPPEFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREEL-NVIASLCIENDVLVFSDEVYDKLAF-EMDHISIASL-PGMYERTVTMNSLGKTFSLTGWKIGW 604
            + AI +I+DG  +Y    G+P    AI ++FK+++ ++ + + E+ V++G  + I    +  ++ GDEVI+  P++ SY   ++++ G  +         F + +E L+ +I+  T+ +++N+P NPTG  +  +EL N+  +L    +V + SD++Y+ + F +    ++A + P + ER  T+N + K +S+TGW+IG+
Sbjct:   51 EVAITSIKDGFTKYTNVDGIPLLKQAIKNKFKRENNIDYELD-EIIVSTGGKQVIYNLFMASLDKGDEVIIPVPYWVSYPDMVALSTGTPVFVNCGIENNFKLSVEALEHSITDKTKWLIINSPSNPTGAGYNCKELENIAKTLRKYPNVNIMSDDIYEHITFDDFKFYTLAQIAPDLKERIFTVNGVSKAYSMTGWRIGY 250          
The following BLAST results are available for this feature:
BLAST of CX298057 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 102
Match NameE-valueIdentityDescription
AAT_SYNY36.643e-2630.35Aspartate aminotransferase OS=Synechocystis sp. (s... [more]
AAT_RICBR4.306e-2532.34Aspartate aminotransferase OS=Rickettsia bellii (s... [more]
AATB1_RHIME3.645e-2428.57Aspartate aminotransferase B OS=Rhizobium meliloti... [more]
AATB2_RHIME1.061e-2327.68Aspartate aminotransferase B OS=Rhizobium meliloti... [more]
AAT_RICFE2.363e-2330.54Aspartate aminotransferase OS=Rickettsia felis GN=... [more]
DAPAT_SYNFM4.030e-2330.39LL-diaminopimelate aminotransferase OS=Syntrophoba... [more]
AAT_RICCN6.874e-2330.35Aspartate aminotransferase OS=Rickettsia conorii G... [more]
AATC_RHIME2.000e-2227.68Putative aminotransferase aatC OS=Rhizobium melilo... [more]
AAT_RICTY2.612e-2229.35Aspartate aminotransferase OS=Rickettsia typhi GN=... [more]
AAT_RICPR3.412e-2228.86Aspartate aminotransferase OS=Rickettsia prowazeki... [more]

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Properties
Property NameValue
Genbank descriptionC06008B06SK RindPdig24 Citrus clementina cDNA clone C06008B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298057 ID=CX298057; Name=CX298057; organism=Citrus clementina; type=EST; length=677bp
AGGATTTTGTTAAGATGCAGCGATTCAAGCCATAAGGGATGGGAAGAATC
AATATGCTCGTGGACATGGGGTTCCAGAGTTCAACTCTGCCATTGCTTCC
CGGTTTAAGAAAGATTCTGGGCTCGAGGTTGACCCTGAAAAGGAAGTTAC
TGTTACCTCTGGGTGCACCGAAGCCATTGCTGCAACCATCTTAGGTTTGA
TTAATCCTGGAGATGAGGTGATCCTTTTTGCACCTTTCTATGATTCCTAT
GAAGCTACTCTCTCCATGGCTGGTGCTAAAATTAAATGCATCACATTGCG
CCCTCCAGAATTTGCCATCCCCATTGAAGAGCTCAAGTCTACAATCTCAA
AAAATACTCGTGCAATTCTTATGAACACTCCACATAACCCCACTGGAAAG
ATGTTCACTAGGGAGGAACTTAATGTTATTGCATCTCTTTGCATTGAGAA
TGATGTGTTGGTTTTTAGTGATGAGGTCTATGATAAGTTGGCTTTTGAAA
TGGATCACATTTCCATAGCCTCTCTTCCTGGAATGTATGAGCGTACTGTA
ACCATGAATTCCTTAGGGAAGACATTCTCTTTAACAGGGTGGAAGATCGG
GTGGGCAATAGCTCCACCGCACCTTACATGGGGGGTGCGGCAGGCACACT
CTTTTCTCACGTTTGCCACATCCACTC
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