CX298057

Overview
NameCX298057
Unique NameCX298057
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length677
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX298057 vs. ExPASy Swiss-Prot
Match: YFBQ_SHIFL (Uncharacterized aminotransferase yfbQ OS=Shigella flexneri GN=yfbQ PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.070e-19
Identity = 53/189 (28.04%), Postives = 109/189 (57.67%), Query Frame = 2
Query:   53 YARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAK-IKCITLRPPEFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAF-EMDHISIASL-PGMYERTVTMNSLGKTFSLTGWKIGWAI 610
            Y    G+     AI   ++     +V  E ++ + +G +E I   +  L+N GDE+++ AP Y  + A +S++  K +  +     ++   ++++++ I+  TR I++  P+NPTG ++++E L  I  +  ++++++F+DE+YDK+ + + +H SIA L P +   T+T N L KT+ + G++ GW +
Sbjct:   68 YCDSKGLYSARKAIMQHYQARGMRDVTVE-DIYIGNGVSELIVQAMQALLNSGDEMLVPAPDYPLWTAAVSLSSGKAVHYLCDESSDWFPDLDDIRAKITPRTRGIVIINPNNPTGAVYSKELLMEIVEIARQHNLIIFADEIYDKILYDDAEHHSIAPLAPDLL--TITFNGLSKTYRVAGFRQGWMV 253          
BLAST of CX298057 vs. ExPASy Swiss-Prot
Match: YFBQ_ECOLI (Uncharacterized aminotransferase yfbQ OS=Escherichia coli (strain K12) GN=yfbQ PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.070e-19
Identity = 53/189 (28.04%), Postives = 109/189 (57.67%), Query Frame = 2
Query:   53 YARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAK-IKCITLRPPEFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAF-EMDHISIASL-PGMYERTVTMNSLGKTFSLTGWKIGWAI 610
            Y    G+     AI   ++     +V  E ++ + +G +E I   +  L+N GDE+++ AP Y  + A +S++  K +  +     ++   ++++++ I+  TR I++  P+NPTG ++++E L  I  +  ++++++F+DE+YDK+ + + +H SIA L P +   T+T N L KT+ + G++ GW +
Sbjct:   68 YCDSKGLYSARKAIMQHYQARGMRDVTVE-DIYIGNGVSELIVQAMQALLNSGDEMLVPAPDYPLWTAAVSLSSGKAVHYLCDESSDWFPDLDDIRAKITPRTRGIVIINPNNPTGAVYSKELLMEIVEIARQHNLIIFADEIYDKILYDDAEHHSIAPLAPDLL--TITFNGLSKTYRVAGFRQGWMV 253          
BLAST of CX298057 vs. ExPASy Swiss-Prot
Match: YFBQ_ECOL6 (Uncharacterized aminotransferase yfbQ OS=Escherichia coli O6 GN=yfbQ PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.070e-19
Identity = 53/189 (28.04%), Postives = 109/189 (57.67%), Query Frame = 2
Query:   53 YARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAK-IKCITLRPPEFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAF-EMDHISIASL-PGMYERTVTMNSLGKTFSLTGWKIGWAI 610
            Y    G+     AI   ++     +V  E ++ + +G +E I   +  L+N GDE+++ AP Y  + A +S++  K +  +     ++   ++++++ I+  TR I++  P+NPTG ++++E L  I  +  ++++++F+DE+YDK+ + + +H SIA L P +   T+T N L KT+ + G++ GW +
Sbjct:   68 YCDSKGLYSARKAIMQHYQARGMRDVTVE-DIYIGNGVSELIVQAMQALLNSGDEMLVPAPDYPLWTAAVSLSSGKAVHYLCDESSDWFPDLDDIRAKITPRTRGIVIINPNNPTGAVYSKELLMEIVEIARQHNLIIFADEIYDKILYDDAEHHSIAPLAPDLL--TITFNGLSKTYRVAGFRQGWMV 253          
BLAST of CX298057 vs. ExPASy Swiss-Prot
Match: DAPAT_CARHZ (LL-diaminopimelate aminotransferase OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=dapL PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.703e-19
Identity = 52/190 (27.37%), Postives = 97/190 (51.05%), Query Frame = 2
Query:   47 NQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPEFAIP-IEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHI-SIASLPGMYERTVTMNSLGKTFSLTGWKIGWAI 610
            +QY    G+  +  A+A+ + +  G+E+DP+ EV    G  E IA      ++PGD V++  P Y  YE    +AG     + L+P    +P ++ +   +++  + + +N P+NPTG +        +     + ++LV  D  Y ++ F+     S   + G  +  +  +SL KT+++TGW+IGWA+
Sbjct:   62 HQYPSSVGMLSYRQAVAAWYARRFGVELDPKTEVVSLLGSKEGIAHISWCYVDPGDLVLVPDPGYPVYEGGTILAGGTTYKMPLKPENGFLPDLDSIPEEVARKAKLMFINYPNNPTGAVADLGFFEKVVHFAKKYEILVCHDAAYSEITFDGYRAPSFLEVKGAKDVGIEFHSLSKTYNMTGWRIGWAV 251          
BLAST of CX298057 vs. ExPASy Swiss-Prot
Match: DAPAT_DESAD (LL-diaminopimelate aminotransferase OS=Desulfovibrio salexigens (strain ATCC 14822 / DSM 2638 / NCIB 8403 / VKM B-1763) GN=dapL PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.530e-19
Identity = 56/200 (28.00%), Postives = 99/200 (49.50%), Query Frame = 2
Query:   47 NQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPEFAIP-IEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDH--ISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGV 637
            +QY    G+  F  A+A  +K+   +E+D  KEV    G  E IA   L  +NPGD V++ +P Y  Y      AG +++ + L      +P ++ +        +   +N P+NPT    T E    + +   +++V++ +D  Y ++ ++ D   ISI   PG  +  +  +SL KT+++TGW+ G A+    L  G+
Sbjct:   65 HQYPSYVGLLTFRQAVADWYKERFDVELDATKEVVSLIGSKEGIAHFPLAFVNPGDLVLVASPNYPVYPVASGFAGGEVEIVPLLEENDFLPNLDAISDEKWDKCKIFFVNYPNNPTSATATPEFYAELVAKAKKHNVIIAADAAYTEVYYDEDKKPISILETPGAKDVAIEFHSLSKTYNMTGWRCGMAVGNASLVAGL 264          
BLAST of CX298057 vs. ExPASy Swiss-Prot
Match: MTNE_BACSU (Transaminase mtnE OS=Bacillus subtilis GN=mtnE PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.611e-19
Identity = 58/222 (26.13%), Postives = 111/222 (50.00%), Query Frame = 2
Query:   26 QAIRDGKN-QYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPEFAIP-IEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFE-MDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVR--QAHSFLTFATST 676
            +A+ D +N +Y+   G     SA A+ +K++ G+++DPE EV V  G    +      L+NPGD +++  P Y  Y + +++A AK++ + L      +P    + + I +  + + +N P+NPTG + T E          EN + V  D  Y  + F+    +S     G  +  + + +L KT+++ GW++G+A+    +   +   Q H F++   +T
Sbjct:   56 RAVADPENHKYSSFRGSYRLKSAAAAFYKREYGIDLDPETEVAVLFGGKAGLVELPQCLLNPGDTILVPDPGYPDYWSGVTLAKAKMEMMPLVKDRAFLPDYSSITAEIREQAKLMYLNYPNNPTGAVATSEFFEDTVRFAAENGICVVHDFAYGAVGFDGCKPLSFLQTEGAKDIGIEIYTLSKTYNMAGWRVGFAVGNASVIEAINLYQDHMFVSLFRAT 277          
BLAST of CX298057 vs. ExPASy Swiss-Prot
Match: DAPT2_ANAVT (LL-diaminopimelate aminotransferase 2 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=dapL2 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.611e-19
Identity = 54/210 (25.71%), Postives = 106/210 (50.48%), Query Frame = 2
Query:   26 QAIRDGKNQ-YARGHGVPEFNSAIASRFKKDSGL-EVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPEFAIP-IEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFE-MDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQ 643
            +AI +  N  Y    G  EF  A     ++  G+ +++P  EV  + G  EAI  T L  +  GD  ++  P Y  Y  +   AG +   + L+     +P ++ +   +++  + + +N P+NPTG + T E    + + C ++ +L+  D  Y ++A++     S+  +PG  +  +  +SL K++++TGW+IG+A+   +   G+ Q
Sbjct:   54 EAIDEASNHNYPPYEGTQEFREAAVKWMERRFGVVDLNPNTEVVSSIGSKEAIHNTFLAFVEAGDYTLIPDPGYPVYRTSTIFAGGEPFTMPLKAENKFLPDLDLIPEEVARKAKMLWVNYPNNPTGALATLEFFEELVAFCQQHSILLCHDHAYSEMAYDGYKPPSVLQIPGAKDIAIEFHSLSKSYNMTGWRIGFAVGNAYAIQGLSQ 263          
BLAST of CX298057 vs. ExPASy Swiss-Prot
Match: AAT_MYCTU (Probable aspartate aminotransferase OS=Mycobacterium tuberculosis GN=aspC PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 7.865e-19
Identity = 57/193 (29.53%), Postives = 109/193 (56.48%), Query Frame = 2
Query:   53 YARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAK-IKCITLRPPEFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAF-EMDHISIASL-PGMYERTVTMNSLGKTFSLTGWKIGW-AIAPP 619
            Y+   G+     A+ +R++   G       +V + +G +E I  T+  L++ GD+V++ +P Y  + A+ S+AG   +  +      +   I +L+S I++ T+A+++  P+NPTG +++ E L  +  L  ++ +L+ +DE+YDK+ + +  HIS+AS+ P M    +T N L K + + G++ GW AI  P
Sbjct:   92 YSDSQGILSARRAVVTRYELVPGFPRFDVDDVYLGNGVSELITMTLQALLDNGDQVLIPSPDYPLWTASTSLAGGTPVHYLCDETQGWQPDIADLESKITERTKALVVINPNNPTGAVYSCEILTQMVDLARKHQLLLLADEIYDKILYDDAKHISLASIAPDML--CLTFNGLSKAYRVAGYRAGWLAITGP 282          
BLAST of CX298057 vs. ExPASy Swiss-Prot
Match: AAT_MYCBO (Probable aspartate aminotransferase OS=Mycobacterium bovis GN=aspC PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 7.865e-19
Identity = 57/193 (29.53%), Postives = 109/193 (56.48%), Query Frame = 2
Query:   53 YARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAK-IKCITLRPPEFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAF-EMDHISIASL-PGMYERTVTMNSLGKTFSLTGWKIGW-AIAPP 619
            Y+   G+     A+ +R++   G       +V + +G +E I  T+  L++ GD+V++ +P Y  + A+ S+AG   +  +      +   I +L+S I++ T+A+++  P+NPTG +++ E L  +  L  ++ +L+ +DE+YDK+ + +  HIS+AS+ P M    +T N L K + + G++ GW AI  P
Sbjct:   92 YSDSQGILSARRAVVTRYELVPGFPRFDVDDVYLGNGVSELITMTLQALLDNGDQVLIPSPDYPLWTASTSLAGGTPVHYLCDETQGWQPDIADLESKITERTKALVVINPNNPTGAVYSCEILTQMVDLARKHQLLLLADEIYDKILYDDAKHISLASIAPDML--CLTFNGLSKAYRVAGYRAGWLAITGP 282          
BLAST of CX298057 vs. ExPASy Swiss-Prot
Match: DAPAT_DESAP (LL-diaminopimelate aminotransferase OS=Desulforudis audaxviator (strain MP104C) GN=dapL PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.027e-18
Identity = 53/189 (28.04%), Postives = 95/189 (50.26%), Query Frame = 2
Query:   47 NQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPEFAIP-IEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFE-MDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWA 607
            +QY    G+P +  A+A  + +  G+E+DP++EV    G  E IA      ++PGD V++  P Y  Y     +AG     + L      +P +  + +  ++  + + +N P+NPTG + ++E    +     E  +LV  D  Y ++AF+     S   + G  E  +  +S+ KT+++TGW+ GWA
Sbjct:   64 HQYPSSAGMPAYRRAVADWYARRFGVELDPQREVVSLIGSKEGIAHLPWCFVDPGDVVLVPDPGYPVYAGGTILAGGIPHPVPLTAGNGFLPDLAAIPAETARRAKVMFINYPNNPTGAVASKEFFARVVDFAREYGILVCHDAAYSEIAFDGYRPPSFLEVAGAREVGIEFHSVSKTYNMTGWRAGWA 252          
The following BLAST results are available for this feature:
BLAST of CX298057 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 102
Match NameE-valueIdentityDescription
YFBQ_SHIFL2.070e-1928.04Uncharacterized aminotransferase yfbQ OS=Shigella ... [more]
YFBQ_ECOLI2.070e-1928.04Uncharacterized aminotransferase yfbQ OS=Escherich... [more]
YFBQ_ECOL62.070e-1928.04Uncharacterized aminotransferase yfbQ OS=Escherich... [more]
DAPAT_CARHZ2.703e-1927.37LL-diaminopimelate aminotransferase OS=Carboxydoth... [more]
DAPAT_DESAD3.530e-1928.00LL-diaminopimelate aminotransferase OS=Desulfovibr... [more]
MTNE_BACSU4.611e-1926.13Transaminase mtnE OS=Bacillus subtilis GN=mtnE PE=... [more]
DAPT2_ANAVT4.611e-1925.71LL-diaminopimelate aminotransferase 2 OS=Anabaena ... [more]
AAT_MYCTU7.865e-1929.53Probable aspartate aminotransferase OS=Mycobacteri... [more]
AAT_MYCBO7.865e-1929.53Probable aspartate aminotransferase OS=Mycobacteri... [more]
DAPAT_DESAP1.027e-1828.04LL-diaminopimelate aminotransferase OS=Desulforudi... [more]

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Properties
Property NameValue
Genbank descriptionC06008B06SK RindPdig24 Citrus clementina cDNA clone C06008B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298057 ID=CX298057; Name=CX298057; organism=Citrus clementina; type=EST; length=677bp
AGGATTTTGTTAAGATGCAGCGATTCAAGCCATAAGGGATGGGAAGAATC
AATATGCTCGTGGACATGGGGTTCCAGAGTTCAACTCTGCCATTGCTTCC
CGGTTTAAGAAAGATTCTGGGCTCGAGGTTGACCCTGAAAAGGAAGTTAC
TGTTACCTCTGGGTGCACCGAAGCCATTGCTGCAACCATCTTAGGTTTGA
TTAATCCTGGAGATGAGGTGATCCTTTTTGCACCTTTCTATGATTCCTAT
GAAGCTACTCTCTCCATGGCTGGTGCTAAAATTAAATGCATCACATTGCG
CCCTCCAGAATTTGCCATCCCCATTGAAGAGCTCAAGTCTACAATCTCAA
AAAATACTCGTGCAATTCTTATGAACACTCCACATAACCCCACTGGAAAG
ATGTTCACTAGGGAGGAACTTAATGTTATTGCATCTCTTTGCATTGAGAA
TGATGTGTTGGTTTTTAGTGATGAGGTCTATGATAAGTTGGCTTTTGAAA
TGGATCACATTTCCATAGCCTCTCTTCCTGGAATGTATGAGCGTACTGTA
ACCATGAATTCCTTAGGGAAGACATTCTCTTTAACAGGGTGGAAGATCGG
GTGGGCAATAGCTCCACCGCACCTTACATGGGGGGTGCGGCAGGCACACT
CTTTTCTCACGTTTGCCACATCCACTC
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