CX298057

Overview
NameCX298057
Unique NameCX298057
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length677
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX298057 vs. ExPASy Swiss-Prot
Match: ATTY_MOUSE (Tyrosine aminotransferase OS=Mus musculus GN=Tat PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 9.614e-17
Identity = 53/197 (26.90%), Postives = 96/197 (48.73%), Query Frame = 2
Query:   29 AIRDGK-NQYARGHGVPEFNSAIASRFK-KDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPE-FAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAI 610
            A+  GK N YA   G       +AS +   ++ LE    K+V +TSGC++AI   +  L NPG  +++  P +  Y       G ++K   L P + + I +++L+S I + T  +++N P NP G +F++  L  I ++     V + +DE+Y  + F        +        ++   L K + + GW++GW +
Sbjct:  100 ALDSGKYNGYAPSIGYLSSREEVASYYHCPEAPLEA---KDVILTSGCSQAIELCLAVLANPGQNILIPRPGFSLYRTLAESMGIEVKLYNLLPEKSWEIDLKQLESLIDEKTACLVVNNPSNPCGSVFSKRHLQKILAVAERQCVPILADEIYGDMVFSDCKYEPMATLSTNVPILSCGGLAKRWLVPGWRLGWIL 293          
BLAST of CX298057 vs. ExPASy Swiss-Prot
Match: ATTY_HUMAN (Tyrosine aminotransferase OS=Homo sapiens GN=TAT PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.797e-16
Identity = 53/197 (26.90%), Postives = 96/197 (48.73%), Query Frame = 2
Query:   29 AIRDGK-NQYARGHGVPEFNSAIASRFK-KDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPE-FAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAI 610
            A+  GK N YA   G       IAS +   ++ LE    K+V +TSGC++AI   +  L NPG  +++  P +  Y+      G ++K   L P + + I +++L+  I + T  +++N P NP G +F++  L  I ++     V + +DE+Y  + F        +        ++   L K + + GW++GW +
Sbjct:  100 ALDSGKYNGYAPSIGFLSSREEIASYYHCPEAPLEA---KDVILTSGCSQAIDLCLAVLANPGQNILVPRPGFSLYKTLAESMGIEVKLYNLLPEKSWEIDLKQLEYLIDEKTACLIVNNPSNPCGSVFSKRHLQKILAVAARQCVPILADEIYGDMVFSDCKYEPLATLSTDVPILSCGGLAKRWLVPGWRLGWIL 293          
BLAST of CX298057 vs. ExPASy Swiss-Prot
Match: DAPAT_DEHE1 (LL-diaminopimelate aminotransferase OS=Dehalococcoides ethenogenes (strain 195) GN=dapL PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.772e-16
Identity = 51/206 (24.76%), Postives = 99/206 (48.06%), Query Frame = 2
Query:   47 NQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPEFAIP-IEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFE-MDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFL 658
            ++Y    G+P    A+A  ++K  G++++P+ EV    G  E I       ++PGD  ++  P Y  Y  +  +AGA++  + L      +P    +   +    + + +N P+NPTG +   +     A    ++++ V  D  Y ++AF+    +S     G  E  +  +SL K++++TGW+IG A+    +   +R+  S L
Sbjct:   62 HRYPETEGLPVLRKAMAEWYEKRFGVKLNPDTEVLPLIGSKEGIGHAAWCFLDPGDVALVPDPAYPVYAISSQLAGAEVFYMPLNKENNFLPDFNAIPQDVLSKAKILWINYPNNPTGAVAGLDFFKEAAEFAAKHNLAVCHDGPYSEIAFDGYRPVSFLEADGAKEVGIEFHSLSKSYNMTGWRIGMAVGNAKMIDALRRFKSNL 267          
BLAST of CX298057 vs. ExPASy Swiss-Prot
Match: ATTY_DICDI (Tyrosine aminotransferase OS=Dictyostelium discoideum GN=tat PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.813e-15
Identity = 58/200 (29.00%), Postives = 96/200 (48.00%), Query Frame = 2
Query:   14 DAAIQAIRDGK-NQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPE-FAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAF-EMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGW 604
            D  I+ I+  K N Y    G      A+A   +  +       K++ V SG + AI   I  L+N GD +++  P +  YE T       +K   L   + F + +E L+S I   T+AIL+N P NP G +++++ L  I  +  E  + + +DE+Y  L F E     +ASL       +++  + K F + GW++GW
Sbjct:   64 DLLIENIKSSKFNGYPPSTGYEIAREAVAKYVETPTSKLTS--KDIIVASGASGAIELAIGVLLNEGDNILVPKPGFPLYECTSKTKFINVKHYNLLEKQGFNVDLEHLRSLIDDKTKAILVNNPSNPCGIVYSKQHLLDIIQVAREYCLPIIADEIYSDLTFGEHKFYPMASLTDKVP-ILSIGGIAKRFLVPGWRLGW 260          
BLAST of CX298057 vs. ExPASy Swiss-Prot
Match: CBL_BACSU (Cystathionine beta-lyase patB OS=Bacillus subtilis GN=patB PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.890e-15
Identity = 56/211 (26.54%), Postives = 107/211 (50.71%), Query Frame = 2
Query:   14 DAAIQAIRDGKNQYARGHGVPEFNS--AIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPE--FAIPIEELKSTISK-NTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVY-DKLAFEMDHISIASLPGMY-ERTVTMNSLGKTFSLTGWKIGWAIAPPHL 625
            +A  +A+++  +    G+  P+  +  A+    +   G +V+PE  +T + G   A++  +     PGD+V++  P Y  +   +   G  I    L   +  +AI  E+L++ +S  +    ++  PHNP+G+ ++RE+L  +  LC+E+ V V SDE++ D + +   H   ASL   + + +VT  +  KTF++ G +    I P  L
Sbjct:   43 EAITEALKERLDHGIFGYTTPDQKTKDAVCGWMQNRHGWKVNPES-ITFSPGVVTALSMAVQAFTEPGDQVVVQPPVYTPFYHMVEKNGRHILHNPLLEKDGAYAIDFEDLETKLSDPSVTLFILCNPHNPSGRSWSREDLLKLGELCLEHGVTVVSDEIHSDLMLYGHKHTPFASLSDDFADISVTCAAPSKTFNIAGLQASAIIIPDRL 252          
BLAST of CX298057 vs. ExPASy Swiss-Prot
Match: AAT2_BACSU (Probable aspartate aminotransferase OS=Bacillus subtilis GN=ywfG PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 8.999e-15
Identity = 57/222 (25.68%), Postives = 106/222 (47.75%), Query Frame = 2
Query:   23 IQAIRDGK-----NQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPEFAIP-IEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTV--TMNSLGKTFSLTGWKIGWAIAPPHLTWGVR--QAHSFL 658
            ++A+R+       + Y    G P    AIA+ +K++ G+ ++PE EV +  G    +      L+NPGD  ++  P Y  Y + ++MA A++  + L      +P  E++   + +  + + +N P+NPTG +         A+   E+++ +  D  Y   AFE D    + L     +TV   + S  KTF++ GW++ +A+    +   V   Q H F+
Sbjct:   51 VEALREASLNPSFHGYGPFRGYPFLKEAIAAFYKREYGVTINPETEVALFGGGKAGLYVLTQCLLNPGDIALVPNPGYPEYLSGITMARAELYEMPLYEENGYLPDFEKIDPAVLEKAKLMFLNYPNNPTGAVADAAFYAKAAAFAKEHNIHLIHDFAYG--AFEFDQKPASFLEAEDAKTVGAELYSFSKTFNMAGWRMAFAVGNEKIIQAVNEFQDHVFV 270          
BLAST of CX298057 vs. ExPASy Swiss-Prot
Match: AAT_PYRKO (Aspartate aminotransferase OS=Pyrococcus kodakaraensis GN=aspC PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.175e-14
Identity = 58/200 (29.00%), Postives = 100/200 (50.00%), Query Frame = 2
Query:   14 DAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPEFAIP-IEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAI 610
            + A++++R G+  Y    G+ E    IA    +  G+  D   EV V  G    IAA I        +V + +P +++Y         +++ I     E  IP +EE+K+ +      I++N P+NPTG++ + +E+  +  +  EN V V SDEVY +L+F            +YE  VT+    K +S+TG+++G+AI
Sbjct:   35 EEAVESLRRGETGYTSTGGIRELRERIA----EFEGVSAD---EVIVAPGAKILIAAEIAS----AKKVAVVSPRWNAYSLIARQFWREVEVIKTTLDERWIPRVEEIKADL------IIINYPNNPTGRVLSGKEIRGLLDVAEENGVKVLSDEVYAELSF----TRFTPARELYENVVTVKGFSKLYSMTGFRLGYAI 213          
BLAST of CX298057 vs. ExPASy Swiss-Prot
Match: Y1527_METMP (Uncharacterized aminotransferase MMP1527 OS=Methanococcus maripaludis GN=MMP1527 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.618e-14
Identity = 49/194 (25.26%), Postives = 87/194 (44.85%), Query Frame = 2
Query:   38 DGKNQYARGH---GVPEFNSAIASRFKKDSGL-EVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPEFAIP-IEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGW 604
            + K    RG+   GV      I    +K  G+ ++DP  EV  + G   A+A      INPGD  ++  P Y          G  ++ + L      +P ++ +   + +N + + +N P+NPTG   T++          END++V  D  Y  L +    +S  S+    E  V ++S  K +++TGW++ +
Sbjct:   69 EAKKHVNRGYSDNGVQALKDEIPIYLEKIFGVKDLDPVNEVVHSIGSKPALAYITSVFINPGDVTLMTVPGYPVTATHTKWYGGSVETLPLLEKNNFLPELDAISKEVRENAKILYLNYPNNPTGAQATKKFYKEAVDFAFENDLIVIQDAAYAALTYGDKPLSFLSVKDAKEVGVEIHSFSKAYNMTGWRLAF 262          
BLAST of CX298057 vs. ExPASy Swiss-Prot
Match: HIS8_METVS (Histidinol-phosphate aminotransferase OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=hisC PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.449e-13
Identity = 50/184 (27.17%), Postives = 84/184 (45.65%), Query Frame = 2
Query:   65 HGVPE-FNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITL-RPPEFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAI 610
            H  PE  NS +        G  V  E  +    G  E I   +  LI+ GDEVI+  P +  Y  +  + GAKIK     +  +F + +E + + I++ T+AI + TP+NPTG + + E++  I       D L+  D  Y  + +      +      Y+  + + +  K F L G +IG+ +
Sbjct:   65 HQYPEPLNSELLGEISSFIG--VPCENIIIGGDGADEVIDNIMRILIDEGDEVIIPIPTFTQYAISAKIHGAKIKWAKFDKEKDFKLDVESVLNNITEKTKAIFLCTPNNPTGNVISNEDIKKIIE---STDALIMIDHAY--IEYSKKEYDLTQWALKYDNVLVLRTFSKVFGLAGQRIGYGV 241          
BLAST of CX298057 vs. ExPASy Swiss-Prot
Match: HIS8_METMP (Histidinol-phosphate aminotransferase OS=Methanococcus maripaludis GN=hisC PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.876e-12
Identity = 49/190 (25.79%), Postives = 86/190 (45.26%), Query Frame = 2
Query:   47 NQYARGHGVPE-FNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPE-FAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAI 610
            N+ +  H  P+  N  +     K + + V  E  +    G  E I   +  LI+ GDEVI+  P +  Y  +  + GA IK         F + +E + + I++ T+AI + TP+NPTG +   E++  I       D LV  D  Y  + +  +   + S    Y+  + + +  K F L G ++G+ +
Sbjct:   59 NEVSNLHQYPQPINPELMDEISKFTKMPV--ENIIVGGDGADEVIDNIMRILIDEGDEVIIPIPTFTQYAISAKIHGANIKWAKFDEENGFKLDVESVLNNITEKTKAIFLCTPNNPTGNVIPTEDIKKIVE---STDALVMIDHAY--IEYSKEEYDLTSWALKYDNVLVLRTFSKVFGLAGQRVGYGV 241          
The following BLAST results are available for this feature:
BLAST of CX298057 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 102
Match NameE-valueIdentityDescription
ATTY_MOUSE9.614e-1726.90Tyrosine aminotransferase OS=Mus musculus GN=Tat P... [more]
ATTY_HUMAN2.797e-1626.90Tyrosine aminotransferase OS=Homo sapiens GN=TAT P... [more]
DAPAT_DEHE14.772e-1624.76LL-diaminopimelate aminotransferase OS=Dehalococco... [more]
ATTY_DICDI1.813e-1529.00Tyrosine aminotransferase OS=Dictyostelium discoid... [more]
CBL_BACSU6.890e-1526.54Cystathionine beta-lyase patB OS=Bacillus subtilis... [more]
AAT2_BACSU8.999e-1525.68Probable aspartate aminotransferase OS=Bacillus su... [more]
AAT_PYRKO1.175e-1429.00Aspartate aminotransferase OS=Pyrococcus kodakarae... [more]
Y1527_METMP2.618e-1425.26Uncharacterized aminotransferase MMP1527 OS=Methan... [more]
HIS8_METVS6.449e-1327.17Histidinol-phosphate aminotransferase OS=Methanoco... [more]
HIS8_METMP1.876e-1225.79Histidinol-phosphate aminotransferase OS=Methanoco... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC06008B06SK RindPdig24 Citrus clementina cDNA clone C06008B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298057 ID=CX298057; Name=CX298057; organism=Citrus clementina; type=EST; length=677bp
AGGATTTTGTTAAGATGCAGCGATTCAAGCCATAAGGGATGGGAAGAATC
AATATGCTCGTGGACATGGGGTTCCAGAGTTCAACTCTGCCATTGCTTCC
CGGTTTAAGAAAGATTCTGGGCTCGAGGTTGACCCTGAAAAGGAAGTTAC
TGTTACCTCTGGGTGCACCGAAGCCATTGCTGCAACCATCTTAGGTTTGA
TTAATCCTGGAGATGAGGTGATCCTTTTTGCACCTTTCTATGATTCCTAT
GAAGCTACTCTCTCCATGGCTGGTGCTAAAATTAAATGCATCACATTGCG
CCCTCCAGAATTTGCCATCCCCATTGAAGAGCTCAAGTCTACAATCTCAA
AAAATACTCGTGCAATTCTTATGAACACTCCACATAACCCCACTGGAAAG
ATGTTCACTAGGGAGGAACTTAATGTTATTGCATCTCTTTGCATTGAGAA
TGATGTGTTGGTTTTTAGTGATGAGGTCTATGATAAGTTGGCTTTTGAAA
TGGATCACATTTCCATAGCCTCTCTTCCTGGAATGTATGAGCGTACTGTA
ACCATGAATTCCTTAGGGAAGACATTCTCTTTAACAGGGTGGAAGATCGG
GTGGGCAATAGCTCCACCGCACCTTACATGGGGGGTGCGGCAGGCACACT
CTTTTCTCACGTTTGCCACATCCACTC
back to top