CX298057

Overview
NameCX298057
Unique NameCX298057
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length677
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX298057 vs. ExPASy Swiss-Prot
Match: 1A15_ARATH (1-aminocyclopropane-1-carboxylate synthase 5 OS=Arabidopsis thaliana GN=ACS5 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.075e-11
Identity = 54/198 (27.27%), Postives = 88/198 (44.44%), Query Frame = 2
Query:   65 HGVPEFNSAIASRFKKDSGLEV--DPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSM-AGAKIKCITLRPPE-FAIPIEELKSTISK------NTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDH-ISIASL--------PGMYERTVTMNSLGKTFSLTGWKIG 601
            HG+PEF  A+A   ++  G  V  DP+K + + +G T A    +  L  PGD  +L  P+Y  ++  L    GA+I  I       F I    L+    +        + +L+  P NP G   TR ELN++       ++ + SDE+Y    F  +  IS+  +          + +R   + SL K   L G+++G
Sbjct:   86 HGMPEFKKAMAEFMEEIRGNRVTFDPKK-IVLAAGSTSANETLMFCLAEPGDAFLLPTPYYPGFDRDLKWRTGAEIVPIHCSSSNGFQITESALQQAYQQAQKLDLKVKGVLVTNPSNPLGTALTRRELNLLVDFITSKNIHLISDEIYSGTMFGFEQFISVMDVLKDKKLEDTEVSKRVHVVYSLSKDLGLPGFRVG 282          
BLAST of CX298057 vs. ExPASy Swiss-Prot
Match: 1A14_SOLLC (1-aminocyclopropane-1-carboxylate synthase 4 OS=Solanum lycopersicum GN=ACS4 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.709e-11
Identity = 53/194 (27.32%), Postives = 92/194 (47.42%), Query Frame = 2
Query:   65 HGVPEFNSAIASRFKKDSGLEVDPE-KEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSM-AGAKIKCITLRP-PEFAIPIEELKSTISKNTRA------ILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEM-DHISIASLPG-----MYERTVTMNSLGKTFSLTGWKIG 601
            HG+PEF +AIA   +K  G +V  + K V +  G T A    IL L +PGD  ++  P+Y  +   L   +G ++  I+ +    F I IE ++    K  +A      +++  P NP G +  R+ L  I++   E+++ +  DE+Y    F     +SIA +         +    ++SL K     G+++G
Sbjct:   99 HGLPEFTNAIAKFMEKTRGGKVKFDAKRVVMAGGATGANETLILCLADPGDAFLVPTPYYPGFNRDLRWRSGVQLLPISCKSCNNFKITIEAIEEAYEKGQQANVKIKGLILTNPCNPLGTILDRDTLKKISTFTNEHNIHLVCDEIYAATVFNSPKFVSIAEIINEDNCINKDLVHIVSSLSKDLGFPGFRVG 292          
BLAST of CX298057 vs. ExPASy Swiss-Prot
Match: PATR_COREF (Putative phenylalanine aminotransferase OS=Corynebacterium efficiens GN=pat PE=3 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 3.539e-11
Identity = 56/206 (27.18%), Postives = 86/206 (41.75%), Query Frame = 2
Query:   17 AAIQAIRD---GKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPEFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHL 625
            AA+ AI +   G N+Y    G  E    +A        LE+ PE ++TV  G +      +      GDEVI     +++Y     +AGA    I L P      +E +   I+  TR I +  P+NP+G  FT E+        +  DV+V  DE Y +     D          Y   + + +  K + L G ++G+A   P L
Sbjct:   36 AAVSAITEAATGANRYP-DMGAVELRGVLADH------LELTPE-QITVGCGSSALCQQLVQATCAAGDEVIFPWRSFEAYPIFARVAGATAVPIPLLPDTQGHDLEGMLDAITDRTRLIFLCNPNNPSGTTFTEEQFEAFMQR-VPADVVVGLDEAYFEFNRAEDSPVSTEAVQRYPNVIGLRTFSKAYGLAGVRVGYAFGNPEL 232          
BLAST of CX298057 vs. ExPASy Swiss-Prot
Match: HIS8_SULTO (Histidinol-phosphate aminotransferase OS=Sulfolobus tokodaii GN=hisC PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.539e-11
Identity = 44/163 (26.99%), Postives = 80/163 (49.08%), Query Frame = 2
Query:  128 VDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPE--FAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAI 610
            V+P K +  T G   A+ A    LI  GD+V++  P Y  Y+   S+ G K+  + L   +  + +  E+     +KN R ++++ P+NPTG    + E + + +L    +  +  DE Y    +E    ++A L   Y   + + +L K FSL  +++G+ I
Sbjct:    7 VEP-KNIYPTPGGDGALRAVFYNLIQTGDKVVINNPSYSMYKVYASVRGLKLTRVNLIENDNWWKMNFEKFLDE-AKNARLVIIDDPNNPTGSPMLKAEEDKVRALAESINGFILIDEAY----YEFSGYTVAKLINKYPNLLIVRTLSKAFSLASYRVGYLI 163          
BLAST of CX298057 vs. ExPASy Swiss-Prot
Match: HIS8_METST (Histidinol-phosphate aminotransferase OS=Methanosphaera stadtmanae (strain DSM 3091) GN=hisC PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.539e-11
Identity = 43/150 (28.67%), Postives = 71/150 (47.33%), Query Frame = 2
Query:  170 EAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPEFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPP 619
            E +A T+   I+ GDE I+  P Y  YE T   + AK    T    E  + ++ + + I+  T+ I + TP+NPTG +  +E+   I  +    D LV  DE Y    +E   ++  +L   Y     + +  K   L G +IG+ ++ P
Sbjct:   99 EVLAKTV---IDEGDEFIVHQPTYTYYEYTFKQSNAKAVYATWNIEENKLDVDSVLNNITDKTKVIFLCTPNNPTGGLIPQED---IVRIIEATDALVVIDEAY----WEFSEVNNVNLLKKYNNIFIIRTFSKVMGLAGLRIGYGLSNP 238          
BLAST of CX298057 vs. ExPASy Swiss-Prot
Match: HIS8_META3 (Histidinol-phosphate aminotransferase OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=hisC PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.036e-11
Identity = 41/161 (25.47%), Postives = 77/161 (47.83%), Query Frame = 2
Query:  134 PEKEVTVTS-GCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITL-RPPEFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAI 610
            P++ + V   G  E I   +  LI+  DEVI+  P +  Y  +  + GA IK     +  +F + ++ + + I+  T+ I + TP+NPTG +  ++++  I +     D LV  D  Y  + +  +   +      Y+  + + +  K F L G +IG+ I
Sbjct:   86 PKENIVVGGDGADEIIDTMMRILIDKDDEVIIPIPTFTQYRISAKIYGANIKYAKFDKEKDFKLDVDSVLNNITDKTKIIFLCTPNNPTGNIIDKKDIEKIIN---STDALVMIDHAY--IEYSKEEYDLTEFALKYDNVLILRTFSKVFGLAGQRIGYGI 241          
BLAST of CX298057 vs. ExPASy Swiss-Prot
Match: HIS8_CHLP8 (Histidinol-phosphate aminotransferase OS=Chlorobaculum parvum (strain NCIB 8327) GN=hisC PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.036e-11
Identity = 39/165 (23.64%), Postives = 80/165 (48.48%), Query Frame = 2
Query:  134 PEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPEFAIPIEELKSTISKN-TRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHL 625
            P + V +++G  E +    +  +  G +V++  P +  Y+    +   +I  + L P + +  ++ + +   +     I+++TP+NP GK  + +E+  I S C   D +V +DE Y + +      S+  L   Y   + + ++ K  +L G +IG+AI  P L
Sbjct:   79 PAESVIMSNGSNEMLYTIFMACVGAGRKVLIPEPSFSLYDKLAVLLQGEIVSVPLNP-DLSFDVDAIIAAAEREKVDFIVLSTPNNPAGKSMSHDEVERIVSTC---DAIVLADEAYIEFS---QQESVVDLIDRYPNLIVLRTMSKALALAGMRIGFAITNPEL 236          
BLAST of CX298057 vs. ExPASy Swiss-Prot
Match: ATTY_TRYCR (Tyrosine aminotransferase OS=Trypanosoma cruzi PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 6.036e-11
Identity = 51/203 (25.12%), Postives = 90/203 (44.33%), Query Frame = 2
Query:   47 NQYARGHGVPEFNSAIASRFK-----KDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPP-EFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFE-MDHISIASLPGMYERTVTMNSLG---KTFSLTGWKIGWAI-APPH 622
            N Y    G PE   A+A+ ++     K+       +  V + SG +  I   I  + + GD  ++  P +  YE      G  +     RP  ++   ++E++      T+ +++  P NP G  F+R+ +  I  L  E  + +FSDE+Y  + F+  D  +  +    +E TV    LG   K   + GW++GW +   PH
Sbjct:   69 NGYFPTVGSPEAREAVATWWRNSFVHKEELKSTIVKDNVVLCSGGSHGILMAITAICDAGDYALVPQPGFPHYETVCKAYGIGMHFYNCRPENDWEADLDEIRRLKDDKTKLLIVTNPSNPCGSNFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSVADFETTVPRVILGGTAKNLVVPGWRLGWLLYVDPH 271          
BLAST of CX298057 vs. ExPASy Swiss-Prot
Match: PATR_PROAC (Putative phenylalanine aminotransferase OS=Propionibacterium acnes GN=pat PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.883e-11
Identity = 55/200 (27.50%), Postives = 94/200 (47.00%), Query Frame = 2
Query:   77 EFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPEFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGM--YERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLTFAT 670
            E  S IA  F    G++V    +V V +G TE  +  +  L   GDE+I     +++Y     +AGA    + L   +    ++ +   I+  TR I + TP+NPTG +   +E+    +   EN V+V  DE Y    F  D  ++  L  +  +   V + +  K + L G +IG+AI+ P ++  +R+  +  T  T
Sbjct:   62 EVRSTIAGHF----GVDVS---QVAVGAGSTEVASQLMHALAGAGDEIIFPWRSFEAYPILTKVAGATPIPVPLTV-DLRHDLDAMADAITDRTRVIFLCTPNNPTGTVLHTDEVVEFLARVPEN-VVVVMDEAY--CHFNRDDAAVDGLTLLEDHPNVVVLRTFSKAYGLAGLRIGFAISTPEISDDLRRVATPFTVTT 250          
BLAST of CX298057 vs. ExPASy Swiss-Prot
Match: HIS8_STAS1 (Histidinol-phosphate aminotransferase OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=hisC PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.883e-11
Identity = 51/198 (25.76%), Postives = 88/198 (44.44%), Query Frame = 2
Query:   20 AIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPEFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASLPGMYERTVTMNSLGKTFSLTGWKIGWAIA 613
            AIQA  D + QY    G P    AI+        L +DP + +   +G  E I      ++ PGD+++     +  Y     +  A +  + L+  EF   ++ + S I  +T+ + +  P+NPTG+ FT + L       + + + V  DE Y + A   D     +L   +E    + +  K + L G +IG+ IA
Sbjct:   49 AIQAHLD-ELQYYPETGSPLIKEAISKH------LNIDPAR-ILFGAGLDEVILMISRAVLTPGDKIVTSEMTFGQYYHNAIVESANVVQVPLQNGEF--DLDGILSEIDNDTKLVWLCNPNNPTGRYFTHDALRNFLER-VPSHIPVIVDEAYVEFATAKDFPDTLALQQEFENAFLLRTFSKAYGLAGMRIGYVIA 235          
The following BLAST results are available for this feature:
BLAST of CX298057 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 102
Match NameE-valueIdentityDescription
1A15_ARATH2.075e-1127.271-aminocyclopropane-1-carboxylate synthase 5 OS=Ar... [more]
1A14_SOLLC2.709e-1127.321-aminocyclopropane-1-carboxylate synthase 4 OS=So... [more]
PATR_COREF3.539e-1127.18Putative phenylalanine aminotransferase OS=Coryneb... [more]
HIS8_SULTO3.539e-1126.99Histidinol-phosphate aminotransferase OS=Sulfolobu... [more]
HIS8_METST3.539e-1128.67Histidinol-phosphate aminotransferase OS=Methanosp... [more]
HIS8_META36.036e-1125.47Histidinol-phosphate aminotransferase OS=Methanoco... [more]
HIS8_CHLP86.036e-1123.64Histidinol-phosphate aminotransferase OS=Chlorobac... [more]
ATTY_TRYCR6.036e-1125.12Tyrosine aminotransferase OS=Trypanosoma cruzi PE=... [more]
PATR_PROAC7.883e-1127.50Putative phenylalanine aminotransferase OS=Propion... [more]
HIS8_STAS17.883e-1125.76Histidinol-phosphate aminotransferase OS=Staphyloc... [more]

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Properties
Property NameValue
Genbank descriptionC06008B06SK RindPdig24 Citrus clementina cDNA clone C06008B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298057 ID=CX298057; Name=CX298057; organism=Citrus clementina; type=EST; length=677bp
AGGATTTTGTTAAGATGCAGCGATTCAAGCCATAAGGGATGGGAAGAATC
AATATGCTCGTGGACATGGGGTTCCAGAGTTCAACTCTGCCATTGCTTCC
CGGTTTAAGAAAGATTCTGGGCTCGAGGTTGACCCTGAAAAGGAAGTTAC
TGTTACCTCTGGGTGCACCGAAGCCATTGCTGCAACCATCTTAGGTTTGA
TTAATCCTGGAGATGAGGTGATCCTTTTTGCACCTTTCTATGATTCCTAT
GAAGCTACTCTCTCCATGGCTGGTGCTAAAATTAAATGCATCACATTGCG
CCCTCCAGAATTTGCCATCCCCATTGAAGAGCTCAAGTCTACAATCTCAA
AAAATACTCGTGCAATTCTTATGAACACTCCACATAACCCCACTGGAAAG
ATGTTCACTAGGGAGGAACTTAATGTTATTGCATCTCTTTGCATTGAGAA
TGATGTGTTGGTTTTTAGTGATGAGGTCTATGATAAGTTGGCTTTTGAAA
TGGATCACATTTCCATAGCCTCTCTTCCTGGAATGTATGAGCGTACTGTA
ACCATGAATTCCTTAGGGAAGACATTCTCTTTAACAGGGTGGAAGATCGG
GTGGGCAATAGCTCCACCGCACCTTACATGGGGGGTGCGGCAGGCACACT
CTTTTCTCACGTTTGCCACATCCACTC
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