CX298061

Overview
NameCX298061
Unique NameCX298061
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length730
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX298061 vs. ExPASy Swiss-Prot
Match: HTPG_RHOPA (Chaperone protein htpG OS=Rhodopseudomonas palustris GN=htpG PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.301e-11
Identity = 60/203 (29.56%), Postives = 95/203 (46.80%), Query Frame = 2
Query:    8 FITGANKEQLEKSPFLERLKKKNYEVIFFTDPVDEYLMQYLMDYEDKKFQNVSKEGLKLG----------KDTKDKELKESFKELTKWWKGALASENVDDVKVSNRLDNTPCVVVTSKYGWSANMERIMQSQTLSDASKQAYMRGKRVLEINPRHPIIKELRERVVKDPEDAGVQQTAQLIYQTALMESGFSLNDPKDFASRI 586
            ++ G + E+L+ +P LE    +  EV+  TDPVD +     +D+  K  +++S+  +             KD KD E K     +    K AL  E V DVK S RL ++   +V    G    +E++     L+ A+K A    K +LEIN +HP++  L +      E A +   A L+ + A +  G    DP  FASR+
Sbjct:  426 YLVGDSLERLKSNPKLESATARGIEVLLLTDPVDAFWTSGQLDFGGKPLKSLSQGDVNFDLIPKLEQDQDKDNKD-EAKVDEATVIAVIKDALG-ERVSDVKASQRLTSSASCLVAGGMGPDRELEKL-----LARANKGA--GSKPILEINLQHPLVAALGDTKTDKAEAADL---AFLLLEQAQILDGELPEDPAAFASRL 616          
BLAST of CX298061 vs. ExPASy Swiss-Prot
Match: HTPG_CAMHC (Chaperone protein htpG OS=Campylobacter hominis (strain ATCC BAA-381 / LMG 19568 / NCTC 13146 / CH001A) GN=htpG PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.923e-11
Identity = 52/204 (25.49%), Postives = 91/204 (44.61%), Query Frame = 2
Query:    8 FITGANKEQLEKSPFLERLKKKNYEVIFFTDPVDEYLMQYLMDYEDKKFQNVSKEGLKLGK---DTKDKELKESFKELTKWWKGALASENVDDVKVSNRLDNTPCVVVTSKYGWSANMERIMQSQTLSDASKQAYMRGKRVLEINPRHPIIKELRERVVKDPEDAGVQQTAQLIYQTALMESGFSLNDPKDFASRIYSTVKSSL 610
            +I+G   E L+ SP LE    KN EV+   D +D  +M  + +++    ++V        K     +D E+ E  KE  K        + V DVK+S RL N   V+V  K   +  M+ I +     +  +        +LEIN  H IIK+L   +    E   + + + +I+  A +  G +++D  +FA  +   +  ++
Sbjct:  428 YISGGKAETLKNSPLLEEFNAKNIEVLICDDEIDTIIMPMIGEFDKTPIKSVMDADFSDDKGEISAQDLEIAEKIKENLK--------DKVKDVKISKRLKNALGVLVFDKNDPNYAMQAIYKQMGQENLPEVL-----PILEINKDHEIIKKL---IANQSE---IAKISNIIFDLAKLSEGQNIDDASEFAKNVSEIIAKAI 612          
BLAST of CX298061 vs. ExPASy Swiss-Prot
Match: HTPG_RHIME (Chaperone protein htpG OS=Rhizobium meliloti GN=htpG PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.042e-11
Identity = 52/199 (26.13%), Postives = 92/199 (46.23%), Query Frame = 2
Query:    8 FITGANKEQLEKSPFLERLKKKNYEVIFFTDPVDEYLMQYLMDYEDKKFQNVSKEGLKLGKDTKDKELKESFKE----LTKWWKGA--LASENVDDVKVSNRLDNTPCVVVTSKYGWSANMERIMQSQTLSDASKQAYMRGKRVLEINPRHPIIKELRERVVKDPEDAGVQQTAQLIYQTALMESGFSLNDPKDFASRI 586
            ++TG N  QL+ SP LE  + +  EV+  T PVD + +    D++ K F+++++    L    K+ +   +  E    +T +   A     E V DV+ S+RL  +   +V  + G    +++++Q     + +       K VLEINP H +I  L        + A  +   +L+   A +  G    DP+ FA R+
Sbjct:  429 YLTGDNLAQLKASPQLEGFRARGIEVLLLTCPVDSFWVTTAPDFDGKPFKSITQGAADLAGIAKNDDAAAASPEAGAAVTDFVSFARETLGEAVSDVRTSDRLTESAVCLVAPEQGPDRQLQKMLQDAGRIEGAP------KPVLEINPGHQLIAAL--ATCPSEDKAFREDAVKLLLDQARVLDGDRPEDPRAFAERL 619          
The following BLAST results are available for this feature:
BLAST of CX298061 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 363
Match NameE-valueIdentityDescription
HTPG_RHOPA5.301e-1129.56Chaperone protein htpG OS=Rhodopseudomonas palustr... [more]
HTPG_CAMHC6.923e-1125.49Chaperone protein htpG OS=Campylobacter hominis (s... [more]
HTPG_RHIME9.042e-1126.13Chaperone protein htpG OS=Rhizobium meliloti GN=ht... [more]

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Properties
Property NameValue
Genbank descriptionC06008B10SK RindPdig24 Citrus clementina cDNA clone C06008B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298061 ID=CX298061; Name=CX298061; organism=Citrus clementina; type=EST; length=730bp
GAGGCTTTTCATTACAGGCGCCAACAAGGAACAGTTGGAAAAGTCTCCAT
TCCTGGAGAGGCTTAAGAAGAAGAACTATGAGGTGATTTTCTTCACTGAT
CCAGTTGATGAATACCTGATGCAATACCTGATGGATTATGAAGACAAAAA
GTTCCAAAATGTATCCAAAGAGGGTCTTAAACTTGGTAAAGACACTAAAG
ATAAGGAACTTAAGGAGTCATTCAAGGAGCTCACGAAATGGTGGAAGGGT
GCTCTTGCCAGCGAGAACGTGGATGATGTGAAAGTAAGCAACCGCTTGGA
TAACACCCCTTGCGTAGTTGTGACATCAAAGTATGGTTGGAGTGCGAATA
TGGAGAGGATCATGCAGTCTCAGACTCTCTCAGATGCTAGCAAGCAAGCA
TATATGCGGGGCAAGAGGGTGCTTGAAATCAATCCAAGGCATCCAATCAT
CAAAGAGCTCCGGGAGAGAGTCGTCAAGGACCCTGAGGATGCGGGTGTCC
AGCAAACAGCCCAACTCATTTACCAGACGGCACTCATGGAGAGTGGCTTT
TCGCTCAATGATCCCAAGGATTTTGCCTCCCGAATTTACAGCACGGTGAA
ATCTAGCCTTAACATTAGCCCTGATGCAGCTGTTGAGGAGGAAGATGATG
TAGAAGAGACTGATGCTGACACTGAAATGAAAGAATCTTCGGCTGCCAAG
AGGACGTGGATACAGAGTATTCTGGCAGGA
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