CX298065

Overview
NameCX298065
Unique NameCX298065
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length503
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX298065 vs. ExPASy Swiss-Prot
Match: RL5_OIKDI (60S ribosomal protein L5 OS=Oikopleura dioica GN=RPL5 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 3.835e-12
Identity = 32/71 (45.07%), Postives = 49/71 (69.01%), Query Frame = 2
Query:    5 EDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADPNQKKSEKKPPAEHKRYNLKKLTYEERKARLVE 217
            E+  E Y+  F  +IK GI ++N+EE+YKK HAAIRADP+ K   +K   + KR+N  K++Y +R+AR+ +
Sbjct:  221 EENEEAYKRQFSRFIKNGINSENIEEMYKKAHAAIRADPSPKAKVEK-TVDKKRWNRAKISYAQRRARVAQ 290          
BLAST of CX298065 vs. ExPASy Swiss-Prot
Match: RL5_TOXCI (60S ribosomal protein L5 OS=Toxoptera citricida GN=RpL5 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 8.543e-12
Identity = 35/72 (48.61%), Postives = 48/72 (66.67%), Query Frame = 2
Query:    5 EDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADPNQKKSEKKPPA-EHKRYNLKKLTYEERKARLVE 217
            E++ + +   F +YIK GI AD+LE +YKK H  IR+DP + +  KK  + E KR+N KKLT  ERK R+VE
Sbjct:  213 EEDEDAFNRQFSQYIKLGIVADDLENMYKKAHENIRSDPKRDRKPKKDVSKEPKRWNAKKLTNAERKQRVVE 284          
BLAST of CX298065 vs. ExPASy Swiss-Prot
Match: RL5B_XENLA (60S ribosomal protein L5-B OS=Xenopus laevis GN=rpl5-B PE=2 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 1.903e-11
Identity = 31/73 (42.47%), Postives = 49/73 (67.12%), Query Frame = 2
Query:    2 MEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADPNQKKSEKKPPAEHKRYNLKKLTYEERKARLVER 220
            ME++ + Y+  F +YIK G+ AD LE++YKK HA IR +P  +K  KK   + KR+N  KL+ E++K R+ ++
Sbjct:  212 MEEDEDAYKKQFSQYIKNGVAADQLEDIYKKAHAGIRENPVHEKKPKK-EVKKKRWNRAKLSLEQKKDRVAQK 283          
BLAST of CX298065 vs. ExPASy Swiss-Prot
Match: RL5A_XENLA (60S ribosomal protein L5-A OS=Xenopus laevis GN=rpl5-A PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 2.486e-11
Identity = 31/73 (42.47%), Postives = 49/73 (67.12%), Query Frame = 2
Query:    2 MEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADPNQKKSEKKPPAEHKRYNLKKLTYEERKARLVER 220
            ME++ + Y+  F +YIK G+ AD +E+LYKK HA IR +P  +K  KK   + KR+N  KL+ E++K R+ ++
Sbjct:  212 MEEDEDAYKKQFSQYIKNGVTADQVEDLYKKAHAGIRENPVHEKKPKK-EVKKKRWNRAKLSLEQKKDRVAQK 283          
BLAST of CX298065 vs. ExPASy Swiss-Prot
Match: RL5_NEUCR (60S ribosomal protein L5 OS=Neurospora crassa GN=rpl-5 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 5.537e-11
Identity = 36/83 (43.37%), Postives = 50/83 (60.24%), Query Frame = 2
Query:    5 EDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADPNQKKSEKKP-------PAEHKRYNLKKLTYEERKARLVERLKAL 232
            +D+ E+Y+S F  YI+  +EAD LE+LY + HAAIR DP +K   + P        AE  +Y   KLT E+R A + ER+ AL
Sbjct:  216 DDDEERYKSQFNRYIEDDLEADGLEDLYAEAHAAIREDPFKKAESEAPKKTKEEWKAESLKYKKSKLTREQRAAGVQERIAAL 298          
BLAST of CX298065 vs. ExPASy Swiss-Prot
Match: RL5_DUNSA (60S ribosomal protein L5 OS=Dunaliella salina GN=RPL5 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 5.537e-11
Identity = 28/56 (50.00%), Postives = 41/56 (73.21%), Query Frame = 2
Query:    5 EDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADPNQKKSEKKPPAEHKRYN 172
            E+EPEKYQ+HF  Y++  IE D +E++YK+VHA IR +P   K E+  PA+ KR++
Sbjct:  211 EEEPEKYQAHFSSYVENEIEPDGIEDMYKEVHAKIRENPCPPKKERTKPADAKRWS 266          
The following BLAST results are available for this feature:
BLAST of CX298065 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
RL5_OIKDI3.835e-1245.0760S ribosomal protein L5 OS=Oikopleura dioica GN=R... [more]
RL5_TOXCI8.543e-1248.6160S ribosomal protein L5 OS=Toxoptera citricida GN... [more]
RL5B_XENLA1.903e-1142.4760S ribosomal protein L5-B OS=Xenopus laevis GN=rp... [more]
RL5A_XENLA2.486e-1142.4760S ribosomal protein L5-A OS=Xenopus laevis GN=rp... [more]
RL5_NEUCR5.537e-1143.3760S ribosomal protein L5 OS=Neurospora crassa GN=r... [more]
RL5_DUNSA5.537e-1150.0060S ribosomal protein L5 OS=Dunaliella salina GN=R... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC06008C02SK RindPdig24 Citrus clementina cDNA clone C06008C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298065 ID=CX298065; Name=CX298065; organism=Citrus clementina; type=EST; length=503bp
GATGGAAGATGAGCCAGAGAAGTACCAGTCTCACTTTTGTGAATACATCA
AGAGAGGTATTGAGGCTGATAACCTTGAAGAGTTGTACAAGAAGGTACAT
GCTGCCATCCGTGCAGACCCTAACCAGAAGAAATCTGAGAAGAAGCCTCC
AGCAGAGCACAAGAGGTACAACCTGAAGAAACTGACGTACGAGGAAAGGA
AAGCCAGGTTAGTTGAAAGGTTGAAAGCACTCAATGCTGCTGAAGACGAT
GAAGCCGATGAGTGAATGCGATACTAGGAAGTTTTTGTTTCTTAGTTCAA
TAGGTTATTTTCAGAGATTACTAAAATTAAAGAACCTGGCTTGTTTGATA
GGTTGAGAACAGTGTTGTTTCTATGAGCTTTCAAATGCTGATGAGACCTG
GTTGTTTGCTGAAATTCCAGTATTTCAATCTTTTGTAGTCAATGTGCTGA
AATTAGACAATGCAACAAATATTTTTACTCTGAAAAAAAAAAAAAAAAAA
AAA
back to top