CX298264

Overview
NameCX298264
Unique NameCX298264
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length409
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX298264 vs. ExPASy Swiss-Prot
Match: R10A3_ARATH (60S ribosomal protein L10a-3 OS=Arabidopsis thaliana GN=RPL10AC PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 7.241e-30
Identity = 57/95 (60.00%), Postives = 79/95 (83.16%), Query Frame = 1
Query:    7 LLGPGLSKAGKFPTPVSHAEDMAAKVTDVKSTIKFQLKKVLCLGVAIGNVEMEKEALVANLMLAINYLVSLLKKGWQNVGSLVIKASMSPPHRVY 291
            LLGPGL+KAGKFPT VSH E + +KV + K+T+KFQLKKVLC+GVA+GN+ ME++ +  N+ +++N+LVSLLKK WQNV  L +K++M PP+RV+
Sbjct:  123 LLGPGLNKAGKFPTLVSHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPPNRVF 217          
BLAST of CX298264 vs. ExPASy Swiss-Prot
Match: R10A1_ARATH (60S ribosomal protein L10a-1 OS=Arabidopsis thaliana GN=RPL10AA PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 1.235e-29
Identity = 56/95 (58.95%), Postives = 78/95 (82.11%), Query Frame = 1
Query:    7 LLGPGLSKAGKFPTPVSHAEDMAAKVTDVKSTIKFQLKKVLCLGVAIGNVEMEKEALVANLMLAINYLVSLLKKGWQNVGSLVIKASMSPPHRVY 291
            LLGPGL+KAGKFPT VSH E + +KV + K+T+KFQLKKVLC+GVA+GN+ ME++ +  N+ +++N+LVSLLKK WQNV  L +K++M PP R++
Sbjct:  122 LLGPGLNKAGKFPTLVSHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPPQRIF 216          
BLAST of CX298264 vs. ExPASy Swiss-Prot
Match: R10AB_DROME (60S ribosomal protein L10a-2 OS=Drosophila melanogaster GN=RpL10Ab PE=1 SV=2)

HSP 1 Score: 127.872 bits (320), Expect = 1.613e-29
Identity = 61/95 (64.21%), Postives = 76/95 (80.00%), Query Frame = 1
Query:    7 LLGPGLSKAGKFPTPVSHAEDMAAKVTDVKSTIKFQLKKVLCLGVAIGNVEMEKEALVANLMLAINYLVSLLKKGWQNVGSLVIKASMSPPHRVY 291
            LLGPGL+KAGKFP  +SH E M  K+ +VKSTIKFQ+KKVLCL VA+G+V M+ + L  N+ L+IN+LVSLLKK WQNV SL +K+SM PP R+Y
Sbjct:  123 LLGPGLNKAGKFPALLSHQESMIGKIEEVKSTIKFQMKKVLCLSVAVGHVGMKSDELAQNVNLSINFLVSLLKKNWQNVRSLHVKSSMGPPQRLY 217          
BLAST of CX298264 vs. ExPASy Swiss-Prot
Match: RL10A_RAT (60S ribosomal protein L10a OS=Rattus norvegicus GN=Rpl10a PE=1 SV=2)

HSP 1 Score: 126.716 bits (317), Expect = 3.594e-29
Identity = 60/95 (63.16%), Postives = 79/95 (83.16%), Query Frame = 1
Query:    7 LLGPGLSKAGKFPTPVSHAEDMAAKVTDVKSTIKFQLKKVLCLGVAIGNVEMEKEALVANLMLAINYLVSLLKKGWQNVGSLVIKASMSPPHRVY 291
            +LGPGL+KAGKFP+ ++H E+M AKV +VKSTIKFQ+KKVLCL VA+G+V+M  + LV N+ LA+N+LVSLLKK WQNV +L IK++M  P R+Y
Sbjct:  123 ILGPGLNKAGKFPSLLTHNENMVAKVDEVKSTIKFQMKKVLCLAVAVGHVKMTDDELVYNIHLAVNFLVSLLKKNWQNVRALYIKSTMGKPQRLY 217          
BLAST of CX298264 vs. ExPASy Swiss-Prot
Match: RL10A_MOUSE (60S ribosomal protein L10a OS=Mus musculus GN=Rpl10a PE=1 SV=3)

HSP 1 Score: 126.716 bits (317), Expect = 3.594e-29
Identity = 60/95 (63.16%), Postives = 79/95 (83.16%), Query Frame = 1
Query:    7 LLGPGLSKAGKFPTPVSHAEDMAAKVTDVKSTIKFQLKKVLCLGVAIGNVEMEKEALVANLMLAINYLVSLLKKGWQNVGSLVIKASMSPPHRVY 291
            +LGPGL+KAGKFP+ ++H E+M AKV +VKSTIKFQ+KKVLCL VA+G+V+M  + LV N+ LA+N+LVSLLKK WQNV +L IK++M  P R+Y
Sbjct:  123 ILGPGLNKAGKFPSLLTHNENMVAKVDEVKSTIKFQMKKVLCLAVAVGHVKMTDDELVYNIHLAVNFLVSLLKKNWQNVRALYIKSTMGKPQRLY 217          
BLAST of CX298264 vs. ExPASy Swiss-Prot
Match: RL10A_HUMAN (60S ribosomal protein L10a OS=Homo sapiens GN=RPL10A PE=1 SV=2)

HSP 1 Score: 126.716 bits (317), Expect = 3.594e-29
Identity = 60/95 (63.16%), Postives = 79/95 (83.16%), Query Frame = 1
Query:    7 LLGPGLSKAGKFPTPVSHAEDMAAKVTDVKSTIKFQLKKVLCLGVAIGNVEMEKEALVANLMLAINYLVSLLKKGWQNVGSLVIKASMSPPHRVY 291
            +LGPGL+KAGKFP+ ++H E+M AKV +VKSTIKFQ+KKVLCL VA+G+V+M  + LV N+ LA+N+LVSLLKK WQNV +L IK++M  P R+Y
Sbjct:  123 ILGPGLNKAGKFPSLLTHNENMVAKVDEVKSTIKFQMKKVLCLAVAVGHVKMTDDELVYNIHLAVNFLVSLLKKNWQNVRALYIKSTMGKPQRLY 217          
BLAST of CX298264 vs. ExPASy Swiss-Prot
Match: RL10A_BOVIN (60S ribosomal protein L10a OS=Bos taurus GN=RPL10A PE=2 SV=3)

HSP 1 Score: 126.716 bits (317), Expect = 3.594e-29
Identity = 60/95 (63.16%), Postives = 79/95 (83.16%), Query Frame = 1
Query:    7 LLGPGLSKAGKFPTPVSHAEDMAAKVTDVKSTIKFQLKKVLCLGVAIGNVEMEKEALVANLMLAINYLVSLLKKGWQNVGSLVIKASMSPPHRVY 291
            +LGPGL+KAGKFP+ ++H E+M AKV +VKSTIKFQ+KKVLCL VA+G+V+M  + LV N+ LA+N+LVSLLKK WQNV +L IK++M  P R+Y
Sbjct:  123 ILGPGLNKAGKFPSLLTHNENMVAKVDEVKSTIKFQMKKVLCLAVAVGHVKMTDDELVYNIHLAVNFLVSLLKKNWQNVRALYIKSTMGKPQRLY 217          
BLAST of CX298264 vs. ExPASy Swiss-Prot
Match: RL10A_DANRE (60S ribosomal protein L10a OS=Danio rerio GN=rpl10a PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 4.693e-29
Identity = 59/95 (62.11%), Postives = 79/95 (83.16%), Query Frame = 1
Query:    7 LLGPGLSKAGKFPTPVSHAEDMAAKVTDVKSTIKFQLKKVLCLGVAIGNVEMEKEALVANLMLAINYLVSLLKKGWQNVGSLVIKASMSPPHRVY 291
            +LGPGL+KAGKFP+ ++H E++  KV +VKSTIKFQ+KKVLCL VA+G+V+M +E LV N+ LA+N+LVSLLKK WQNV +L IK++M  P R+Y
Sbjct:  122 ILGPGLNKAGKFPSLLTHNENLGTKVDEVKSTIKFQMKKVLCLAVAVGHVKMSEEELVYNIHLAVNFLVSLLKKNWQNVRALYIKSTMGKPQRLY 216          
BLAST of CX298264 vs. ExPASy Swiss-Prot
Match: RL10A_XENLA (60S ribosomal protein L10a OS=Xenopus laevis GN=rpl10a PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 8.006e-29
Identity = 59/95 (62.11%), Postives = 80/95 (84.21%), Query Frame = 1
Query:    7 LLGPGLSKAGKFPTPVSHAEDMAAKVTDVKSTIKFQLKKVLCLGVAIGNVEMEKEALVANLMLAINYLVSLLKKGWQNVGSLVIKASMSPPHRVY 291
            +LGPGL+KAGKFP+ ++H E++ AKV +VKSTIKFQ+KKVLCL VA+G+V++ +E LV N+ L+IN+LVSLLKK WQNV +L IK++M  P R+Y
Sbjct:  123 ILGPGLNKAGKFPSLLTHNENLVAKVDEVKSTIKFQMKKVLCLAVAVGHVKLTEEELVYNIHLSINFLVSLLKKNWQNVRALYIKSTMGKPQRLY 217          
BLAST of CX298264 vs. ExPASy Swiss-Prot
Match: RL10A_ICTPU (60S ribosomal protein L10a OS=Ictalurus punctatus GN=rpl10a PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 1.046e-28
Identity = 59/95 (62.11%), Postives = 78/95 (82.11%), Query Frame = 1
Query:    7 LLGPGLSKAGKFPTPVSHAEDMAAKVTDVKSTIKFQLKKVLCLGVAIGNVEMEKEALVANLMLAINYLVSLLKKGWQNVGSLVIKASMSPPHRVY 291
            +LGPGL+KAGKFP+ ++H E++  KV +VKSTIKFQ+KKVLCL VA+G+V M ++ LV N+ LA+N+LVSLLKK WQNV +L IK+SM  P R+Y
Sbjct:  122 ILGPGLNKAGKFPSLLTHNENLNTKVDEVKSTIKFQMKKVLCLAVAVGHVRMSEDELVYNIHLAVNFLVSLLKKNWQNVRALYIKSSMGKPQRLY 216          
The following BLAST results are available for this feature:
BLAST of CX298264 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
R10A3_ARATH7.241e-3060.0060S ribosomal protein L10a-3 OS=Arabidopsis thalia... [more]
R10A1_ARATH1.235e-2958.9560S ribosomal protein L10a-1 OS=Arabidopsis thalia... [more]
R10AB_DROME1.613e-2964.2160S ribosomal protein L10a-2 OS=Drosophila melanog... [more]
RL10A_RAT3.594e-2963.1660S ribosomal protein L10a OS=Rattus norvegicus GN... [more]
RL10A_MOUSE3.594e-2963.1660S ribosomal protein L10a OS=Mus musculus GN=Rpl1... [more]
RL10A_HUMAN3.594e-2963.1660S ribosomal protein L10a OS=Homo sapiens GN=RPL1... [more]
RL10A_BOVIN3.594e-2963.1660S ribosomal protein L10a OS=Bos taurus GN=RPL10A... [more]
RL10A_DANRE4.693e-2962.1160S ribosomal protein L10a OS=Danio rerio GN=rpl10... [more]
RL10A_XENLA8.006e-2962.1160S ribosomal protein L10a OS=Xenopus laevis GN=rp... [more]
RL10A_ICTPU1.046e-2862.1160S ribosomal protein L10a OS=Ictalurus punctatus ... [more]

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Properties
Property NameValue
Genbank descriptionC06010D02SK RindPdig24 Citrus clementina cDNA clone C06010D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298264 ID=CX298264; Name=CX298264; organism=Citrus clementina; type=EST; length=409bp
GAGGGTCTCCTCGGTCCCGGTCTCTCCAAGGCCGGAAAGTTCCCTACCCC
CGTCTCCCACGCTGAGGACATGGCCGCCAAGGTCACCGACGTCAAGTCCA
CCATCAAGTTCCAGCTCAAGAAGGTTCTGTGCCTCGGTGTTGCTATCGGC
AACGTCGAGATGGAGAAGGAGGCTCTTGTTGCCAACCTGATGCTCGCCAT
CAACTACCTCGTCTCCCTCCTCAAGAAGGGCTGGCAGAACGTTGGCAGTC
TTGTCATCAAGGCTTCCATGTCTCCCCCCCACCGTGTCTACTAGATTATC
TGTCGCTTAACTGCGCCGGTGAGATCTATTTTGGGCCTGAGAACTGGGTT
TATGTCACAGTCTCACGACTGAAAAAAAATATGAAGCTCATGAAAAAAAA
AAAAAAAAA
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