CX298264

Overview
NameCX298264
Unique NameCX298264
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length409
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX298264 vs. ExPASy Swiss-Prot
Match: RL10A_CAEEL (60S ribosomal protein L10a OS=Caenorhabditis elegans GN=rpl-10a PE=1 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 6.777e-28
Identity = 56/95 (58.95%), Postives = 78/95 (82.11%), Query Frame = 1
Query:    7 LLGPGLSKAGKFPTPVSHAEDMAAKVTDVKSTIKFQLKKVLCLGVAIGNVEMEKEALVANLMLAINYLVSLLKKGWQNVGSLVIKASMSPPHRVY 291
            +LGPGL+KAGKFP+ V+H E + +K  ++++T+KFQ+KKVLCL VA+G+V + +E LV+N+ L+IN+LVSLLKK WQNV SL IK++M  P RVY
Sbjct:  122 ILGPGLNKAGKFPSVVTHGESLQSKSDEIRATVKFQMKKVLCLSVAVGHVGLTQEELVSNISLSINFLVSLLKKNWQNVRSLNIKSTMGKPQRVY 216          
BLAST of CX298264 vs. ExPASy Swiss-Prot
Match: RL10A_SPOFR (60S ribosomal protein L10a OS=Spodoptera frugiperda GN=RpL10A PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.156e-27
Identity = 58/95 (61.05%), Postives = 76/95 (80.00%), Query Frame = 1
Query:    7 LLGPGLSKAGKFPTPVSHAEDMAAKVTDVKSTIKFQLKKVLCLGVAIGNVEMEKEALVANLMLAINYLVSLLKKGWQNVGSLVIKASMSPPHRVY 291
            LLGPGL+KAGKFP  +SH E M  K+ +VK+TIKFQ+KKVLCL VA+G+V+M  + L  N+ L+IN+LVSLLKK WQNV SL +K++M PP ++Y
Sbjct:  123 LLGPGLNKAGKFPGLLSHQESMTQKIDEVKATIKFQMKKVLCLSVAVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMKSTMGPPPKLY 217          
BLAST of CX298264 vs. ExPASy Swiss-Prot
Match: RL10A_CHLRE (60S ribosomal protein L10a OS=Chlamydomonas reinhardtii GN=RPL10A PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 2.041e-24
Identity = 55/95 (57.89%), Postives = 71/95 (74.74%), Query Frame = 1
Query:    7 LLGPGLSKAGKFPTPVSHAEDMAAKVTDVKSTIKFQLKKVLCLGVAIGNVEMEKEALVANLMLAINYLVSLLKKGWQNVGSLVIKASMSPPHRVY 291
            LLGPGL+KAGKFP P++  +++   V D K +IKFQLKKVLC+GVA+ NV M +  +  N+M AIN+LVSLLKK WQNV  L IK++M  P R+Y
Sbjct:  121 LLGPGLNKAGKFPAPIN--KNLEEMVLDTKCSIKFQLKKVLCMGVAVANVGMTEGEIRTNIMYAINFLVSLLKKNWQNVRCLYIKSTMGKPIRIY 213          
BLAST of CX298264 vs. ExPASy Swiss-Prot
Match: RL10A_TRYBR (60S ribosomal protein L10a OS=Trypanosoma brucei rhodesiense GN=RPL10A PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 3.258e-22
Identity = 47/95 (49.47%), Postives = 70/95 (73.68%), Query Frame = 1
Query:    7 LLGPGLSKAGKFPTPVSHAEDMAAKVTDVKSTIKFQLKKVLCLGVAIGNVEMEKEALVANLMLAINYLVSLLKKGWQNVGSLVIKASMSPPHRVY 291
            L+GP + + GKFPT  +  E +  KV +++ST+KFQLKKVLCLG  +G+V+M ++ +  N+++AIN+LVSLLKK WQN+ S  IK++M    R+Y
Sbjct:  120 LVGPHMHRVGKFPTVCAQNESLPDKVLELQSTVKFQLKKVLCLGTCVGHVDMTEDQVRQNVVMAINFLVSLLKKNWQNLKSAYIKSTMGKSQRIY 214          
The following BLAST results are available for this feature:
BLAST of CX298264 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
RL10A_CAEEL6.777e-2858.9560S ribosomal protein L10a OS=Caenorhabditis elega... [more]
RL10A_SPOFR1.156e-2761.0560S ribosomal protein L10a OS=Spodoptera frugiperd... [more]
RL10A_CHLRE2.041e-2457.8960S ribosomal protein L10a OS=Chlamydomonas reinha... [more]
RL10A_TRYBR3.258e-2249.4760S ribosomal protein L10a OS=Trypanosoma brucei r... [more]

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Properties
Property NameValue
Genbank descriptionC06010D02SK RindPdig24 Citrus clementina cDNA clone C06010D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298264 ID=CX298264; Name=CX298264; organism=Citrus clementina; type=EST; length=409bp
GAGGGTCTCCTCGGTCCCGGTCTCTCCAAGGCCGGAAAGTTCCCTACCCC
CGTCTCCCACGCTGAGGACATGGCCGCCAAGGTCACCGACGTCAAGTCCA
CCATCAAGTTCCAGCTCAAGAAGGTTCTGTGCCTCGGTGTTGCTATCGGC
AACGTCGAGATGGAGAAGGAGGCTCTTGTTGCCAACCTGATGCTCGCCAT
CAACTACCTCGTCTCCCTCCTCAAGAAGGGCTGGCAGAACGTTGGCAGTC
TTGTCATCAAGGCTTCCATGTCTCCCCCCCACCGTGTCTACTAGATTATC
TGTCGCTTAACTGCGCCGGTGAGATCTATTTTGGGCCTGAGAACTGGGTT
TATGTCACAGTCTCACGACTGAAAAAAAATATGAAGCTCATGAAAAAAAA
AAAAAAAAA
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