CX298270

Overview
NameCX298270
Unique NameCX298270
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length705
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX298270 vs. ExPASy Swiss-Prot
Match: FER_SOLAB (Ferredoxin OS=Solanum abutiloides PE=1 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 8.825e-32
Identity = 62/96 (64.58%), Postives = 80/96 (83.33%), Query Frame = 1
Query:  229 AVYKIKLIGPNGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 516
            A YK+KL+ P+G   EFE  +D+YILD AEE G DLPYSCRAG+CS+CAGK+ +GSVDQSDG+FLDD+Q+  G++LTC++YP SD  I++HKEEEL
Sbjct:    1 ATYKVKLVTPDGPV-EFECPDDEYILDRAEEEGHDLPYSCRAGSCSSCAGKIAAGSVDQSDGNFLDDDQIADGFVLTCVAYPQSDVTIETHKEEEL 95          
BLAST of CX298270 vs. ExPASy Swiss-Prot
Match: FER_SYNP4 (Ferredoxin OS=Synechococcus sp. (strain PCC 7418) PE=1 SV=2)

HSP 1 Score: 136.346 bits (342), Expect = 1.505e-31
Identity = 63/98 (64.29%), Postives = 76/98 (77.55%), Query Frame = 1
Query:  226 MAVYKIKLIGPN-GEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 516
            MA YK+ LI    G     E  +D+YILD AEE G+DLPYSCRAGACSTCAGK+  G +DQSD SFLDD+Q+EAGY+LTC++YP SDC I +H+EEEL
Sbjct:    1 MASYKVTLINEEMGLNETIEVPDDEYILDVAEEEGIDLPYSCRAGACSTCAGKIKEGEIDQSDQSFLDDDQIEAGYVLTCVAYPASDCTIITHQEEEL 98          
BLAST of CX298270 vs. ExPASy Swiss-Prot
Match: FER2_CYACA (Ferredoxin OS=Cyanidium caldarium GN=PETF PE=1 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.505e-31
Identity = 65/96 (67.71%), Postives = 77/96 (80.21%), Query Frame = 1
Query:  232 VYKIKLIGPN-GEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 516
            +YKI+L+    G +       DQYILDAAEE GVDLPYSCRAGACSTCAGKLV GSVDQSD SFLD+ Q+  G++LTC++YPTSDCVIQ+H+EE L
Sbjct:    1 MYKIQLVNQKEGVDVTINCPGDQYILDAAEEQGVDLPYSCRAGACSTCAGKLVKGSVDQSDQSFLDEEQINNGFILTCVAYPTSDCVIQTHQEEAL 96          
BLAST of CX298270 vs. ExPASy Swiss-Prot
Match: FER1_SPIOL (Ferredoxin-1, chloroplastic OS=Spinacia oleracea GN=PETF PE=1 SV=2)

HSP 1 Score: 136.346 bits (342), Expect = 1.505e-31
Identity = 72/149 (48.32%), Postives = 96/149 (64.43%), Query Frame = 1
Query:   73 STVTLSAPCMVKAAPRNQLSRNLIKSPSSLGSVKGISKTFGLKC-SPNFQASMAVYKIKLIGPNGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 516
            +T T          P+ Q    +   PS+ G        FGLK  S   + +MA YK+ L+ P G   EF+  +D YILDAAEE G+DLPYSCRAG+CS+CAGKL +GS++Q D SFLDD+Q++ G++LTC +YP SD  I++HKEEEL
Sbjct:    3 ATTTTMMGMATTFVPKPQAPPMMAALPSNTGR-----SLFGLKTGSRGGRMTMAAYKVTLVTPTGNV-EFQCPDDVYILDAAEEEGIDLPYSCRAGSCSSCAGKLKTGSLNQDDQSFLDDDQIDEGWVLTCAAYPVSDVTIETHKEEEL 145          
BLAST of CX298270 vs. ExPASy Swiss-Prot
Match: FER_COLES (Ferredoxin OS=Colocasia esculenta PE=1 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.966e-31
Identity = 61/96 (63.54%), Postives = 79/96 (82.29%), Query Frame = 1
Query:  229 AVYKIKLIGPNGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 516
            A YK+KL+ P+G++ EF+  +D YILD AEE G+DLPYSCRAG+CS+CAGK+  G VDQSDGSFLDD Q+  G++LTC++YP SD  I++HKEEEL
Sbjct:    1 ATYKVKLVTPSGQQ-EFQCPDDVYILDQAEEVGIDLPYSCRAGSCSSCAGKVKVGDVDQSDGSFLDDEQIGEGWVLTCVAYPVSDGTIETHKEEEL 95          
BLAST of CX298270 vs. ExPASy Swiss-Prot
Match: FER5_MAIZE (Ferredoxin-5, chloroplastic OS=Zea mays GN=FDX5 PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.966e-31
Identity = 68/130 (52.31%), Postives = 92/130 (70.77%), Query Frame = 1
Query:  160 LGSVKGISKTFGLKCSPNFQASM-----------AVYKIKLIGPNGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 516
            L S +  + +F L+ +P    +M           A Y +KLI P GE  E +  +D YILD AEE G+DLPYSCRAG+CS+CAGK+VSGS+DQSD SFLDD+Q+  G++LTC++YPTSD VI++HKE++L
Sbjct:    5 LSSPRAPAFSFSLRAAPATTVAMTRGASSRLRAQATYNVKLITPEGEV-ELQVPDDVYILDYAEEEGIDLPYSCRAGSCSSCAGKVVSGSLDQSDQSFLDDSQVADGWVLTCVAYPTSDVVIETHKEDDL 133          
BLAST of CX298270 vs. ExPASy Swiss-Prot
Match: FER1_SYNP6 (Ferredoxin-1 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=petF1 PE=1 SV=2)

HSP 1 Score: 135.961 bits (341), Expect = 1.966e-31
Identity = 63/98 (64.29%), Postives = 79/98 (80.61%), Query Frame = 1
Query:  226 MAVYKIKLIGP-NGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 516
            MA YK+ L+    G     +  +D YILDAAEE G+DLPYSCRAGACSTCAGK+VSG+VDQSD SFLDD+Q+ AG++LTC++YPTSD  I++HKEE+L
Sbjct:    1 MATYKVTLVNAAEGLNTTIDVADDTYILDAAEEQGIDLPYSCRAGACSTCAGKVVSGTVDQSDQSFLDDDQIAAGFVLTCVAYPTSDVTIETHKEEDL 98          
BLAST of CX298270 vs. ExPASy Swiss-Prot
Match: FER1_SYNE7 (Ferredoxin-1 OS=Synechococcus elongatus (strain PCC 7942) GN=petF PE=3 SV=2)

HSP 1 Score: 135.961 bits (341), Expect = 1.966e-31
Identity = 63/98 (64.29%), Postives = 79/98 (80.61%), Query Frame = 1
Query:  226 MAVYKIKLIGP-NGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 516
            MA YK+ L+    G     +  +D YILDAAEE G+DLPYSCRAGACSTCAGK+VSG+VDQSD SFLDD+Q+ AG++LTC++YPTSD  I++HKEE+L
Sbjct:    1 MATYKVTLVNAAEGLNTTIDVADDTYILDAAEEQGIDLPYSCRAGACSTCAGKVVSGTVDQSDQSFLDDDQIAAGFVLTCVAYPTSDVTIETHKEEDL 98          
BLAST of CX298270 vs. ExPASy Swiss-Prot
Match: FER_CAPAN (Ferredoxin, chloroplastic OS=Capsicum annuum GN=AP1 PE=1 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.568e-31
Identity = 65/110 (59.09%), Postives = 87/110 (79.09%), Query Frame = 1
Query:  190 FGLKCSPNFQAS-MAVYKIKLIGPNGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 516
            FGLK +   + + MA YK+KLI P+G   EF+  ++ YILD AEEAG DLPYSCRAG+CS+CAGK+  G+VDQ+DG+FLDD+Q+E G++LTC++YP SD  I++HKE EL
Sbjct:   34 FGLKSANGGKVTCMASYKVKLITPDGPI-EFDCPDNVYILDQAEEAGHDLPYSCRAGSCSSCAGKIAGGAVDQTDGNFLDDDQLEEGWVLTCVAYPQSDVTIETHKEAEL 142          
BLAST of CX298270 vs. ExPASy Swiss-Prot
Match: FER1_PLEBO (Ferredoxin-1 OS=Plectonema boryanum GN=petF1 PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.568e-31
Identity = 62/98 (63.27%), Postives = 79/98 (80.61%), Query Frame = 1
Query:  226 MAVYKIKLIGPN-GEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 516
            M  +K+ LI    G     E  +D+YILDAAEE G+DLPYSCRAGACSTCAGK+ +G+VDQSD SFLDD+Q++AGY+LTC++YPTSDC I +H+EE+L
Sbjct:    1 MPSFKVTLINETEGLNTTIEVPDDEYILDAAEEQGIDLPYSCRAGACSTCAGKITAGTVDQSDQSFLDDDQIQAGYVLTCVAYPTSDCTILTHQEEDL 98          
The following BLAST results are available for this feature:
BLAST of CX298270 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
FER_SOLAB8.825e-3264.58Ferredoxin OS=Solanum abutiloides PE=1 SV=1[more]
FER_SYNP41.505e-3164.29Ferredoxin OS=Synechococcus sp. (strain PCC 7418) ... [more]
FER2_CYACA1.505e-3167.71Ferredoxin OS=Cyanidium caldarium GN=PETF PE=1 SV=... [more]
FER1_SPIOL1.505e-3148.32Ferredoxin-1, chloroplastic OS=Spinacia oleracea G... [more]
FER_COLES1.966e-3163.54Ferredoxin OS=Colocasia esculenta PE=1 SV=1[more]
FER5_MAIZE1.966e-3152.31Ferredoxin-5, chloroplastic OS=Zea mays GN=FDX5 PE... [more]
FER1_SYNP61.966e-3164.29Ferredoxin-1 OS=Synechococcus sp. (strain ATCC 271... [more]
FER1_SYNE71.966e-3164.29Ferredoxin-1 OS=Synechococcus elongatus (strain PC... [more]
FER_CAPAN2.568e-3159.09Ferredoxin, chloroplastic OS=Capsicum annuum GN=AP... [more]
FER1_PLEBO2.568e-3163.27Ferredoxin-1 OS=Plectonema boryanum GN=petF1 PE=3 ... [more]

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Properties
Property NameValue
Genbank descriptionC06010D08SK RindPdig24 Citrus clementina cDNA clone C06010D08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298270 ID=CX298270; Name=CX298270; organism=Citrus clementina; type=EST; length=705bp
GAGGCCCCCACCAACCCACTCGCCACCTCGCGCGCTCCGCCGCTCGATCT
CTTGCTTTTCTGGGTAAAGATGTCGACTGTGACACTTAGTGCCCCGTGCA
TGGTTAAAGCTGCACCCAGAAATCAACTATCAAGGAACTTAATCAAGAGC
CCATCCTCACTTGGGTCTGTTAAGGGCATCTCCAAGACCTTTGGCCTGAA
ATGCTCTCCCAATTTCCAAGCATCAATGGCTGTCTACAAGATTAAGCTGA
TTGGACCTAACGGTGAAGAGCATGAGTTTGAGGCCCAGGAAGACCAGTAC
ATCCTCGATGCAGCTGAGGAAGCAGGAGTCGACCTGCCCTATTCCTGCCG
CGCTGGTGCTTGCTCGACGTGTGCTGGGAAGTTGGTGTCTGGTTCAGTTG
ACCAGTCAGATGGTTCCTTCCTCGATGACAATCAAATGGAGGCTGGTTAT
CTGCTGACTTGCATTTCATACCCGACTTCAGATTGCGTGATTCAGTCTCA
CAAGGAAGAAGAGCTTTGCTGAGTACTGTCGGTTGATTTAGGGTTTTTCA
AGTATGAACTGTGATCAAGTGCCTGAGTATGCCGATAAGGTTTCTCATGG
ACCTACAATATTTTTTAGATTTCAGTGTGTTGTCTTGTGCAATGGAATCT
TTAAATTTTCATTTGGTTATACTATTACTGGCATTTTGGGAAAAAAAAAA
AAAAA
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