CX298270

Overview
NameCX298270
Unique NameCX298270
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length705
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX298270 vs. ExPASy Swiss-Prot
Match: FER_SOLLS (Ferredoxin OS=Solanum lasiocarpum PE=1 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.079e-29
Identity = 62/96 (64.58%), Postives = 76/96 (79.17%), Query Frame = 1
Query:  229 AVYKIKLIGPNGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 516
            A YK+KLI P+G   EF   +D YILD AEE G DLPYSCRAGACS+CAGK+V GSVDQSD SFLDD+Q+  G++LTC++YP S+  I++HKEE L
Sbjct:    1 ASYKVKLITPDGPI-EFNCPDDVYILDRAEEEGHDLPYSCRAGACSSCAGKIVDGSVDQSDNSFLDDDQIGGGFVLTCVAYPKSNVTIETHKEEAL 95          
BLAST of CX298270 vs. ExPASy Swiss-Prot
Match: FER2_PHYES (Ferredoxin-2 OS=Phytolacca esculenta PE=1 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.079e-29
Identity = 58/96 (60.42%), Postives = 77/96 (80.21%), Query Frame = 1
Query:  229 AVYKIKLIGPNGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 516
            A YK+  + P+G +       D Y+LDAAE+ G+DLPYSCRAGACS+CAGK+ +GSV+Q DGSFLD+ QMEAG++LTC++YPTSD  I++HKEE+L
Sbjct:    2 ASYKVTFVTPSGTK-TITCPADTYVLDAAEDTGLDLPYSCRAGACSSCAGKVTAGSVNQEDGSFLDEEQMEAGWVLTCVAYPTSDVTIETHKEEDL 96          
BLAST of CX298270 vs. ExPASy Swiss-Prot
Match: FER_BRYMA (Ferredoxin OS=Bryopsis maxima PE=1 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.409e-29
Identity = 56/96 (58.33%), Postives = 76/96 (79.17%), Query Frame = 1
Query:  229 AVYKIKLIGPNGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 516
            A YK+ L   +G E   +  ED +ILD AEE G+D+P+SCR+G+CSTCAGK+  G+VDQS+ +FLDD+QME GY+LTC++YPTSDC I +H+EEE+
Sbjct:    1 ASYKVTLKLDDGSEAVIDCDEDSFILDVAEEEGIDIPFSCRSGSCSTCAGKIEGGTVDQSEQTFLDDDQMEEGYVLTCVAYPTSDCTILTHQEEEM 96          
BLAST of CX298270 vs. ExPASy Swiss-Prot
Match: FER_CHLFU (Ferredoxin OS=Chlorella fusca PE=1 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.840e-29
Identity = 63/94 (67.02%), Postives = 74/94 (78.72%), Query Frame = 1
Query:  235 YKIKLIGPNGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 516
            YK+ L  P+GEE   E  ED YILDAAEEAG+DLPYSCRAGACS+CAGK+ SG VDQSD SFLDD QM  G++LTC++YPTSD  I +H+E  L
Sbjct:    1 YKVTLKTPSGEE-TIECPEDTYILDAAEEAGLDLPYSCRAGACSSCAGKVESGEVDQSDQSFLDDAQMGKGFVLTCVAYPTSDVTILTHQEAAL 93          
BLAST of CX298270 vs. ExPASy Swiss-Prot
Match: FER_SOLLY (Ferredoxin OS=Solanum lyratum PE=1 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.403e-29
Identity = 59/96 (61.46%), Postives = 77/96 (80.21%), Query Frame = 1
Query:  229 AVYKIKLIGPNGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 516
            A YK+KLI P G   EF   +D YILD+AEE G DLPYSCRAGACS+CAGK+ +G+VDQSD SFLDD+Q+  G++LTC++YP S+  I++HKE++L
Sbjct:    1 ATYKVKLITPEGPV-EFNCPDDVYILDSAEENGHDLPYSCRAGACSSCAGKITAGNVDQSDNSFLDDDQVAEGFVLTCVAYPKSNVTIETHKEDDL 95          
BLAST of CX298270 vs. ExPASy Swiss-Prot
Match: FER_MARPO (Ferredoxin OS=Marchantia polymorpha PE=1 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.403e-29
Identity = 59/94 (62.77%), Postives = 76/94 (80.85%), Query Frame = 1
Query:  235 YKIKLIGPNGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 516
            +K+ L  P G+    + ++D+YILDAAEEAG+ LPYSCRAGACS+CAGK+ +G VDQSD SFLDD+QM+ GY+LTCI+YPTSD  I +H+EE L
Sbjct:    2 FKVTLNTPTGQS-VIDVEDDEYILDAAEEAGLSLPYSCRAGACSSCAGKVTAGEVDQSDESFLDDDQMDEGYVLTCIAYPTSDLTIDTHQEEAL 94          
BLAST of CX298270 vs. ExPASy Swiss-Prot
Match: FER2_PHYAM (Ferredoxin-2 OS=Phytolacca americana PE=1 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.403e-29
Identity = 57/96 (59.38%), Postives = 78/96 (81.25%), Query Frame = 1
Query:  229 AVYKIKLIGPNGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 516
            A YK+  + P+G  +      D Y+LDAAEE+G+DLPYSCRAGACS+CAGK+ +G+V+Q DGSFL++ QMEAG++LTC++YPTSD  I++HKEE+L
Sbjct:    2 ASYKVTFVTPSGT-NTITCPADTYVLDAAEESGLDLPYSCRAGACSSCAGKVTAGAVNQEDGSFLEEEQMEAGWVLTCVAYPTSDVTIETHKEEDL 96          
BLAST of CX298270 vs. ExPASy Swiss-Prot
Match: FER1_HYONI (Ferredoxin-1 OS=Hyoscyamus niger PE=1 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.139e-29
Identity = 58/96 (60.42%), Postives = 78/96 (81.25%), Query Frame = 1
Query:  229 AVYKIKLIGPNGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 516
            A YK+KL+ P+G   EF   +D YILD AEE G +LPYSCRAG+CS+CAGK+ +G+VDQSDG+FLDD+Q+  G++LTC++YP SD  I++HKEE+L
Sbjct:    1 ATYKVKLVTPDGPV-EFNCPDDVYILDQAEEEGHELPYSCRAGSCSSCAGKVSAGTVDQSDGNFLDDDQIADGFVLTCVAYPQSDVTIETHKEEDL 95          
BLAST of CX298270 vs. ExPASy Swiss-Prot
Match: FER_LYCCN (Ferredoxin OS=Lycium chinense PE=1 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.099e-29
Identity = 58/96 (60.42%), Postives = 78/96 (81.25%), Query Frame = 1
Query:  229 AVYKIKLIGPNGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 516
            A YK+KL+ P+G   EF+  +D YILD AEE G +LPYSCRAG+CS+CAGK+ +G+VDQSDG+FLDD+Q+  G++LTC++YP SD  I++HKEE L
Sbjct:    1 ATYKVKLVTPDGPV-EFDCPDDVYILDQAEEEGHELPYSCRAGSCSSCAGKVSAGTVDQSDGNFLDDDQIADGFVLTCVAYPQSDVTIETHKEEAL 95          
BLAST of CX298270 vs. ExPASy Swiss-Prot
Match: FER4_ARATH (Probable ferredoxin-4, chloroplastic OS=Arabidopsis thaliana GN=FD4 PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.099e-29
Identity = 67/128 (52.34%), Postives = 85/128 (66.41%), Query Frame = 1
Query:  148 SPSSLGSVKGISKT--FGLKCSP-NFQASMAVY--KIKLIGPNGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 516
            SPS       ++ T  FGL  S  NF    A    K+KLI P GEE E E  ED  IL++AE AG++LPYSCR+G C TC GKLVSG VDQS GSFL++ Q++ GY+LTCI+ P  DCV+ +HK+ +L
Sbjct:   20 SPSQAQLTTRLNNTTYFGLSSSRGNFGKVFAKESRKVKLISPEGEEQEIEGNEDCCILESAENAGLELPYSCRSGTCGTCCGKLVSGKVDQSLGSFLEEEQIQKGYILTCIALPLEDCVVYTHKQSDL 147          
The following BLAST results are available for this feature:
BLAST of CX298270 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
FER_SOLLS1.079e-2964.58Ferredoxin OS=Solanum lasiocarpum PE=1 SV=1[more]
FER2_PHYES1.079e-2960.42Ferredoxin-2 OS=Phytolacca esculenta PE=1 SV=1[more]
FER_BRYMA1.409e-2958.33Ferredoxin OS=Bryopsis maxima PE=1 SV=1[more]
FER_CHLFU1.840e-2967.02Ferredoxin OS=Chlorella fusca PE=1 SV=1[more]
FER_SOLLY2.403e-2961.46Ferredoxin OS=Solanum lyratum PE=1 SV=1[more]
FER_MARPO2.403e-2962.77Ferredoxin OS=Marchantia polymorpha PE=1 SV=1[more]
FER2_PHYAM2.403e-2959.38Ferredoxin-2 OS=Phytolacca americana PE=1 SV=1[more]
FER1_HYONI3.139e-2960.42Ferredoxin-1 OS=Hyoscyamus niger PE=1 SV=1[more]
FER_LYCCN4.099e-2960.42Ferredoxin OS=Lycium chinense PE=1 SV=1[more]
FER4_ARATH4.099e-2952.34Probable ferredoxin-4, chloroplastic OS=Arabidopsi... [more]

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Properties
Property NameValue
Genbank descriptionC06010D08SK RindPdig24 Citrus clementina cDNA clone C06010D08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298270 ID=CX298270; Name=CX298270; organism=Citrus clementina; type=EST; length=705bp
GAGGCCCCCACCAACCCACTCGCCACCTCGCGCGCTCCGCCGCTCGATCT
CTTGCTTTTCTGGGTAAAGATGTCGACTGTGACACTTAGTGCCCCGTGCA
TGGTTAAAGCTGCACCCAGAAATCAACTATCAAGGAACTTAATCAAGAGC
CCATCCTCACTTGGGTCTGTTAAGGGCATCTCCAAGACCTTTGGCCTGAA
ATGCTCTCCCAATTTCCAAGCATCAATGGCTGTCTACAAGATTAAGCTGA
TTGGACCTAACGGTGAAGAGCATGAGTTTGAGGCCCAGGAAGACCAGTAC
ATCCTCGATGCAGCTGAGGAAGCAGGAGTCGACCTGCCCTATTCCTGCCG
CGCTGGTGCTTGCTCGACGTGTGCTGGGAAGTTGGTGTCTGGTTCAGTTG
ACCAGTCAGATGGTTCCTTCCTCGATGACAATCAAATGGAGGCTGGTTAT
CTGCTGACTTGCATTTCATACCCGACTTCAGATTGCGTGATTCAGTCTCA
CAAGGAAGAAGAGCTTTGCTGAGTACTGTCGGTTGATTTAGGGTTTTTCA
AGTATGAACTGTGATCAAGTGCCTGAGTATGCCGATAAGGTTTCTCATGG
ACCTACAATATTTTTTAGATTTCAGTGTGTTGTCTTGTGCAATGGAATCT
TTAAATTTTCATTTGGTTATACTATTACTGGCATTTTGGGAAAAAAAAAA
AAAAA
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