CX298285

Overview
NameCX298285
Unique NameCX298285
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length619
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX298285 vs. ExPASy Swiss-Prot
Match: ATG8_YEAS7 (Autophagy-related protein 8 OS=Saccharomyces cerevisiae (strain YJM789) GN=ATG8 PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 5.385e-45
Identity = 86/115 (74.78%), Postives = 104/115 (90.43%), Query Frame = 2
Query:   53 KSSFKLEHPLERRQAESARIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFG 397
            KS+FK E+P E+R+AES RI +++ +RIPVI EKAE+SDIP+IDK+KYLVPADLTVGQFVYV+RKRI L  EKAIFIFV + LPPTAA+MSAIY+E+KD+DGFLY+TYSGENTFG
Sbjct:    2 KSTFKSEYPFEKRKAESERIADRFKNRIPVICEKAEKSDIPEIDKRKYLVPADLTVGQFVYVIRKRIMLPPEKAIFIFVNDTLPPTAALMSAIYQEHKDKDGFLYVTYSGENTFG 116          
BLAST of CX298285 vs. ExPASy Swiss-Prot
Match: ATG8_SCHPO (Autophagy-related protein 8 OS=Schizosaccharomyces pombe GN=atg8 PE=2 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 5.385e-45
Identity = 88/118 (74.58%), Postives = 100/118 (84.75%), Query Frame = 2
Query:   53 KSSFKLEHPLERRQAESARIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFGASF 406
            +S FK +   E+R+ ES RIREKYPDRIPVI EK ++SDI  IDKKKYLVP+DLTVGQFVYV+RKRIKLS EKAIFIF+  ILPPTAA+MS IYEE+K EDGFLY+TYSGENTFG  F
Sbjct:    2 RSQFKDDFSFEKRKTESQRIREKYPDRIPVICEKVDKSDIAAIDKKKYLVPSDLTVGQFVYVIRKRIKLSPEKAIFIFIDEILPPTAALMSTIYEEHKSEDGFLYITYSGENTFGTVF 119          
BLAST of CX298285 vs. ExPASy Swiss-Prot
Match: ATG8_CANGA (Autophagy-related protein 8 OS=Candida glabrata GN=ATG8 PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 7.033e-45
Identity = 85/115 (73.91%), Postives = 103/115 (89.57%), Query Frame = 2
Query:   53 KSSFKLEHPLERRQAESARIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFG 397
            KSSFK E+P E+R+AES RI EK+ +RIPVI EKAE+SDIP++DK+KYLVPADLTVGQFVYV+RKRI L  EKAIFIFV + LPPTA++MS +Y+E+KD+DGFLY+TYSGENTFG
Sbjct:    2 KSSFKSEYPFEKRKAESERISEKFQNRIPVICEKAEKSDIPEVDKRKYLVPADLTVGQFVYVIRKRIMLPPEKAIFIFVNDTLPPTASLMSQVYQEHKDKDGFLYVTYSGENTFG 116          
BLAST of CX298285 vs. ExPASy Swiss-Prot
Match: ATG8_PICST (Autophagy-related protein 8 OS=Pichia stipitis GN=ATG8 PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 9.185e-45
Identity = 84/115 (73.04%), Postives = 101/115 (87.83%), Query Frame = 2
Query:   53 KSSFKLEHPLERRQAESARIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFG 397
            +S FK EHP E+RQAE+ RI +++ DR+PVI EK E SDIP+IDK+KYLVP DL+VGQFVYV+RKRIKL +EKAIFIFV +ILPPTAA++S IYEE+KDEDGFLY+ YSGENTFG
Sbjct:    2 RSQFKDEHPFEKRQAEATRIAQRFKDRVPVICEKVENSDIPEIDKRKYLVPVDLSVGQFVYVIRKRIKLPSEKAIFIFVNDILPPTAALISTIYEEHKDEDGFLYVLYSGENTFG 116          
BLAST of CX298285 vs. ExPASy Swiss-Prot
Match: ATG8_PICAN (Autophagy-related protein 8 OS=Pichia angusta GN=ATG8 PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 9.185e-45
Identity = 86/115 (74.78%), Postives = 102/115 (88.70%), Query Frame = 2
Query:   53 KSSFKLEHPLERRQAESARIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFG 397
            +S FK EHP ERR+AE++RIR K+ DRIPVI EK E SDIP+IDK+KYLVP+DLTVGQFVYV+RKRI+L +EKAIFIFV +ILPPTA++MS IYE+ KDEDGFLY+ YSGENTFG
Sbjct:    2 RSQFKDEHPFERRKAEASRIRGKFLDRIPVICEKVEESDIPEIDKRKYLVPSDLTVGQFVYVIRKRIQLPSEKAIFIFVNDILPPTASLMSTIYEQYKDEDGFLYILYSGENTFG 116          
BLAST of CX298285 vs. ExPASy Swiss-Prot
Match: ATG8_DEBHA (Autophagy-related protein 8 OS=Debaryomyces hansenii GN=ATG8 PE=3 SV=2)

HSP 1 Score: 177.178 bits (448), Expect = 5.954e-44
Identity = 83/115 (72.17%), Postives = 101/115 (87.83%), Query Frame = 2
Query:   53 KSSFKLEHPLERRQAESARIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFG 397
            +S FK EHP E+R+AE+ RI +++ DR+PVI EKAE SDI +IDK+KYLVP DL+VGQFVYV+RKRIKL +EKAIFIF+ +ILPPTAA+MS IYEE+KDEDGFLY+ YSGENTFG
Sbjct:    2 RSQFKDEHPFEKRKAEATRITQRFNDRLPVICEKAENSDIQEIDKRKYLVPGDLSVGQFVYVIRKRIKLPSEKAIFIFINDILPPTAALMSTIYEEHKDEDGFLYVLYSGENTFG 116          
BLAST of CX298285 vs. ExPASy Swiss-Prot
Match: ATG8_ASHGO (Autophagy-related protein 8 OS=Ashbya gossypii GN=ATG8 PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 8.597e-43
Identity = 80/115 (69.57%), Postives = 103/115 (89.57%), Query Frame = 2
Query:   56 SSFKLEHPLERRQAESARIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFGA 400
            SSFK E+P E+R+AES RI  ++ +R+PVI E+AE+SDIP++D++KYLVPADLTVGQFVYV+R+RIKL AEKAIFIFV + LPPTAA+M A+Y+E+KD+DGFLY+ YSGENTFG+
Sbjct:    2 SSFKSEYPFEKRKAESERICSQFENRVPVICERAEKSDIPEVDRRKYLVPADLTVGQFVYVIRRRIKLPAEKAIFIFVNDTLPPTAALMFAVYQEHKDKDGFLYVKYSGENTFGS 116          
BLAST of CX298285 vs. ExPASy Swiss-Prot
Match: ATG8_KLULA (Autophagy-related protein 8 OS=Kluyveromyces lactis GN=ATG8 PE=3 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 1.915e-42
Identity = 82/115 (71.30%), Postives = 101/115 (87.83%), Query Frame = 2
Query:   53 KSSFKLEHPLERRQAESARIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFG 397
            KS+FK E P E+R+AES RI +K+ +RIPVI E+  +SDIPDIDK+KYLVP DLTVGQFVYV+RKRIKL AEKAIFIFV + LPPTAA+MS+IY+++KD+DGFLY++YS ENTFG
Sbjct:    2 KSAFKSEFPFEKRKAESERIVQKFHNRIPVICERGGKSDIPDIDKRKYLVPGDLTVGQFVYVIRKRIKLPAEKAIFIFVNDTLPPTAALMSSIYQQHKDKDGFLYVSYSSENTFG 116          
BLAST of CX298285 vs. ExPASy Swiss-Prot
Match: ATG8_DICDI (Autophagy-related protein 8 OS=Dictyostelium discoideum GN=atg8 PE=1 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 5.573e-42
Identity = 83/116 (71.55%), Postives = 100/116 (86.21%), Query Frame = 2
Query:   56 SSFKLEHPLERRQAESARIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRI-KLSAEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFGA 400
            SSFK +HPL++R+  + RIR KY DRIPVIVEKA RSD PDIDKKKYLVPAD+TVG+FVY +RK + K+SAEKAI++FV N +PPTAA++S IYE  KDEDGFLY+TYSGENTFG+
Sbjct:    5 SSFKNDHPLDKRREVAERIRSKYLDRIPVIVEKAPRSDAPDIDKKKYLVPADITVGKFVYEIRKHMTKVSAEKAIYLFVNNTIPPTAALISQIYERYKDEDGFLYITYSGENTFGS 120          
BLAST of CX298285 vs. ExPASy Swiss-Prot
Match: GBRL2_RAT (Gamma-aminobutyric acid receptor-associated protein-like 2 OS=Rattus norvegicus GN=Gabarapl2 PE=2 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 3.499e-36
Identity = 71/115 (61.74%), Postives = 90/115 (78.26%), Query Frame = 2
Query:   53 KSSFKLEHPLERRQAESARIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFG 397
            K  FK +H LE R  ESA+IR KYPDR+PVIVEK   S I DIDK+KYLVP+D+TV QF++++RKRI+L +EKAIF+FV   +P ++  M  +YE+ KDEDGFLY+ YSGENTFG
Sbjct:    2 KWMFKEDHSLEHRCVESAKIRAKYPDRVPVIVEKVSGSQIVDIDKRKYLVPSDITVAQFMWIIRKRIQLPSEKAIFLFVDKTVPQSSLTMGQLYEKEKDEDGFLYVAYSGENTFG 116          
The following BLAST results are available for this feature:
BLAST of CX298285 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
ATG8_YEAS75.385e-4574.78Autophagy-related protein 8 OS=Saccharomyces cerev... [more]
ATG8_SCHPO5.385e-4574.58Autophagy-related protein 8 OS=Schizosaccharomyces... [more]
ATG8_CANGA7.033e-4573.91Autophagy-related protein 8 OS=Candida glabrata GN... [more]
ATG8_PICST9.185e-4573.04Autophagy-related protein 8 OS=Pichia stipitis GN=... [more]
ATG8_PICAN9.185e-4574.78Autophagy-related protein 8 OS=Pichia angusta GN=A... [more]
ATG8_DEBHA5.954e-4472.17Autophagy-related protein 8 OS=Debaryomyces hansen... [more]
ATG8_ASHGO8.597e-4369.57Autophagy-related protein 8 OS=Ashbya gossypii GN=... [more]
ATG8_KLULA1.915e-4271.30Autophagy-related protein 8 OS=Kluyveromyces lacti... [more]
ATG8_DICDI5.573e-4271.55Autophagy-related protein 8 OS=Dictyostelium disco... [more]
GBRL2_RAT3.499e-3661.74Gamma-aminobutyric acid receptor-associated protei... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC06010E11SK RindPdig24 Citrus clementina cDNA clone C06010E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298285 ID=CX298285; Name=CX298285; organism=Citrus clementina; type=EST; length=619bp
AGGTTCATTTTCCCCTTGGAAGCAGTAGAAAGAACAAGGAGAAGCTATGG
CCAAGAGCTCCTTCAAGCTTGAACACCCACTCGAAAGGAGGCAGGCTGAA
TCTGCCCGTATCAGGGAGAAGTATCCTGATAGAATACCAGTGATTGTGGA
GAAGGCTGAAAGGAGTGACATACCTGATATTGACAAAAAAAAATACCTGG
TTCCTGCTGATCTGACTGTTGGACAATTTGTTTATGTGGTCCGGAAGAGG
ATAAAGCTCAGTGCTGAGAAGGCCATATTCATATTTGTCAAGAACATTTT
GCCACCCACTGCTGCAATGATGTCTGCAATTTATGAGGAAAACAAAGATG
AGGATGGCTTCCTTTACATGACTTACAGTGGGGAGAACACATTCGGGGCA
TCTTTCTAAGGGAATCAACTGAACTTCTGTAGATTAACTCTGAAAAGACT
TGATGGAAATATGTAAATCCTTTGCTATTTGCTTTCAACTGAGGGAGCAC
TTGGAAAGCATGATCTTCCTGGACGCAGCCCCTTCTTAAAGTTTGGATCT
ATTGTTACTCCTCTTTATCTTATTTGTTGCAGTAAATATTCGTGATTTCA
AAAAAAAAAAAAAAAAAAA
back to top