CX298309

Overview
NameCX298309
Unique NameCX298309
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length708
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX298309 vs. ExPASy Swiss-Prot
Match: NAMA_BACAC (NADPH dehydrogenase OS=Bacillus anthracis (strain CDC 684 / NRRL 3495) GN=namA PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.354e-14
Identity = 59/196 (30.10%), Postives = 93/196 (47.45%), Query Frame = 3
Query:   57 PRRLTTDEIPQIVNDFRLAARNAIEAGFDGIELHGAHGFLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFANYMESGDSNPEALGLYMAESLNKY------GILYCH--MVEPRMKTVGEKSECPHSLLPMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRLFLANPDLPR 620
            P  ++  +I   +  F+ AA  + +AGFD IE+HGAHG+LI++F+    N RTD+YGGS ENR RF  EI++++ NE+    + +R+S       + D +P+ L +       K+       ++ C    V P    V    +  ++      A   T  V          + +    ADL+  GR  L NP  PR
Sbjct:  131 PVEMSIHQIKNTILAFQQAAIRSKQAGFDVIEIHGAHGYLINEFLSPLSNKRTDEYGGSPENRYRFLREIIDSI-NEVWNGPLFVRIS-------ANDYHPDGLTVQDYVQYTKWMKEQGVDLIDCSSGAVVPARIDVYPGYQVQYAKHIKEHANIATGAVGLITTGAQAEQILNNNEADLIFIGRELLRNPYFPR 318          
BLAST of CX298309 vs. ExPASy Swiss-Prot
Match: NAMA_BACAA (NADPH dehydrogenase OS=Bacillus anthracis (strain A0248) GN=namA PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.354e-14
Identity = 59/196 (30.10%), Postives = 93/196 (47.45%), Query Frame = 3
Query:   57 PRRLTTDEIPQIVNDFRLAARNAIEAGFDGIELHGAHGFLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFANYMESGDSNPEALGLYMAESLNKY------GILYCH--MVEPRMKTVGEKSECPHSLLPMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRLFLANPDLPR 620
            P  ++  +I   +  F+ AA  + +AGFD IE+HGAHG+LI++F+    N RTD+YGGS ENR RF  EI++++ NE+    + +R+S       + D +P+ L +       K+       ++ C    V P    V    +  ++      A   T  V          + +    ADL+  GR  L NP  PR
Sbjct:  131 PVEMSIHQIKNTILAFQQAAIRSKQAGFDVIEIHGAHGYLINEFLSPLSNKRTDEYGGSPENRYRFLREIIDSI-NEVWNGPLFVRIS-------ANDYHPDGLTVQDYVQYTKWMKEQGVDLIDCSSGAVVPARIDVYPGYQVQYAKHIKEHANIATGAVGLITTGAQAEQILNNNEADLIFIGRELLRNPYFPR 318          
BLAST of CX298309 vs. ExPASy Swiss-Prot
Match: NAMA_BACWK (NADPH dehydrogenase OS=Bacillus weihenstephanensis (strain KBAB4) GN=namA PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.084e-13
Identity = 64/203 (31.53%), Postives = 96/203 (47.29%), Query Frame = 3
Query:   57 PRRLTTDEIPQIVNDFRLAARNAIEAGFDGIELHGAHGFLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFANYMESGDSNPEALGL--------YMAE------SLNKYGILYCHM-VEPRMKTVGEKSECPHSLLPMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRLFLANPDLPR 620
            P  +   +I + V+ F+ AA  +  AG D IELHGAHG+LI++F+    N R D+YGGS ENR RF  EI++AV NE+    + +R+S       + D +P+ L +        +M E        +   ++  H+ V P  +    K    H    +  A     L+  G   E   + +    ADL+  GR  L NP  PR
Sbjct:  131 PVEMNKQQIKETVSAFQKAALRSKRAGVDVIELHGAHGYLINEFLSPLSNKRIDEYGGSPENRYRFLREIIDAV-NEVWNGPLFVRIS-------ANDYHPDGLTVQDYVQYTGWMKEQGVDLIDCSSGAVVPAHIDVYPGYQVQYAKHIKEH----VNIATGAVGLITTGSQAE---QILNNNEADLIFIGRELLRNPYFPR 318          
BLAST of CX298309 vs. ExPASy Swiss-Prot
Match: NAMA_BACC3 (NADPH dehydrogenase OS=Bacillus cereus (strain 03BB102) GN=namA PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.415e-13
Identity = 58/196 (29.59%), Postives = 92/196 (46.94%), Query Frame = 3
Query:   57 PRRLTTDEIPQIVNDFRLAARNAIEAGFDGIELHGAHGFLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFANYMESGDSNPEALGLYMAESLNKY------GILYCH--MVEPRMKTVGEKSECPHSLLPMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRLFLANPDLPR 620
            P  ++  +I   +  F+ AA  + +AGFD IE+HGAHG+LI++F+    N RTD+YGGS E R RF  EI++++ NE+    + +R+S       + D +P+ L +       K+       ++ C    V P    V    +  ++      A   T  V          + +    ADL+  GR  L NP  PR
Sbjct:  131 PVEMSIQQIKNTILAFQQAAVRSKQAGFDVIEIHGAHGYLINEFLSPLSNKRTDEYGGSPEKRYRFLREIIDSI-NEVWNGPLFVRIS-------ANDYHPDGLTVQDYVQYTKWMKEQGVDLIDCSSGAVVPARIDVYPGYQVQYAKHIKEHANIATGAVGLITTGAQAEQILTNNEADLIFIGRELLRNPYFPR 318          
BLAST of CX298309 vs. ExPASy Swiss-Prot
Match: NAMA_BACAH (NADPH dehydrogenase OS=Bacillus thuringiensis (strain Al Hakam) GN=namA PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.415e-13
Identity = 58/196 (29.59%), Postives = 92/196 (46.94%), Query Frame = 3
Query:   57 PRRLTTDEIPQIVNDFRLAARNAIEAGFDGIELHGAHGFLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFANYMESGDSNPEALGLYMAESLNKY------GILYCH--MVEPRMKTVGEKSECPHSLLPMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRLFLANPDLPR 620
            P  ++  +I   +  F+ AA  + +AGFD IE+HGAHG+LI++F+    N RTD+YGGS E R RF  EI++++ NE+    + +R+S       + D +P+ L +       K+       ++ C    V P    V    +  ++      A   T  V          + +    ADL+  GR  L NP  PR
Sbjct:  131 PVEMSIQQIKNTILAFQQAAVRSKQAGFDVIEIHGAHGYLINEFLSPLSNKRTDEYGGSPEKRYRFLREIIDSI-NEVWNGPLFVRIS-------ANDYHPDGLTVQDYVQYTKWMKEQGVDLIDCSSGAVVPARIDVYPGYQVQYAKHIKEHANIATGAVGLITTGAQAEQILTNNEADLIFIGRELLRNPYFPR 318          
BLAST of CX298309 vs. ExPASy Swiss-Prot
Match: NAMA_BACHK (NADPH dehydrogenase OS=Bacillus thuringiensis subsp. konkukian GN=namA PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.849e-13
Identity = 58/196 (29.59%), Postives = 92/196 (46.94%), Query Frame = 3
Query:   57 PRRLTTDEIPQIVNDFRLAARNAIEAGFDGIELHGAHGFLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFANYMESGDSNPEALGLYMAESLNKY------GILYCH--MVEPRMKTVGEKSECPHSLLPMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRLFLANPDLPR 620
            P  ++  +I   +  F+ AA  + +AGFD IE+HGAHG+LI++F+    N RTD+YGGS E R RF  EI++++ NE+    + +R+S       + D +P+ L +       K+       ++ C    V P    V    +  ++      A   T  V          + +    ADL+  GR  L NP  PR
Sbjct:  131 PVEMSIQQIKNTILAFQQAAVRSKQAGFDVIEIHGAHGYLINEFLSPLSNKRTDEYGGSPEKRYRFLREIIDSI-NEVWNGPLFVRIS-------ANDYHPDGLTVQDYIQYTKWMKEQGVDLIDCSSGAVVPARIDVYPGYQVQYAKHIKEHANIATGAVGLITTGAQAEQILTNNEADLIFIGRELLRNPYFPR 318          
BLAST of CX298309 vs. ExPASy Swiss-Prot
Match: BAIH_EUBSP (NADH-dependent flavin oxidoreductase OS=Eubacterium sp. (strain VPI 12708) GN=baiH PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.414e-13
Identity = 67/225 (29.78%), Postives = 100/225 (44.44%), Query Frame = 3
Query:    3 PLTPQIRTNGVDIAQFTPPRRLTTDEIPQIVNDFRLAARNAIEAGFDGIELHGAHGFLID-QFMKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGAD-RVGIRLSPFANYMESGDSNPEALGLYMAESLNKYGILYCHMVEPRMKTVGEKSECPHSLLPMRKAFKG----------------TFLVAGGYDREDGNKAIAEGRADLVVYGRLFLANPDLPRR 623
            PL P   TN    A     R ++ DEI  I+  F  AAR A EAG   I LH AH +++   F+    N R D+YGGSL+NR RF +E++E     +  D  + +R+S     M  G+S  +   LY+A      G+    M+E    + G + E    ++P +   +G                 + V    D     + +  G  D V  GR  LA+PDL ++
Sbjct:  121 PLGPSANTN----ANCHVSRSISIDEIHDIIKQFGQAARRAEEAGCGAISLHCAHAYMLPGSFLSPLRNKRMDEYGGSLDNRARFVIEMIEEARRNVSPDFPIFLRISG-DERMVGGNSLEDM--LYLAPKFEAAGV---SMLE---VSGGTQYEGLEHIIPCQNKSRGVNVYEASEIKKVVGIPVYAVGKINDIRYAAEIVERGLVDGVAMGRPLLADPDLCKK 332          
BLAST of CX298309 vs. ExPASy Swiss-Prot
Match: NAMA_LISIN (NADPH dehydrogenase OS=Listeria innocua GN=namA PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.153e-13
Identity = 59/189 (31.22%), Postives = 89/189 (47.09%), Query Frame = 3
Query:   57 PRRLTTDEIPQIVNDFRLAARNAIEAGFDGIELHGAHGFLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFANYMESGDSNPEALGLYMAESLNKYGILYCHMVEPRMKTVGEKSECPHSLLPMRKAF-KGTFLVAGGYD----REDGNKAIAEGRADLVVYGRLFLANP 608
            P  LT + I ++V DF+ AA  A EAGFD IE+H AHG+LI QF+    N R D YGG   NR +   +I++AV  E+    + +R+S   +Y   G    + +    A+ +   G+    +    +  V E    P   +P      +G  +  G        E   + +   RADL++ GR  L NP
Sbjct:  130 PVELTKEAIKEVVADFKRAAYRAKEAGFDVIEIHAAHGYLIHQFLSPISNRREDNYGGPAGNRYKILSDIIKAV-KEVWDGPIIVRVSA-TDYAHGGLQLEDHIP--FAKWMKADGVELIDVSTGGLVNV-EPPVFPGYQVPFADEIRRGAGIATGALGLITRGEQAEEILCNERADLIIIGRELLRNP 313          
BLAST of CX298309 vs. ExPASy Swiss-Prot
Match: NAMA_LISMO (NADPH dehydrogenase OS=Listeria monocytogenes GN=namA PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.118e-13
Identity = 56/188 (29.79%), Postives = 88/188 (46.81%), Query Frame = 3
Query:   57 PRRLTTDEIPQIVNDFRLAARNAIEAGFDGIELHGAHGFLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFANYMESGDSNPEALGLYMAESLNKYGILYCHMVEPRMKTVGEKSECPHSLLPMRKAFKGTFLVAGGYD----REDGNKAIAEGRADLVVYGRLFLANP 608
            P  LT + I ++V DF+ AA  A EAGFD IE+H AHG+LI QF+    N R D YGG   NR +   +I++AV  E+    + +R+S   +Y   G    + +    A+ +   G+    +    +  V       + +    +  +G  +  G        E   + +   RADL++ GR  L NP
Sbjct:  130 PVELTKEAIKEVVADFKRAAYRAKEAGFDVIEIHAAHGYLIHQFLSPITNRREDNYGGPAGNRYKILSDIIKAV-KEVWDGPIIVRVSA-TDYAHGGLQLEDHIP--FAKWMKADGVELIDVSTGGLVNVAPPVFPGYQVPFADEIRRGAGIATGALGLITRGEQAEEILCNERADLIIVGRELLRNP 313          
BLAST of CX298309 vs. ExPASy Swiss-Prot
Match: NAMA_LISMH (NADPH dehydrogenase OS=Listeria monocytogenes serotype 4a (strain HCC23) GN=namA PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.118e-13
Identity = 56/188 (29.79%), Postives = 88/188 (46.81%), Query Frame = 3
Query:   57 PRRLTTDEIPQIVNDFRLAARNAIEAGFDGIELHGAHGFLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVSNEIGADRVGIRLSPFANYMESGDSNPEALGLYMAESLNKYGILYCHMVEPRMKTVGEKSECPHSLLPMRKAFKGTFLVAGGYD----REDGNKAIAEGRADLVVYGRLFLANP 608
            P  LT + I ++V DF+ AA  A EAGFD IE+H AHG+LI QF+    N R D YGG   NR +   +I++AV  E+    + +R+S   +Y   G    + +    A+ +   G+    +    +  V       + +    +  +G  +  G        E   + +   RADL++ GR  L NP
Sbjct:  130 PVELTKEAIKEVVADFKRAAYRAKEAGFDVIEIHAAHGYLIHQFLSPITNRREDNYGGPAGNRYKILSDIIKAV-KEVWDGPIIVRVSA-TDYAHGGLQLEDHIP--FAKWMKADGVELIDVSTGGLVNVAPPVFPGYQVPFADEIRRGAGIATGALGLITRGEQAEEILCNERADLIIVGRELLRNP 313          
The following BLAST results are available for this feature:
BLAST of CX298309 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
NAMA_BACAC6.354e-1430.10NADPH dehydrogenase OS=Bacillus anthracis (strain ... [more]
NAMA_BACAA6.354e-1430.10NADPH dehydrogenase OS=Bacillus anthracis (strain ... [more]
NAMA_BACWK1.084e-1331.53NADPH dehydrogenase OS=Bacillus weihenstephanensis... [more]
NAMA_BACC31.415e-1329.59NADPH dehydrogenase OS=Bacillus cereus (strain 03B... [more]
NAMA_BACAH1.415e-1329.59NADPH dehydrogenase OS=Bacillus thuringiensis (str... [more]
NAMA_BACHK1.849e-1329.59NADPH dehydrogenase OS=Bacillus thuringiensis subs... [more]
BAIH_EUBSP2.414e-1329.78NADH-dependent flavin oxidoreductase OS=Eubacteriu... [more]
NAMA_LISIN3.153e-1331.22NADPH dehydrogenase OS=Listeria innocua GN=namA PE... [more]
NAMA_LISMO4.118e-1329.79NADPH dehydrogenase OS=Listeria monocytogenes GN=n... [more]
NAMA_LISMH4.118e-1329.79NADPH dehydrogenase OS=Listeria monocytogenes sero... [more]

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Properties
Property NameValue
Genbank descriptionC06010G11SK RindPdig24 Citrus clementina cDNA clone C06010G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298309 ID=CX298309; Name=CX298309; organism=Citrus clementina; type=EST; length=708bp
AGCCATTGACACCTCAAATCCGCACTAATGGTGTTGATATTGCACAATTC
ACTCCTCCAAGGCGGCTAACGACAGATGAAATCCCTCAAATTGTGAATGA
TTTCAGGCTTGCTGCAAGAAATGCAATTGAGGCTGGTTTCGATGGCATTG
AGCTCCACGGTGCACATGGCTTCCTAATTGACCAATTTATGAAGGATCAA
GTGAATGATCGAACAGACCAGTATGGAGGATCCTTAGAGAACCGTTGCCG
TTTTGCTTTAGAAATAGTTGAAGCTGTTTCCAATGAAATAGGGGCAGATA
GGGTTGGGATAAGACTATCTCCGTTTGCAAACTATATGGAATCAGGGGAC
TCTAACCCAGAAGCTTTAGGTCTTTACATGGCAGAATCCTTGAACAAATA
CGGTATCCTCTATTGTCACATGGTTGAGCCGAGGATGAAAACAGTTGGAG
AAAAATCTGAATGTCCTCACAGTTTGCTGCCCATGAGAAAGGCTTTCAAG
GGTACTTTTCTTGTCGCTGGGGGTTATGACAGGGAAGATGGAAACAAAGC
TATTGCTGAAGGCCGTGCAGATCTTGTTGTTTATGGTCGCTTGTTCTTGG
CTAATCCAGATTTACCCAGGAGATTTGAGTTCAATGCCCCCCTCAATAAG
TACAACAGAGAAACATTCTATGTTTCCGATCCTGTTGTTGGTTACACGGA
TTATCCCT
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