CX298417

Overview
NameCX298417
Unique NameCX298417
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length703
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX298417 vs. ExPASy Swiss-Prot
Match: CLPP_SOYBN (ATP-dependent Clp protease proteolytic subunit OS=Glycine max GN=clpP PE=3 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 3.756e-43
Identity = 85/99 (85.86%), Postives = 91/99 (91.92%), Query Frame = 3
Query:  192 LINRLYRERLLFLGQMVESDISNQLIGIMVYLSIENETKDLYLFINSPGGWVIPGIAIYDTMQFVRPDVQTICMGLAASMGSFLLAAGASTKRLAFPHA 488
            + NRLYRERLLFLGQ V+S+ISNQLI +MVYLSIE E KDLYLFINSPGGWVIPGIAIYDTMQFV+PDVQT+CMGLAASMGSFLLA G  TKRLAFPHA
Sbjct:   23 IYNRLYRERLLFLGQEVDSEISNQLISLMVYLSIEEENKDLYLFINSPGGWVIPGIAIYDTMQFVQPDVQTVCMGLAASMGSFLLAGGEITKRLAFPHA 121          
BLAST of CX298417 vs. ExPASy Swiss-Prot
Match: CLPP_PANGI (ATP-dependent Clp protease proteolytic subunit OS=Panax ginseng GN=clpP PE=3 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 3.756e-43
Identity = 85/103 (82.52%), Postives = 93/103 (90.29%), Query Frame = 3
Query:  180 YCFILINRLYRERLLFLGQMVESDISNQLIGIMVYLSIENETKDLYLFINSPGGWVIPGIAIYDTMQFVRPDVQTICMGLAASMGSFLLAAGASTKRLAFPHA 488
            Y   + NRLYRERLLFLGQ V S+ISNQLIG+MVYLSIE++TKDLYLF+NSPGGWV+PGIAIYDTMQFVRPDV TICMGLAASMGSF+LA G  TKRLAFPHA
Sbjct:   19 YWVDIYNRLYRERLLFLGQPVASEISNQLIGLMVYLSIEDDTKDLYLFMNSPGGWVLPGIAIYDTMQFVRPDVHTICMGLAASMGSFILAGGEITKRLAFPHA 121          
BLAST of CX298417 vs. ExPASy Swiss-Prot
Match: CLPP_MORIN (ATP-dependent Clp protease proteolytic subunit OS=Morus indica GN=clpP PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 6.407e-43
Identity = 83/99 (83.84%), Postives = 93/99 (93.94%), Query Frame = 3
Query:  192 LINRLYRERLLFLGQMVESDISNQLIGIMVYLSIENETKDLYLFINSPGGWVIPGIAIYDTMQFVRPDVQTICMGLAASMGSFLLAAGASTKRLAFPHA 488
            +INRLYRERLLFLGQ V+S+ISNQLIG+MV+LSIE++TKDLYLFINSPGGWVIPG+ IYDTMQFV+PDVQTICMGLAASMGSF+L  G  TKRLAFPHA
Sbjct:   23 VINRLYRERLLFLGQEVDSEISNQLIGLMVFLSIEDDTKDLYLFINSPGGWVIPGLGIYDTMQFVQPDVQTICMGLAASMGSFILVGGEITKRLAFPHA 121          
BLAST of CX298417 vs. ExPASy Swiss-Prot
Match: CLPP_LOTJA (ATP-dependent Clp protease proteolytic subunit OS=Lotus japonicus GN=clpP PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 6.407e-43
Identity = 84/99 (84.85%), Postives = 92/99 (92.93%), Query Frame = 3
Query:  192 LINRLYRERLLFLGQMVESDISNQLIGIMVYLSIENETKDLYLFINSPGGWVIPGIAIYDTMQFVRPDVQTICMGLAASMGSFLLAAGASTKRLAFPHA 488
            + NRLYRERLLFLGQ V S+ISNQLIG+MVYLSIE++ KDLYLFINSPGGWVIPGIAIYDTMQFV+PDVQT+CMGLAASMGSF+LA G  TKRLAFPHA
Sbjct:   23 IYNRLYRERLLFLGQEVNSEISNQLIGLMVYLSIEDDKKDLYLFINSPGGWVIPGIAIYDTMQFVQPDVQTVCMGLAASMGSFVLAGGKITKRLAFPHA 121          
BLAST of CX298417 vs. ExPASy Swiss-Prot
Match: CLPP_NANDO (ATP-dependent Clp protease proteolytic subunit OS=Nandina domestica GN=clpP PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 8.368e-43
Identity = 84/97 (86.60%), Postives = 90/97 (92.78%), Query Frame = 3
Query:  198 NRLYRERLLFLGQMVESDISNQLIGIMVYLSIENETKDLYLFINSPGGWVIPGIAIYDTMQFVRPDVQTICMGLAASMGSFLLAAGASTKRLAFPHA 488
            NRLYRERLLFLGQ V+S+ISNQLIG+MVYLSIE+ETKDLYLFINSPGGWVIPG+AIYDTMQFV PDV TICMGLAASMGSF+L  G  TKRLAFPHA
Sbjct:   25 NRLYRERLLFLGQEVDSEISNQLIGLMVYLSIEDETKDLYLFINSPGGWVIPGVAIYDTMQFVPPDVHTICMGLAASMGSFILVGGEITKRLAFPHA 121          
BLAST of CX298417 vs. ExPASy Swiss-Prot
Match: CLPP_EPIVI (ATP-dependent Clp protease proteolytic subunit OS=Epifagus virginiana GN=clpP PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 8.368e-43
Identity = 83/97 (85.57%), Postives = 91/97 (93.81%), Query Frame = 3
Query:  198 NRLYRERLLFLGQMVESDISNQLIGIMVYLSIENETKDLYLFINSPGGWVIPGIAIYDTMQFVRPDVQTICMGLAASMGSFLLAAGASTKRLAFPHA 488
            NRLYRERLLFLGQ V+SDISNQLIG+MVYLSIE++TK++YLFINSPGGWVIPG+AIYDTMQFVRP+V TICMGLAASMGSFLL  G  TKRLAFPHA
Sbjct:   25 NRLYRERLLFLGQEVDSDISNQLIGLMVYLSIEDDTKEIYLFINSPGGWVIPGVAIYDTMQFVRPEVHTICMGLAASMGSFLLVGGEITKRLAFPHA 121          
BLAST of CX298417 vs. ExPASy Swiss-Prot
Match: CLPP_POPTR (ATP-dependent Clp protease proteolytic subunit OS=Populus trichocarpa GN=clpP PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.093e-42
Identity = 83/97 (85.57%), Postives = 90/97 (92.78%), Query Frame = 3
Query:  198 NRLYRERLLFLGQMVESDISNQLIGIMVYLSIENETKDLYLFINSPGGWVIPGIAIYDTMQFVRPDVQTICMGLAASMGSFLLAAGASTKRLAFPHA 488
            NRLYRERLLFLGQ ++S+ISNQLIG+MVYLS E+E KDLYLFINSPGGWVIPGIAIYDTMQFVRPDVQT+CMGLAASMGSF+L  G  TKRLAFPHA
Sbjct:   25 NRLYRERLLFLGQDIDSEISNQLIGLMVYLSTESEIKDLYLFINSPGGWVIPGIAIYDTMQFVRPDVQTVCMGLAASMGSFILVGGKITKRLAFPHA 121          
BLAST of CX298417 vs. ExPASy Swiss-Prot
Match: CLPP_POPAL (ATP-dependent Clp protease proteolytic subunit OS=Populus alba GN=clpP PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.093e-42
Identity = 83/97 (85.57%), Postives = 90/97 (92.78%), Query Frame = 3
Query:  198 NRLYRERLLFLGQMVESDISNQLIGIMVYLSIENETKDLYLFINSPGGWVIPGIAIYDTMQFVRPDVQTICMGLAASMGSFLLAAGASTKRLAFPHA 488
            NRLYRERLLFLGQ ++S+ISNQLIG+MVYLS E+E KDLYLFINSPGGWVIPGIAIYDTMQFVRPDVQT+CMGLAASMGSF+L  G  TKRLAFPHA
Sbjct:   25 NRLYRERLLFLGQDIDSEISNQLIGLMVYLSTESEIKDLYLFINSPGGWVIPGIAIYDTMQFVRPDVQTVCMGLAASMGSFILVGGKITKRLAFPHA 121          
BLAST of CX298417 vs. ExPASy Swiss-Prot
Match: CLPP_EUCGG (ATP-dependent Clp protease proteolytic subunit OS=Eucalyptus globulus subsp. globulus GN=clpP PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.093e-42
Identity = 83/97 (85.57%), Postives = 90/97 (92.78%), Query Frame = 3
Query:  198 NRLYRERLLFLGQMVESDISNQLIGIMVYLSIENETKDLYLFINSPGGWVIPGIAIYDTMQFVRPDVQTICMGLAASMGSFLLAAGASTKRLAFPHA 488
            NRLYRERLLFLGQ V+S+ISNQLIG+MVYLSIEN+ KDLYLFINSPGGWVIPG+AIYDTMQFV+PDV TICMGLAASMGSF+L  G  TKRLAFPHA
Sbjct:   25 NRLYRERLLFLGQEVDSEISNQLIGLMVYLSIENDNKDLYLFINSPGGWVIPGVAIYDTMQFVQPDVHTICMGLAASMGSFVLVGGEITKRLAFPHA 121          
BLAST of CX298417 vs. ExPASy Swiss-Prot
Match: CLPP_ATRBE (ATP-dependent Clp protease proteolytic subunit OS=Atropa belladonna GN=clpP PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.093e-42
Identity = 83/97 (85.57%), Postives = 90/97 (92.78%), Query Frame = 3
Query:  198 NRLYRERLLFLGQMVESDISNQLIGIMVYLSIENETKDLYLFINSPGGWVIPGIAIYDTMQFVRPDVQTICMGLAASMGSFLLAAGASTKRLAFPHA 488
            NRLYRERLLFLGQ + S+ISNQLIG+MVYLSIE+ETK+LYLFINSPGGWVIPGIAIYDTMQFVRPDV T+CMGLAASMGSF+L  G  TKRLAFPHA
Sbjct:   25 NRLYRERLLFLGQGINSEISNQLIGLMVYLSIEDETKELYLFINSPGGWVIPGIAIYDTMQFVRPDVHTVCMGLAASMGSFILVGGEITKRLAFPHA 121          
The following BLAST results are available for this feature:
BLAST of CX298417 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPP_SOYBN3.756e-4385.86ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_PANGI3.756e-4382.52ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_MORIN6.407e-4383.84ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_LOTJA6.407e-4384.85ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_NANDO8.368e-4386.60ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_EPIVI8.368e-4385.57ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_POPTR1.093e-4285.57ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_POPAL1.093e-4285.57ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_EUCGG1.093e-4285.57ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_ATRBE1.093e-4285.57ATP-dependent Clp protease proteolytic subunit OS=... [more]

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Properties
Property NameValue
Genbank descriptionC06012A03SK RindPdig24 Citrus clementina cDNA clone C06012A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298417 ID=CX298417; Name=CX298417; organism=Citrus clementina; type=EST; length=703bp
GAATATTATAGGTCTAGGAAACCGGCTAAACTCAGCGTTCTTGAAAACCG
GAAGAAAAGCCCCTCGATAGAAGCGAGGAAAAAAGAAAGGAAAGGGGCTA
GGAGCTACACATTGATTCGTTTTTCGCAAGTTTTGTTGAACCGTATGCAT
CAAAAGATGCCTGTACGGCTCCGAAGGGATACTGTTTTATCCTAATCAAC
CGACTTTATCGAGAAAGATTACTTTTTTTAGGTCAAATGGTTGAGAGCGA
TATCTCGAATCAACTTATTGGTATTATGGTATATCTCAGTATAGAGAACG
AGACCAAGGATTTGTATTTATTTATTAACTCTCCTGGCGGATGGGTAATA
CCCGGGATAGCAATTTATGATACTATGCAATTTGTGCGACCCGATGTACA
GACAATATGCATGGGATTGGCCGCCTCCATGGGGTCTTTTCTCCTGGCCG
CCGGAGCAAGTACCAAACGTCTAGCATTCCCTCACGCTTGGCGCCAATGA
GTTTTTTATTTGAGAGAAAAAAGAAGACTATGCCTTCGCCATATGAATTC
TTAATATTAAGTAATAATAGCATGGCACTTCGAATTCGATATGAAAATTG
TTAGTGTTTTTTTTTTTTCAAAATATTTGATTATGTATCGAAGCAGTAGT
ATGAGATAAAGAAGGGGTATTCCGAGTTTATCTTACCTATCGGAGGCCTA
TTG
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