CX298417

Overview
NameCX298417
Unique NameCX298417
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length703
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX298417 vs. ExPASy Swiss-Prot
Match: CLPP_CHAGL (ATP-dependent Clp protease proteolytic subunit OS=Chaetosphaeridium globosum GN=clpP PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 6.422e-35
Identity = 67/99 (67.68%), Postives = 87/99 (87.88%), Query Frame = 3
Query:  192 LINRLYRERLLFLGQMVESDISNQLIGIMVYLSIENETKDLYLFINSPGGWVIPGIAIYDTMQFVRPDVQTICMGLAASMGSFLLAAGASTKRLAFPHA 488
            L NRLYRER+LFLGQ V  +I+NQ+IG+M+YL+ ++++KD+YL+INSPGG V+PGIAIYDTMQFV P+++TICMG+AASMGSF+L  G  TKR+A PHA
Sbjct:   23 LYNRLYRERILFLGQTVNYEIANQIIGLMLYLNGDDKSKDMYLYINSPGGAVVPGIAIYDTMQFVEPEIRTICMGVAASMGSFILTGGEITKRIALPHA 121          
BLAST of CX298417 vs. ExPASy Swiss-Prot
Match: CLPP_STAPU (ATP-dependent Clp protease proteolytic subunit OS=Staurastrum punctulatum GN=clpP PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 8.388e-35
Identity = 69/97 (71.13%), Postives = 84/97 (86.60%), Query Frame = 3
Query:  198 NRLYRERLLFLGQMVESDISNQLIGIMVYLSIENETKDLYLFINSPGGWVIPGIAIYDTMQFVRPDVQTICMGLAASMGSFLLAAGASTKRLAFPHA 488
            NRLYRERLLFLGQ V+ +I+NQLIGIM+YL+ E+E+KD+Y++INSPGG V+ GI++YD MQFV PDV TICMGLAASMGSF+L  G  TKR+A PHA
Sbjct:   25 NRLYRERLLFLGQNVDDEIANQLIGIMIYLNGEDESKDMYMYINSPGGAVLAGISVYDAMQFVVPDVHTICMGLAASMGSFILTGGEITKRIALPHA 121          
BLAST of CX298417 vs. ExPASy Swiss-Prot
Match: CLPP_PSINU (ATP-dependent Clp protease proteolytic subunit OS=Psilotum nudum GN=clpP PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 8.388e-35
Identity = 69/97 (71.13%), Postives = 83/97 (85.57%), Query Frame = 3
Query:  198 NRLYRERLLFLGQMVESDISNQLIGIMVYLSIENETKDLYLFINSPGGWVIPGIAIYDTMQFVRPDVQTICMGLAASMGSFLLAAGASTKRLAFPHA 488
            NRLYRERLLFLGQ V+ +I+NQLIGIM+YL+ E+E +D+Y +INSPGG V+PGI++YD MQFV PDV TICMGLAASMGSF+L  G  TKR+A PHA
Sbjct:   25 NRLYRERLLFLGQQVDDEIANQLIGIMMYLNGEDENRDMYSYINSPGGAVLPGISVYDAMQFVVPDVHTICMGLAASMGSFILTGGEITKRIALPHA 121          
BLAST of CX298417 vs. ExPASy Swiss-Prot
Match: CLPP_ADICA (ATP-dependent Clp protease proteolytic subunit OS=Adiantum capillus-veneris GN=clpP PE=2 SV=2)

HSP 1 Score: 147.132 bits (370), Expect = 8.388e-35
Identity = 68/97 (70.10%), Postives = 84/97 (86.60%), Query Frame = 3
Query:  198 NRLYRERLLFLGQMVESDISNQLIGIMVYLSIENETKDLYLFINSPGGWVIPGIAIYDTMQFVRPDVQTICMGLAASMGSFLLAAGASTKRLAFPHA 488
            NRLYRERLLFLGQ V+ +I+NQLIGIM+YL+ E++ KD+YL++NSPGG V+ GI++YD MQFV PDV TICMGLAASMGSF+LA G  T+R+A PHA
Sbjct:   25 NRLYRERLLFLGQQVDDEIANQLIGIMMYLNSEDQAKDMYLYVNSPGGAVLAGISVYDAMQFVVPDVHTICMGLAASMGSFILAGGEITRRIALPHA 121          
BLAST of CX298417 vs. ExPASy Swiss-Prot
Match: CLPP_ZYGCR (ATP-dependent Clp protease proteolytic subunit OS=Zygnema circumcarinatum GN=clpP PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.440e-34
Identity = 68/97 (70.10%), Postives = 84/97 (86.60%), Query Frame = 3
Query:  198 NRLYRERLLFLGQMVESDISNQLIGIMVYLSIENETKDLYLFINSPGGWVIPGIAIYDTMQFVRPDVQTICMGLAASMGSFLLAAGASTKRLAFPHA 488
            NRLYR+RLLFLGQ V+ +I+NQLIGIM+YL+ EN++KD+Y++INSPGG V+ GI++YD MQFV PDV TICMGLAASMGSF+L  G  +KRLA PHA
Sbjct:   25 NRLYRDRLLFLGQDVDDEIANQLIGIMIYLNGENQSKDMYMYINSPGGAVLAGISVYDAMQFVVPDVHTICMGLAASMGSFILTGGEISKRLALPHA 121          
BLAST of CX298417 vs. ExPASy Swiss-Prot
Match: CLPP_CYCTA (ATP-dependent Clp protease proteolytic subunit OS=Cycas taitungensis GN=clpP PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.582e-33
Identity = 70/97 (72.16%), Postives = 81/97 (83.51%), Query Frame = 3
Query:  198 NRLYRERLLFLGQMVESDISNQLIGIMVYLSIENETKDLYLFINSPGGWVIPGIAIYDTMQFVRPDVQTICMGLAASMGSFLLAAGASTKRLAFPHA 488
            NRLYRERLLF GQ V+ +I+NQLIGIM+YL+ E+E KD+Y +INSPGG VIPGI+IYD MQFV PDV TICMGLAASMGS +L  G  TKR+A PHA
Sbjct:   18 NRLYRERLLFPGQQVDDEIANQLIGIMMYLNGEDENKDIYPYINSPGGAVIPGISIYDAMQFVVPDVHTICMGLAASMGSSVLTGGEITKRIALPHA 114          
BLAST of CX298417 vs. ExPASy Swiss-Prot
Match: CLPP_CHAVU (ATP-dependent Clp protease proteolytic subunit OS=Chara vulgaris GN=clpP PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 6.011e-33
Identity = 64/99 (64.65%), Postives = 85/99 (85.86%), Query Frame = 3
Query:  192 LINRLYRERLLFLGQMVESDISNQLIGIMVYLSIENETKDLYLFINSPGGWVIPGIAIYDTMQFVRPDVQTICMGLAASMGSFLLAAGASTKRLAFPHA 488
            + NRLYRERLLFLGQ V+ +I+NQLIGIM+YL+ E+++K+++++INSPGG V+ GIA++D MQ+V PDV TICMG+AASMGSF+L  G  TKR+A PHA
Sbjct:   23 IYNRLYRERLLFLGQRVDDEIANQLIGIMMYLNGEDDSKEMFMYINSPGGSVVAGIAVFDAMQYVGPDVTTICMGMAASMGSFILMGGEMTKRIALPHA 121          
BLAST of CX298417 vs. ExPASy Swiss-Prot
Match: CLPP_HUPLU (ATP-dependent Clp protease proteolytic subunit OS=Huperzia lucidula GN=clpP PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.983e-32
Identity = 65/97 (67.01%), Postives = 83/97 (85.57%), Query Frame = 3
Query:  198 NRLYRERLLFLGQMVESDISNQLIGIMVYLSIENETKDLYLFINSPGGWVIPGIAIYDTMQFVRPDVQTICMGLAASMGSFLLAAGASTKRLAFPHA 488
            NRL+RERLLFLGQ V+ +++NQLI IM+Y + E++++D+YL++NSPGG V  GI+IYD MQFV PDVQTIC+GLAASMGSF+LA G  TKR+A PHA
Sbjct:   25 NRLFRERLLFLGQQVDDELANQLICIMIYPNGEDDSRDMYLYVNSPGGAVFAGISIYDAMQFVVPDVQTICIGLAASMGSFVLAGGEITKRIALPHA 121          
BLAST of CX298417 vs. ExPASy Swiss-Prot
Match: CLPP_SORBI (ATP-dependent Clp protease proteolytic subunit OS=Sorghum bicolor GN=clpP PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.481e-31
Identity = 62/99 (62.63%), Postives = 79/99 (79.80%), Query Frame = 3
Query:  192 LINRLYRERLLFLGQMVESDISNQLIGIMVYLSIENETKDLYLFINSPGGWVIPGIAIYDTMQFVRPDVQTICMGLAASMGSFLLAAGASTKRLAFPHA 488
            L N +YRER LFLGQ +  +I+N + G+MVYLSIE+   D++LFINSPGGW+I G+AI+DTMQ V PD+ TIC+G+AASM SF+L  G  TKR+AFPHA
Sbjct:   23 LYNVMYRERTLFLGQEIRCEITNHITGLMVYLSIEDGNSDIFLFINSPGGWLISGMAIFDTMQTVTPDIYTICLGIAASMASFILLGGEPTKRIAFPHA 121          
BLAST of CX298417 vs. ExPASy Swiss-Prot
Match: CLPP_SACOF (ATP-dependent Clp protease proteolytic subunit OS=Saccharum officinarum GN=clpP PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.481e-31
Identity = 62/99 (62.63%), Postives = 79/99 (79.80%), Query Frame = 3
Query:  192 LINRLYRERLLFLGQMVESDISNQLIGIMVYLSIENETKDLYLFINSPGGWVIPGIAIYDTMQFVRPDVQTICMGLAASMGSFLLAAGASTKRLAFPHA 488
            L N +YRER LFLGQ +  +I+N + G+MVYLSIE+   D++LFINSPGGW+I G+AI+DTMQ V PD+ TIC+G+AASM SF+L  G  TKR+AFPHA
Sbjct:   23 LYNVMYRERTLFLGQEIRCEITNHITGLMVYLSIEDGNSDIFLFINSPGGWLISGMAIFDTMQTVTPDIYTICLGIAASMASFILLGGEPTKRIAFPHA 121          
The following BLAST results are available for this feature:
BLAST of CX298417 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPP_CHAGL6.422e-3567.68ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_STAPU8.388e-3571.13ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_PSINU8.388e-3571.13ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_ADICA8.388e-3570.10ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_ZYGCR2.440e-3470.10ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_CYCTA1.582e-3372.16ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_CHAVU6.011e-3364.65ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_HUPLU2.983e-3267.01ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_SORBI1.481e-3162.63ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_SACOF1.481e-3162.63ATP-dependent Clp protease proteolytic subunit OS=... [more]

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Properties
Property NameValue
Genbank descriptionC06012A03SK RindPdig24 Citrus clementina cDNA clone C06012A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298417 ID=CX298417; Name=CX298417; organism=Citrus clementina; type=EST; length=703bp
GAATATTATAGGTCTAGGAAACCGGCTAAACTCAGCGTTCTTGAAAACCG
GAAGAAAAGCCCCTCGATAGAAGCGAGGAAAAAAGAAAGGAAAGGGGCTA
GGAGCTACACATTGATTCGTTTTTCGCAAGTTTTGTTGAACCGTATGCAT
CAAAAGATGCCTGTACGGCTCCGAAGGGATACTGTTTTATCCTAATCAAC
CGACTTTATCGAGAAAGATTACTTTTTTTAGGTCAAATGGTTGAGAGCGA
TATCTCGAATCAACTTATTGGTATTATGGTATATCTCAGTATAGAGAACG
AGACCAAGGATTTGTATTTATTTATTAACTCTCCTGGCGGATGGGTAATA
CCCGGGATAGCAATTTATGATACTATGCAATTTGTGCGACCCGATGTACA
GACAATATGCATGGGATTGGCCGCCTCCATGGGGTCTTTTCTCCTGGCCG
CCGGAGCAAGTACCAAACGTCTAGCATTCCCTCACGCTTGGCGCCAATGA
GTTTTTTATTTGAGAGAAAAAAGAAGACTATGCCTTCGCCATATGAATTC
TTAATATTAAGTAATAATAGCATGGCACTTCGAATTCGATATGAAAATTG
TTAGTGTTTTTTTTTTTTCAAAATATTTGATTATGTATCGAAGCAGTAGT
ATGAGATAAAGAAGGGGTATTCCGAGTTTATCTTACCTATCGGAGGCCTA
TTG
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