CX298420

Overview
NameCX298420
Unique NameCX298420
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length727
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX298420 vs. ExPASy Swiss-Prot
Match: G3O22_WHEAT (Gibberellin 3-beta-dioxygenase 2-2 OS=Triticum aestivum GN=GA3ox2-2 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.205e-17
Identity = 64/208 (30.77%), Postives = 101/208 (48.56%), Query Frame = 2
Query:  125 ACREWGFFQLVNHGVSLALVDKVKKEIQEFFNLSMEEKKKYWQYPGEVEGFGQAFVVSEEQRLDWGDLFFMTTLPVHLRKP--HLFPKLPPSLRD---TLEVYSTEVNALAMNLISRMAKVLHIKDEEV------REFFENGLQSMRMNYYPPCPQPGKVMGLTPHSDSIALTILLQINEAEGLQIKKDG--KWFPVRPLPNAFIVTL 709
            A ++WG F L  HGV L L+ +V+  I   F L   EK +  + PG+  G+G   + S   +  W + +  T  P +LR     L+PK     R     +E +  E+ ALA  L+      L +  E+V      ++  E    +M +N+YP CP P + +GL  H+DS   T +LQ +   GLQ+ + G  +W  V  +P A +V +
Sbjct:   66 AAQDWGAFLLEGHGVPLELLARVEAAIAGMFALPASEKMRAVRRPGDSCGYGSPPISSFFSKCMWSEGY--TFSPANLRSDLRKLWPKAGHDYRHFCAVMEEFHREMRALADKLLELFLVALGLTGEQVAAVESEQKIAETMTATMHLNWYPKCPDPKRALGLIAHTDSGFFTFVLQ-SLVPGLQLFRHGPDRWVTVPAVPGAMVVNV 270          
BLAST of CX298420 vs. ExPASy Swiss-Prot
Match: IDS3_HORVU (2'-deoxymugineic-acid 2'-dioxygenase OS=Hordeum vulgare GN=IDS3 PE=1 SV=3)

HSP 1 Score: 88.5817 bits (218), Expect = 3.761e-17
Identity = 60/224 (26.79%), Postives = 100/224 (44.64%), Query Frame = 2
Query:   44 ILKFPVIDMQXXXXXXXXXXXXANLDFACREWGFFQLVNHGVSLALVDKVKKEIQEFFNLSMEEKKKYWQYPGEVEG---FGQAFVVSEEQRLDWGD-LFFMTTLPVHLRKPHLFPKLPPSLRDTLEVYSTEVNALAMNLISRMAKVLHIKDEEVREFFENGLQSMRMNYYPPCPQPGKVMGLTPHSDSIALTILLQINEAEGLQIKKDGKWFPVRPLPNAFIV 703
            ++  P+ID+             A      +E GFFQ+VNHGVS  ++  ++   ++FF+L   +K   +            G  +    E+   W D L      PV     + +P  P  LRD +E ++++   +   L+  + + + I+ +        G   + +N+YP CP P K +G  PH D   +T+LL      GL++   G W  V P PNAF+V
Sbjct:   32 VVSLPIIDLSCGRDEVRRSILEAG-----KELGFFQVVNHGVSKQVMRDMEGMCEQFFHLPAADKASLYSEERHKPNRLFSGATYDTGGEKY--WRDCLRLACPFPVD-DSINEWPDTPKGLRDVIEKFTSQTRDVGKELLRLLCEGMGIQADYFEGDLSGGNVILNINHYPSCPNPDKALGQPPHCDRNLITLLLP-GAVNGLEVSYKGDWIKVDPAPNAFVV 246          
BLAST of CX298420 vs. ExPASy Swiss-Prot
Match: G3OX4_ARATH (Gibberellin 3-beta-dioxygenase 4 OS=Arabidopsis thaliana GN=At1g80330 PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.761e-17
Identity = 56/203 (27.59%), Postives = 97/203 (47.78%), Query Frame = 2
Query:  125 ACREWGFFQLVNHGVSLALVDKVKKEIQEFFNLSMEEKKKYWQYPGEVEGFGQAFVVSEEQRLDWGDLFFMTTLPVHLRKPHLFPKLPPSLRDTLEVYSTEVNALAMNLISRMAKVLHIKDEEV-------REFFENGLQSMRMNYYPPCPQPGKVMGLTPHSDSIALTILLQINEAEGLQI-KKDGKWFPVRPLPNAFIVTL 709
            A + WG FQ+ NHG+S  L+D ++   +  F++  E K +       V G+G+  +    ++  W + F +           L+P         ++ Y  E+  LA  L+  +   L +  E++       +   + G  ++R+N+YP CP+P + MGL  H+DS  LTIL Q N   GLQ+ +++  W  V P P   +V +
Sbjct:   66 ASKTWGAFQIANHGISQKLLDDIESLSKTLFDMPSERKLEAASSDKGVSGYGEPRISPFFEKKMWSEGFTIADDSYRNHFNTLWPHDHTKYCGIIQEYVDEMEKLASRLLYCILGSLGVTVEDIEWAHKLEKSGSKVGRGAIRLNHYPVCPEPERAMGLAAHTDSTILTILHQSNTG-GLQVFREESGWVTVEPAPGVLVVNI 267          
BLAST of CX298420 vs. ExPASy Swiss-Prot
Match: LDOX_MAIZE (Leucoanthocyanidin dioxygenase OS=Zea mays GN=A2 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.094e-16
Identity = 59/208 (28.37%), Postives = 94/208 (45.19%), Query Frame = 2
Query:  125 ACREWGFFQLVNHGVSLALVDKVKKEIQEFFNLSMEEKKKYWQYP--GEVEGFGQAFVVSEEQRLDWGDLFFMTTLPVHLRKPHLFPKLPPSL--------RDTLEVYSTEVNALAMNLISR-----MAKVLHIKDEEVREFFENGLQSMRMNYYPPCPQPGKVMGLTPHSDSIALTILLQINEAEGLQIKKDGKWFPVRPLPNAFIV 703
            A  +WG   +  HG+   L+D+++     FF L +++K+ Y   P  G ++G+G     +   + +W D  F    P  L    L+P  PP          R T ++ ST +  L+M L+       + K L           +  LQ +++NYYP CPQP   +G+  H+D  AL+ +L  N   GLQ+    +W   R  P   IV
Sbjct:   86 AAADWGVMHIAGHGIPAELMDRLRAAGTAFFALPVQDKEAYANDPAAGRLQGYGSRLATNTCGQREWEDYLFHLVHPDGLADHALWPAYPPDYIAATRDFGRRTRDLASTLLAILSMGLLGTDRGDALEKALTTTTTRTAADDDLLLQ-LKINYYPRCPQPELAVGVEAHTDVSALSFILH-NGVPGLQVLHGARWVTARHEPGTIIV 291          
BLAST of CX298420 vs. ExPASy Swiss-Prot
Match: G3O21_WHEAT (Gibberellin 3-beta-dioxygenase 2-1 OS=Triticum aestivum GN=GA3ox2-1 PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.094e-16
Identity = 64/208 (30.77%), Postives = 99/208 (47.60%), Query Frame = 2
Query:  125 ACREWGFFQLVNHGVSLALVDKVKKEIQEFFNLSMEEKKKYWQYPGEVEGFGQAFVVSEEQRLDWGDLFFMTTLPVHLRKP--HLFPKLPPSLRD---TLEVYSTEVNALAMNLISRMAKVLHIKDEEV------REFFENGLQSMRMNYYPPCPQPGKVMGLTPHSDSIALTILLQINEAEGLQIKKDG--KWFPVRPLPNAFIVTL 709
            A ++WG F L  HGV L L+  V+  I   F L   EK +  + PG+  G+G   + S   +  W + +  T  P +LR     L+PK     R     +E +  E+ ALA  L+      L +  E+V       +  E    +M +N+YP CP P + +GL  H+DS   T +LQ +   GLQ+ + G  +W  V  +P A +V +
Sbjct:   66 AAQDWGAFLLEGHGVPLELLAGVEAAIGGMFALPASEKMRAVRRPGDSCGYGSPPISSFFSKCMWSEGY--TFSPANLRSDLRKLWPKAGHDYRHFCAVMEEFHREMRALADKLLELFLVALGLTGEQVAAVESEHKIAETMTATMHLNWYPKCPDPKRALGLIAHTDSGFFTFVLQ-SLVPGLQLFRHGPDRWVTVPAVPGAMVVNV 270          
BLAST of CX298420 vs. ExPASy Swiss-Prot
Match: ACCO_DENCR (1-aminocyclopropane-1-carboxylate oxidase OS=Dendrobium crumenatum GN=ACO PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.866e-16
Identity = 53/204 (25.98%), Postives = 99/204 (48.53%), Query Frame = 2
Query:  125 ACREWGFFQLVNHGVSLALVDKV----KKEIQEFFNLSMEEKKKYWQYPGEVEGFGQAFVVSEEQRLDWGDLFFMTTLPVHLRKPHLFPKLPPSLRDTLEVYSTEVNALAMNLISRMAKVLHIKDEEVREFFENGLQSM-----RMNYYPPCPQPGKVMGLTPHSDSIALTILLQINEAEGLQIKKDGKWFPVRPLPNAFIVTL 709
            AC  WGFF+L+NHG+S    ++     K+  +E +    E++ K  ++  +    G+     +   LDW   FF+  LP         P L      T++ ++  +  LA  L+  + + L ++   ++  F  G   +     +++ YPPCP+P  + GL  H+D+  + +L Q +   GLQ+ KD +W  V P+ ++ +V +
Sbjct:   19 ACENWGFFELLNHGISHEPNEQSETVNKEHYREHYRRFREQRFK--EFAAKTLDSGENV---DGDNLDWESTFFLRHLPTS--NISQVPDLDEDCGSTMKEFALGLEKLAERLLDLLCENLGLEKGYLKRVFCGGSDGLPTFGTKVSNYPPCPKPELIKGLRAHTDAGGIILLFQDDTVSGLQLLKDEEWIDVPPMRHSIVVNI 215          
BLAST of CX298420 vs. ExPASy Swiss-Prot
Match: DV4H_CATRO (Deacetoxyvindoline 4-hydroxylase OS=Catharanthus roseus GN=D4H PE=1 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 9.263e-16
Identity = 59/201 (29.35%), Postives = 98/201 (48.76%), Query Frame = 2
Query:  125 ACREWGFFQLVNHGVSLALVDKVKKEIQEFFNLSMEEKKKYWQYPGEVEGFGQAFVVSEEQRL------DWGDLFFMTTLPVHLRKPHLFPKLPPSLRDTLEVYSTEVNALAMNLISRMAKVLHIKDEEVREFFENGLQSMRMNYYPPCPQPGKVMGLTPHSDSIALTILLQINEAEGLQIKKDGKWFPVRPLPNAFIVTL 709
            A  ++GFFQ+VNHG+   ++DK+   +++F     + K++Y+      + F + F+ S    L      +W D      +  +   P  FP +    RD L  YS  V  L + L   +++ L +K   + E        +  +YYP CPQP    G + HSDS  LTIL+Q ++  GLQI  + +W  V  +P A ++ +
Sbjct:  116 ASEKYGFFQIVNHGIPQDVMDKMVDGVRKFHEQDDQIKRQYYSR----DRFNKNFLYSSNYVLIPGIACNWRDTM-ECIMNSNQPDPQEFPDV---CRDILMKYSNYVRNLGLILFELLSEALGLKPNHLEEMDCAEGLILLGHYYPACPQPELTFGTSKHSDSGFLTILMQ-DQIGGLQILLENQWIDVPFIPGALVINI 307          
BLAST of CX298420 vs. ExPASy Swiss-Prot
Match: G2OX_PHACN (Gibberellin 2-beta-dioxygenase OS=Phaseolus coccineus GN=GA2OX1 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.064e-15
Identity = 60/205 (29.27%), Postives = 96/205 (46.83%), Query Frame = 2
Query:  125 ACREWGFFQLVNHGVSLALVDKVKKEIQEFFNLSMEEKKKYWQYPGEVEGFGQAFVVSEEQRLDWGDLFFMTTLP--VHLRKPHLFPKLPPSLRDTLEVYSTEVNALAMNLISRMAKVLHIKDEEVREFF---ENGLQSMRMNYYPPCPQ----PGKVMGLTPHSDSIALTILLQINEAEGLQI-KKDGKWFPVRPLPNAFIVTL 709
            ACR++GFF+LVNHGV L L+  ++ E   FF  S  EK +    P +  G+G    +     + W +   + T P  +  +   +F + P   R  +E Y T V  +   ++  MA+ L I+           E      R+N+YPPCP+       ++G   H+D   +++ L+ N   GLQI   DG W  V P   +F + +
Sbjct:   44 ACRDFGFFKLVNHGVPLELMANLENEALRFFKKSQSEKDR--AGPPDPFGYGSK-RIGPNGDVGWVEYLLLNTNPDVISPKSLCIFRENPHHFRAVVENYITAVKNMCYAVLELMAEGLGIRQRNTLSRLLKDEKSDSCFRLNHYPPCPEVQALNRNLVGFGEHTDPQIISV-LRSNSTSGLQICLTDGTWVSVPPDQTSFFINV 244          
BLAST of CX298420 vs. ExPASy Swiss-Prot
Match: G2OX7_ARATH (Gibberellin 2-beta-dioxygenase 7 OS=Arabidopsis thaliana GN=GA2OX7 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.024e-14
Identity = 61/233 (26.18%), Postives = 101/233 (43.35%), Query Frame = 2
Query:   47 LKFPVIDMQXXXXXXXXXXXXA--NLDFACREWGFFQLVNHGVSLALVDKVKKEIQEFFNLSMEEKKKYWQYPGEVEGFGQAFVVSEEQRLDWGDLFFMTTLPVHLRKPHLFPKLPP----------SLRDTLEVYSTEVNALAMNLISRMAKVLHIKDEEVREFFENGLQSMRMNYYPPCPQPGKVMGLTPHSDSIALTILLQINEAEGLQIKKDGKWFPVRPLPNAFIVTL 709
            +K PVID+                 +  A +EWGFFQ+VNHG+            ++ F + + E+KK +  P  V+   + F    +    WG+     T P        F  +            +LR  +E Y  E+  +A  +   + K +++  E     FE     +R+N Y P     +V GL PH+D+  LTIL Q ++  GL+++ +G+W  V+P   A  V +
Sbjct:   38 IKLPVIDLSHLTSGEEVKRKRCVKQMVAAAKEWGFFQIVNHGIP-----------KDVFEMMLLEEKKLFDQPFSVK-VRERFSDLSKNSYRWGNP--SATSPAQYSVSEAFHIILSEVSRISDDRNNLRTIVETYVQEIARVAQMICEILGKQVNVSSEYFENIFELENSFLRLNKYHPSVFGSEVFGLVPHTDTSFLTILSQ-DQIGGLELENNGQWISVKPCLEALTVNI 255          
BLAST of CX298420 vs. ExPASy Swiss-Prot
Match: G2OX1_PEA (Gibberellin 2-beta-dioxygenase 1 OS=Pisum sativum GN=GA2OX1 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.132e-13
Identity = 56/203 (27.59%), Postives = 98/203 (48.28%), Query Frame = 2
Query:  125 ACREWGFFQLVNHGVSLALVDKVKKEIQEFFNLSMEEKKKYWQYPGEVEGFGQAFVVSEEQRLDWGDLFFMTTLPVHLRKPHLFPKLPPSLRDTLEVYSTEVNALAMNLISRMAKVLHIKDEEVREFFENGLQS---MRMNYYPPCPQPG----KVMGLTPHSDSIALTILLQINEAEGLQIK-KDGKWFPVRPLPNAFIVTL 709
            AC ++GFF+++NHG+ L  + +++ E  +FF+L   EK+K    P    G+G    +     + W +   +TT   H     L+ +     R  L+ Y   +  +A  ++  MA+ L I+ + V        QS    R+N+YP CP+       ++G   H+D   ++I L+ N   G QI  +DG W  V P  ++F + +
Sbjct:   44 ACEDFGFFKVINHGIPLDAISQLESEAFKFFSLPQTEKEK--AGPANPFGYGNK-RIGLNGDIGWIEYLLLTTNQDH--NFSLYGEDIDKFRGLLKDYKCAMRNMACEILDLMAEGLKIQPKNVFSKLVMDKQSDCLFRVNHYPACPELAINGENLIGFGEHTDPQIISI-LRSNNTSGFQISLRDGSWISVPPDHSSFFINV 240          
The following BLAST results are available for this feature:
BLAST of CX298420 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
G3O22_WHEAT2.205e-1730.77Gibberellin 3-beta-dioxygenase 2-2 OS=Triticum aes... [more]
IDS3_HORVU3.761e-1726.792'-deoxymugineic-acid 2'-dioxygenase OS=Hordeum vu... [more]
G3OX4_ARATH3.761e-1727.59Gibberellin 3-beta-dioxygenase 4 OS=Arabidopsis th... [more]
LDOX_MAIZE1.094e-1628.37Leucoanthocyanidin dioxygenase OS=Zea mays GN=A2 P... [more]
G3O21_WHEAT1.094e-1630.77Gibberellin 3-beta-dioxygenase 2-1 OS=Triticum aes... [more]
ACCO_DENCR1.866e-1625.981-aminocyclopropane-1-carboxylate oxidase OS=Dendr... [more]
DV4H_CATRO9.263e-1629.35Deacetoxyvindoline 4-hydroxylase OS=Catharanthus r... [more]
G2OX_PHACN2.064e-1529.27Gibberellin 2-beta-dioxygenase OS=Phaseolus coccin... [more]
G2OX7_ARATH1.024e-1426.18Gibberellin 2-beta-dioxygenase 7 OS=Arabidopsis th... [more]
G2OX1_PEA1.132e-1327.59Gibberellin 2-beta-dioxygenase 1 OS=Pisum sativum ... [more]

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Properties
Property NameValue
Genbank descriptionC06012A06SK RindPdig24 Citrus clementina cDNA clone C06012A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298420 ID=CX298420; Name=CX298420; organism=Citrus clementina; type=EST; length=727bp
ACGTCCTGAGCAAGATGCACCTGTCATTTCTGACAATACTTTGATCTTAA
AGTTTCCAGTTATTGACATGCAGAGCTTGCTTTCTGAAGAATCAGTGGAT
TCTGAATTGGCCAACCTTGACTTCGCTTGCAGAGAATGGGGTTTTTTCCA
GTTGGTCAATCATGGAGTGAGTTTGGCGTTAGTAGACAAAGTGAAGAAAG
AGATACAGGAATTCTTCAATCTCAGCATGGAAGAGAAGAAAAAATATTGG
CAGTATCCCGGAGAAGTAGAAGGATTTGGACAAGCCTTTGTTGTATCTGA
GGAACAAAGGCTTGACTGGGGAGACCTGTTCTTCATGACCACTCTTCCTG
TCCATCTGAGGAAACCCCACTTGTTTCCTAAGCTCCCTCCTTCTCTCAGG
GATACGTTGGAAGTTTACTCAACGGAAGTAAATGCTCTAGCGATGAATTT
AATATCGAGAATGGCAAAAGTCTTACATATCAAGGATGAGGAAGTGAGAG
AATTCTTCGAAAATGGATTGCAATCAATGAGGATGAACTATTATCCTCCA
TGTCCTCAACCGGGGAAAGTTATGGGCCTTACACCCCATTCTGATAGCAT
TGCACTTACCATTCTCCTACAAATCAATGAAGCTGAAGGTCTCCAGATTA
AGAAGGATGGAAAGTGGTTTCCTGTTCGGCCGCTGCCAAATGCTTTTATT
GTCACATTGGAGACATGCTGGAGGTAA
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