CX298447

Overview
NameCX298447
Unique NameCX298447
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length470
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX298447 vs. ExPASy Swiss-Prot
Match: RS3A_CHLRE (40S ribosomal protein S3a OS=Chlamydomonas reinhardtii GN=CHLREDRAFT_168484 PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 2.604e-30
Identity = 62/89 (69.66%), Postives = 74/89 (83.15%), Query Frame = 1
Query:    1 SQIRQSRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKVDRPA 267
            +QIRQ R+KM EI+  +A SCDLK LV KFI E IG++IEK+   IYPLQN FIRKVK+LKAPKFD+ KLMEVHGDYSE+VG K++RPA
Sbjct:  159 AQIRQIRKKMMEIITREATSCDLKELVAKFIPESIGKDIEKSCQGIYPLQNTFIRKVKVLKAPKFDITKLMEVHGDYSEEVGAKIERPA 247          
BLAST of CX298447 vs. ExPASy Swiss-Prot
Match: RS3A2_VITVI (40S ribosomal protein S3a-2 OS=Vitis vinifera GN=GSVIVT00031140001 PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 6.413e-29
Identity = 65/72 (90.28%), Postives = 66/72 (91.67%), Query Frame = 1
Query:    1 SQIRQSRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLME 216
            SQIRQ RRKMREIM  QAASCDLK LV KFI E+IGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLME
Sbjct:  159 SQIRQIRRKMREIMTTQAASCDLKELVRKFIPEMIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLME 230          
BLAST of CX298447 vs. ExPASy Swiss-Prot
Match: RS3A_LENED (40S ribosomal protein S1 OS=Lentinula edodes GN=RPS1 PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 9.261e-28
Identity = 56/92 (60.87%), Postives = 74/92 (80.43%), Query Frame = 1
Query:    1 SQIRQSRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKVDRPADEP 276
            SQ+R+ R+KM EIM  +A +CDLK LV+KF+ E IGREIEKA+ SIYPLQNV++RK KILKAPKFD+ KLME+HG+ +++ G K+ +   EP
Sbjct:  159 SQVREIRKKMFEIMTREATNCDLKELVQKFVPEAIGREIEKASRSIYPLQNVYVRKAKILKAPKFDVSKLMELHGESTDETGTKIAKDFKEP 250          
BLAST of CX298447 vs. ExPASy Swiss-Prot
Match: RS3A_POSPM (40S ribosomal protein S1 OS=Postia placenta (strain ATCC 44394 / Madison 698-R) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 2.695e-27
Identity = 58/92 (63.04%), Postives = 72/92 (78.26%), Query Frame = 1
Query:    1 SQIRQSRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKVDRPADEP 276
            SQIRQ R+KM EIM  +A+SCDLK LV+KFI E IGREIEKA   IYPLQNVF+ K KILKAPKFD+ KL+E+HG+ +++ G +V +   EP
Sbjct:  159 SQIRQIRQKMFEIMTREASSCDLKELVQKFIPEAIGREIEKAARGIYPLQNVFVHKAKILKAPKFDMSKLLELHGESTDETGTRVVKDFKEP 250          
BLAST of CX298447 vs. ExPASy Swiss-Prot
Match: RS3A_OSTLU (40S ribosomal protein S3a OS=Ostreococcus lucimarinus (strain CCE9901) GN=OSTLU_28528 PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 2.695e-27
Identity = 64/96 (66.67%), Postives = 74/96 (77.08%), Query Frame = 1
Query:    1 SQIRQSRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKVDRPADEPMPE 285
            +QIR+ R KM EI+  +  +CDLK LV KFI EVIG+EIEK+ + IYPLQNV+IRKVKILKAPKFDL KLMEVHGDYS E VG  V RP +E   E
Sbjct:  159 AQIRKIRAKMVEIITRECTTCDLKELVLKFIPEVIGKEIEKSCAGIYPLQNVYIRKVKILKAPKFDLTKLMEVHGDYSGEAVGEAVARPVEEKAEE 254          
BLAST of CX298447 vs. ExPASy Swiss-Prot
Match: RS3A_LACBS (40S ribosomal protein S1 OS=Laccaria bicolor (strain S238N-H82) GN=RPS1 PE=3 SV=2)

HSP 1 Score: 120.553 bits (301), Expect = 3.519e-27
Identity = 54/92 (58.70%), Postives = 73/92 (79.35%), Query Frame = 1
Query:    1 SQIRQSRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKVDRPADEP 276
            SQ+R+ R+KM EIM  +A +CDLK LV+KF+ E IGREIEKA  SIYPLQNV++RK KILK+PKFD+ KL+E+HGD +++ G ++ +   EP
Sbjct:  159 SQVREIRKKMFEIMTREATNCDLKELVQKFVPEAIGREIEKAARSIYPLQNVYVRKAKILKSPKFDMSKLLELHGDSTDETGTRIAKDFKEP 250          
BLAST of CX298447 vs. ExPASy Swiss-Prot
Match: RS3A_COPC7 (40S ribosomal protein S1 OS=Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC 9003) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 3.519e-27
Identity = 56/92 (60.87%), Postives = 74/92 (80.43%), Query Frame = 1
Query:    1 SQIRQSRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKVDRPADEP 276
            +Q+R+ R+KM EI+  +A SCDLK LV+KF+ E IGREIEKA+ SIYPLQNV+IRK KILKAPKFD+ KL+E+HGD +++ G +V +   EP
Sbjct:  159 AQVRELRKKMFEIITREATSCDLKELVQKFVPEAIGREIEKASRSIYPLQNVYIRKAKILKAPKFDVSKLLELHGDSTDESGTRVTKDFKEP 250          
BLAST of CX298447 vs. ExPASy Swiss-Prot
Match: RS3A_TORRU (40S ribosomal protein S3a OS=Tortula ruralis GN=RPS3A PE=2 SV=3)

HSP 1 Score: 115.931 bits (289), Expect = 8.668e-26
Identity = 59/80 (73.75%), Postives = 68/80 (85.00%), Query Frame = 1
Query:   19 RRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSS-IYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKV 255
            RRKMREIMV +A +CDLK LV KFI EVIG+EI++  S  IYPLQ+ FIRKVKILKAPKFDL KLMEVHGDY+E+VG K+
Sbjct:  162 RRKMREIMVKEAQTCDLKELVAKFIPEVIGKEIDEWRSQGIYPLQSTFIRKVKILKAPKFDLMKLMEVHGDYNEEVGAKI 241          
BLAST of CX298447 vs. ExPASy Swiss-Prot
Match: RS3A_ASPCL (40S ribosomal protein S1 OS=Aspergillus clavatus GN=rps1 PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 1.252e-24
Identity = 60/97 (61.86%), Postives = 71/97 (73.20%), Query Frame = 1
Query:    1 SQIRQSRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD-YSEDVGVKVDRPADEPMPEA 288
            SQIR  R+KM EIM  +AASC L  L  K I EVIGREIEKAT  IYPLQNV IRKVK+LKAPKFDLG L+ +HG+  ++D G KV+R   E + E+
Sbjct:  159 SQIRAIRKKMTEIMQREAASCSLAQLTHKLIPEVIGREIEKATQGIYPLQNVHIRKVKLLKAPKFDLGALLNLHGESTTDDKGQKVEREFKEQVLES 255          
BLAST of CX298447 vs. ExPASy Swiss-Prot
Match: RS3A_ASPOR (40S ribosomal protein S1 OS=Aspergillus oryzae GN=rps1 PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 2.135e-24
Identity = 60/97 (61.86%), Postives = 71/97 (73.20%), Query Frame = 1
Query:    1 SQIRQSRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD-YSEDVGVKVDRPADEPMPEA 288
            SQIR  R+KM EIM  +AASC L  L  K I EVIGREIEKAT  IYPLQNV IRKVK+LKAPKFDLG L+ +HG+  ++D G KV+R   E + E+
Sbjct:  159 SQIRAIRKKMTEIMQREAASCTLSQLTTKLIPEVIGREIEKATQGIYPLQNVHIRKVKLLKAPKFDLGALLNLHGESTTDDKGHKVEREFKEQVLES 255          
The following BLAST results are available for this feature:
BLAST of CX298447 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 147
Match NameE-valueIdentityDescription
RS3A_CHLRE2.604e-3069.6640S ribosomal protein S3a OS=Chlamydomonas reinhar... [more]
RS3A2_VITVI6.413e-2990.2840S ribosomal protein S3a-2 OS=Vitis vinifera GN=G... [more]
RS3A_LENED9.261e-2860.8740S ribosomal protein S1 OS=Lentinula edodes GN=RP... [more]
RS3A_POSPM2.695e-2763.0440S ribosomal protein S1 OS=Postia placenta (strai... [more]
RS3A_OSTLU2.695e-2766.6740S ribosomal protein S3a OS=Ostreococcus lucimari... [more]
RS3A_LACBS3.519e-2758.7040S ribosomal protein S1 OS=Laccaria bicolor (stra... [more]
RS3A_COPC73.519e-2760.8740S ribosomal protein S1 OS=Coprinopsis cinerea (s... [more]
RS3A_TORRU8.668e-2673.7540S ribosomal protein S3a OS=Tortula ruralis GN=RP... [more]
RS3A_ASPCL1.252e-2461.8640S ribosomal protein S1 OS=Aspergillus clavatus G... [more]
RS3A_ASPOR2.135e-2461.8640S ribosomal protein S1 OS=Aspergillus oryzae GN=... [more]

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Properties
Property NameValue
Genbank descriptionC06012C09SK RindPdig24 Citrus clementina cDNA clone C06012C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298447 ID=CX298447; Name=CX298447; organism=Citrus clementina; type=EST; length=470bp
AGCCAGATTAGACAGTCTCGCCGCAAGATGAGGGAGATCATGGTTGCTCA
GGCAGCATCTTGTGATCTTAAGAGCTTGGTCGAAAAGTTCATTGCTGAAG
TGATTGGAAGAGAGATTGAGAAGGCAACGTCAAGCATATACCCCTTACAA
AATGTGTTCATTCGCAAAGTGAAGATCCTGAAAGCTCCCAAGTTTGATCT
TGGAAAATTGATGGAGGTTCACGGTGATTACTCGGAAGATGTTGGTGTGA
AGGTGGATAGGCCAGCTGATGAGCCCATGCCTGAAGCACCAACTGAAGTG
ATTGGAGCTTGAACGTGAATGAAGAAATTTTTCTAGTTTTGTTTTTCACT
ACTATTCTGATCTGGGCAGTTTTGTTTGTTATGAATTCATCATATATGAA
TGTTTCAAGTTGTTTGCAGATTTTAAATATTCTAAAACCNAANAAAAAAA
AAAAAAAAAAAAAAAAAAAA
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