CX298447

Overview
NameCX298447
Unique NameCX298447
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length470
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX298447 vs. ExPASy Swiss-Prot
Match: RS3A_EMENI (40S ribosomal protein S1 OS=Emericella nidulans GN=rps1 PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 2.361e-23
Identity = 57/97 (58.76%), Postives = 71/97 (73.20%), Query Frame = 1
Query:    1 SQIRQSRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD-YSEDVGVKVDRPADEPMPEA 288
            SQIR  R+KM EIM  +A+SC L  L  K I EVIGREIEKAT  IYPLQ+V IRKVK+LK+PKFDLG L+ +HG+  ++D G KV+R   E + E+
Sbjct:  159 SQIRAIRKKMTEIMQREASSCSLAQLTSKLIPEVIGREIEKATQGIYPLQHVHIRKVKLLKSPKFDLGALLNLHGESTTDDKGQKVEREFKEQVLES 255          
BLAST of CX298447 vs. ExPASy Swiss-Prot
Match: RS3A_TALSN (40S ribosomal protein S1 OS=Talaromyces stipitatus (strain ATCC 10500 / CBS 375.48 / QM 6759 / NRRL 1006) GN=rps1 PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 3.083e-23
Identity = 57/97 (58.76%), Postives = 71/97 (73.20%), Query Frame = 1
Query:    1 SQIRQSRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD-YSEDVGVKVDRPADEPMPEA 288
            SQIR  R+KM EI+  +AASC L  L  K I EVIGREIEK+T  IYPLQNV IRKVK+LK+PKFDLG L+ +HG+  ++D G KV+R   E + E+
Sbjct:  159 SQIRAIRKKMTEIIQREAASCTLSQLTTKLIPEVIGREIEKSTQGIYPLQNVHIRKVKLLKSPKFDLGALLNLHGESTTDDQGHKVEREFKETVLES 255          
BLAST of CX298447 vs. ExPASy Swiss-Prot
Match: RS3A_PENMQ (40S ribosomal protein S1 OS=Penicillium marneffei (strain ATCC 18224 / CBS 334.59 / QM 7333) GN=rps1 PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 3.083e-23
Identity = 57/97 (58.76%), Postives = 71/97 (73.20%), Query Frame = 1
Query:    1 SQIRQSRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD-YSEDVGVKVDRPADEPMPEA 288
            SQIR  R+KM EI+  +AASC L  L  K I EVIGREIEK+T  IYPLQNV IRKVK+LK+PKFDLG L+ +HG+  ++D G KV+R   E + E+
Sbjct:  159 SQIRAIRKKMTEIIQREAASCTLSQLTTKLIPEVIGREIEKSTQGIYPLQNVHIRKVKLLKSPKFDLGALLNLHGESTTDDQGHKVEREFKETVLES 255          
BLAST of CX298447 vs. ExPASy Swiss-Prot
Match: RS3A_NECH7 (40S ribosomal protein S1 OS=Nectria haematococca (strain 77-13-4 / FGSC 9596 / MPVI) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 5.259e-23
Identity = 57/96 (59.38%), Postives = 70/96 (72.92%), Query Frame = 1
Query:    1 SQIRQSRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDY-SEDVGVKVDRPADEPMPE 285
            SQIR  RRKM +I+  +A+SC L  L  K I EVIGREIEK+T  IYPLQNV IRKVK+LK+PKFDLG LM +HG+  ++D G KV+R   E + E
Sbjct:  159 SQIRAIRRKMTDIIQREASSCTLTQLTSKLIPEVIGREIEKSTQGIYPLQNVHIRKVKLLKSPKFDLGALMALHGESGTDDQGQKVEREFKERVLE 254          
BLAST of CX298447 vs. ExPASy Swiss-Prot
Match: RS3A_YARLI (40S ribosomal protein S1 OS=Yarrowia lipolytica GN=RPS1 PE=3 SV=2)

HSP 1 Score: 105.916 bits (263), Expect = 8.970e-23
Identity = 53/87 (60.92%), Postives = 67/87 (77.01%), Query Frame = 1
Query:    1 SQIRQSRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKVDR 261
            SQI Q R+KM +I+V +A++  L  L  K I EVIGREIEKAT +IYPLQNV+IRKVK+LK PKFDLG L+ +HG  ++D G KV+R
Sbjct:  159 SQINQIRKKMTDIVVREASNVTLAQLTAKLIPEVIGREIEKATQNIYPLQNVYIRKVKLLKQPKFDLGALLALHGGATDDNGKKVNR 245          
BLAST of CX298447 vs. ExPASy Swiss-Prot
Match: RS3A_SCLS1 (40S ribosomal protein S1 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=rps1 PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 8.970e-23
Identity = 57/96 (59.38%), Postives = 69/96 (71.88%), Query Frame = 1
Query:    1 SQIRQSRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSED-VGVKVDRPADEPMPE 285
            SQIR  R+KM EI+  +A++C L  L  K I EVIGREIEKAT  IYPLQNV IRKVK+LKAPKFDLG L+ +HG+ + D  G KV+R   E + E
Sbjct:  159 SQIRAIRKKMTEIIQREASTCTLTQLTAKLIPEVIGREIEKATQGIYPLQNVHIRKVKLLKAPKFDLGALLNLHGESNTDEQGQKVEREFKEKVLE 254          
BLAST of CX298447 vs. ExPASy Swiss-Prot
Match: RS3A_BOTFB (40S ribosomal protein S1 OS=Botryotinia fuckeliana (strain B05.10) GN=rps1 PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 8.970e-23
Identity = 57/96 (59.38%), Postives = 69/96 (71.88%), Query Frame = 1
Query:    1 SQIRQSRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSED-VGVKVDRPADEPMPE 285
            SQIR  R+KM EI+  +A++C L  L  K I EVIGREIEKAT  IYPLQNV IRKVK+LKAPKFDLG L+ +HG+ + D  G KV+R   E + E
Sbjct:  159 SQIRAIRKKMTEIIQREASTCTLTQLTAKLIPEVIGREIEKATQGIYPLQNVHIRKVKLLKAPKFDLGALLNLHGESNTDEQGQKVEREFKEKVLE 254          
BLAST of CX298447 vs. ExPASy Swiss-Prot
Match: RS3A_PENCW (40S ribosomal protein S1 OS=Penicillium chrysogenum (strain ATCC 28089 / DSM 1075 / Wisconsin 54-1255) GN=rps1 PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.172e-22
Identity = 55/97 (56.70%), Postives = 71/97 (73.20%), Query Frame = 1
Query:    1 SQIRQSRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD-YSEDVGVKVDRPADEPMPEA 288
            SQIR  R+KM EI+  +A++C L  L  K I EVIGREIEK+T  IYPLQNV IRKVK+LK+PKFDLG L+ +HG+  ++D G KV+R   E + E+
Sbjct:  159 SQIRAIRKKMTEIIQREASTCTLSQLTHKLIPEVIGREIEKSTQGIYPLQNVHIRKVKLLKSPKFDLGALLALHGESATDDKGQKVEREFKETVLES 255          
BLAST of CX298447 vs. ExPASy Swiss-Prot
Match: RS3A2_SCHPO (40S ribosomal protein S1-B OS=Schizosaccharomyces pombe GN=rps102 PE=1 SV=3)

HSP 1 Score: 105.531 bits (262), Expect = 1.172e-22
Identity = 53/85 (62.35%), Postives = 68/85 (80.00%), Query Frame = 1
Query:    1 SQIRQSRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKV 255
            SQIR  R+KM +++  Q +SC ++ LV+K I EVIGREIE+AT SI+PLQNV +RKVKILKAPK D  KL+E+HG+ S+DVG KV
Sbjct:  159 SQIRAIRQKMFQVIQNQTSSCSMRELVQKLIPEVIGREIERATGSIFPLQNVLVRKVKILKAPKHDAQKLLELHGE-SQDVGTKV 242          
BLAST of CX298447 vs. ExPASy Swiss-Prot
Match: RS3A_MAGGR (40S ribosomal protein S1 OS=Magnaporthe grisea GN=RPS1 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.530e-22
Identity = 57/96 (59.38%), Postives = 69/96 (71.88%), Query Frame = 1
Query:    1 SQIRQSRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSED-VGVKVDRPADEPMPE 285
            SQIR  RRKM EI+  +A++C L+ L  K I EVIGREIEKAT  IYPLQNV IRKVK+LK PKFDLG L+ +HG+ + D  G KV+R   E + E
Sbjct:  159 SQIRAIRRKMTEIIQREASTCTLQQLTNKLIPEVIGREIEKATQGIYPLQNVHIRKVKLLKQPKFDLGGLLALHGESTTDEQGQKVEREFKERVLE 254          
The following BLAST results are available for this feature:
BLAST of CX298447 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 147
Match NameE-valueIdentityDescription
RS3A_EMENI2.361e-2358.7640S ribosomal protein S1 OS=Emericella nidulans GN... [more]
RS3A_TALSN3.083e-2358.7640S ribosomal protein S1 OS=Talaromyces stipitatus... [more]
RS3A_PENMQ3.083e-2358.7640S ribosomal protein S1 OS=Penicillium marneffei ... [more]
RS3A_NECH75.259e-2359.3840S ribosomal protein S1 OS=Nectria haematococca (... [more]
RS3A_YARLI8.970e-2360.9240S ribosomal protein S1 OS=Yarrowia lipolytica GN... [more]
RS3A_SCLS18.970e-2359.3840S ribosomal protein S1 OS=Sclerotinia sclerotior... [more]
RS3A_BOTFB8.970e-2359.3840S ribosomal protein S1 OS=Botryotinia fuckeliana... [more]
RS3A_PENCW1.172e-2256.7040S ribosomal protein S1 OS=Penicillium chrysogenu... [more]
RS3A2_SCHPO1.172e-2262.3540S ribosomal protein S1-B OS=Schizosaccharomyces ... [more]
RS3A_MAGGR1.530e-2259.3840S ribosomal protein S1 OS=Magnaporthe grisea GN=... [more]

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Properties
Property NameValue
Genbank descriptionC06012C09SK RindPdig24 Citrus clementina cDNA clone C06012C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298447 ID=CX298447; Name=CX298447; organism=Citrus clementina; type=EST; length=470bp
AGCCAGATTAGACAGTCTCGCCGCAAGATGAGGGAGATCATGGTTGCTCA
GGCAGCATCTTGTGATCTTAAGAGCTTGGTCGAAAAGTTCATTGCTGAAG
TGATTGGAAGAGAGATTGAGAAGGCAACGTCAAGCATATACCCCTTACAA
AATGTGTTCATTCGCAAAGTGAAGATCCTGAAAGCTCCCAAGTTTGATCT
TGGAAAATTGATGGAGGTTCACGGTGATTACTCGGAAGATGTTGGTGTGA
AGGTGGATAGGCCAGCTGATGAGCCCATGCCTGAAGCACCAACTGAAGTG
ATTGGAGCTTGAACGTGAATGAAGAAATTTTTCTAGTTTTGTTTTTCACT
ACTATTCTGATCTGGGCAGTTTTGTTTGTTATGAATTCATCATATATGAA
TGTTTCAAGTTGTTTGCAGATTTTAAATATTCTAAAACCNAANAAAAAAA
AAAAAAAAAAAAAAAAAAAA
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