CX298447

Overview
NameCX298447
Unique NameCX298447
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length470
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX298447 vs. ExPASy Swiss-Prot
Match: RS3A_BOVIN (40S ribosomal protein S3a OS=Bos taurus GN=RPS3A PE=2 SV=3)

HSP 1 Score: 99.3673 bits (246), Expect = 8.396e-21
Identity = 50/93 (53.76%), Postives = 67/93 (72.04%), Query Frame = 1
Query:    4 QIRQSRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-------EDVGVKVDR 261
            Q+RQ R+KM EIM  +  + DLK +V K I + IG++IEKA  SIYPL +VF+RKVK+LK PKF+LGKLME+HG+ S       ++ G KV+R
Sbjct:  160 QVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGSSSGKATGDETGAKVER 252          
BLAST of CX298447 vs. ExPASy Swiss-Prot
Match: RS3A_SALSA (40S ribosomal protein S3a OS=Salmo salar GN=rps3a PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.097e-20
Identity = 49/95 (51.58%), Postives = 66/95 (69.47%), Query Frame = 1
Query:    4 QIRQSRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD---------YSEDVGVKVDR 261
            Q+RQ R+KM EIM  +  + DLK +V K I + +G++IEKA  SIYPL +V++RKVK+LK PKF+LGKLME+HG+           +D G KVDR
Sbjct:  160 QVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSVGKDIEKACQSIYPLHDVYVRKVKMLKKPKFELGKLMELHGEGGGSSAAKPSGDDTGAKVDR 254          
BLAST of CX298447 vs. ExPASy Swiss-Prot
Match: RS3A_PLAF7 (40S ribosomal protein S3a OS=Plasmodium falciparum (isolate 3D7) GN=MAL3P7.35 PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.432e-20
Identity = 51/86 (59.30%), Postives = 63/86 (73.26%), Query Frame = 1
Query:    1 SQIRQSRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKVD 258
            SQI++ R+KM +IM A+A+   LK LV+KFI E IG+EIEK    IYPLQNV IRKVKILK PK D+ KLME+H D  E+ G  V+
Sbjct:  159 SQIKKIRKKMVDIMTAEASKVLLKDLVKKFIPESIGKEIEKQCKKIYPLQNVLIRKVKILKRPKLDISKLMELHTDPKEESGKNVN 244          
BLAST of CX298447 vs. ExPASy Swiss-Prot
Match: RS3A_RAT (40S ribosomal protein S3a OS=Rattus norvegicus GN=Rps3a PE=1 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 1.870e-20
Identity = 49/93 (52.69%), Postives = 66/93 (70.97%), Query Frame = 1
Query:    4 QIRQSRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD-------YSEDVGVKVDR 261
            Q+RQ R+KM EIM  +  + DLK +V K I + IG++IEKA  SIYPL +VF+RKVK+LK PKF+LGKLME+HG+         ++ G KV+R
Sbjct:  160 QVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGGSSGKTTGDETGAKVER 252          
BLAST of CX298447 vs. ExPASy Swiss-Prot
Match: RS3A_MOUSE (40S ribosomal protein S3a OS=Mus musculus GN=Rps3a PE=1 SV=3)

HSP 1 Score: 98.2117 bits (243), Expect = 1.870e-20
Identity = 49/93 (52.69%), Postives = 66/93 (70.97%), Query Frame = 1
Query:    4 QIRQSRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD-------YSEDVGVKVDR 261
            Q+RQ R+KM EIM  +  + DLK +V K I + IG++IEKA  SIYPL +VF+RKVK+LK PKF+LGKLME+HG+         ++ G KV+R
Sbjct:  160 QVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGGSSGKAAGDETGAKVER 252          
BLAST of CX298447 vs. ExPASy Swiss-Prot
Match: RS3A_GECJA (40S ribosomal protein S3a OS=Gecko japonicus GN=RPS3A PE=2 SV=3)

HSP 1 Score: 98.2117 bits (243), Expect = 1.870e-20
Identity = 49/93 (52.69%), Postives = 67/93 (72.04%), Query Frame = 1
Query:    4 QIRQSRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-------EDVGVKVDR 261
            Q+RQ R+KM EIM  +  + DLK +V K I + IG+++EKA  SIYPL +VF+RKVK+LK PKF+LGKLME+HG+ S       ++ G KV+R
Sbjct:  160 QVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDMEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGSSSGKATGDETGAKVER 252          
BLAST of CX298447 vs. ExPASy Swiss-Prot
Match: RS3A_TETNG (40S ribosomal protein S3a OS=Tetraodon nigroviridis GN=rps3a PE=3 SV=3)

HSP 1 Score: 97.8265 bits (242), Expect = 2.443e-20
Identity = 49/95 (51.58%), Postives = 66/95 (69.47%), Query Frame = 1
Query:    4 QIRQSRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD---------YSEDVGVKVDR 261
            Q+RQ R+KM EIM  +  + DLK +V K I + IG++IEKA  SIYPL +V++RKVK+LK PKF+LGKLME+HG+           +D G KV+R
Sbjct:  160 QVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVYVRKVKMLKKPKFELGKLMELHGEGGAGTAAKATGDDTGAKVER 254          
BLAST of CX298447 vs. ExPASy Swiss-Prot
Match: RS3A_CANTT (40S ribosomal protein S1 OS=Candida tropicalis (strain ATCC MYA-3404 / T1) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 2.443e-20
Identity = 50/86 (58.14%), Postives = 65/86 (75.58%), Query Frame = 1
Query:    1 SQIRQSRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKV 255
            S++R+ R+KM EIM  + ++C L  L  K I EVIGREIEK+T +I+PLQNV IRKVK+LK PKFDLG L+ +HG+ S E+ G KV
Sbjct:  159 SKLREVRKKMIEIMQREVSNCTLAQLTSKLIPEVIGREIEKSTQTIFPLQNVHIRKVKLLKQPKFDLGSLLALHGEGSTEEKGKKV 244          
BLAST of CX298447 vs. ExPASy Swiss-Prot
Match: RS3A_CANDC (40S ribosomal protein S1 OS=Candida dubliniensis (strain CD36 / CBS 7987 / NCPF 3949 / NRRL Y-17841) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 2.443e-20
Identity = 50/86 (58.14%), Postives = 65/86 (75.58%), Query Frame = 1
Query:    1 SQIRQSRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKV 255
            S++R+ R+KM EIM  + ++C L  L  K I EVIGREIEK+T +I+PLQNV IRKVK+LK PKFDLG L+ +HG+ S E+ G KV
Sbjct:  159 SKLREVRKKMIEIMQREVSNCTLAQLTSKLIPEVIGREIEKSTQTIFPLQNVHIRKVKLLKQPKFDLGSLLALHGEGSTEEKGKKV 244          
BLAST of CX298447 vs. ExPASy Swiss-Prot
Match: RS3A_CANAW (40S ribosomal protein S1 OS=Candida albicans (strain WO-1) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 2.443e-20
Identity = 50/86 (58.14%), Postives = 65/86 (75.58%), Query Frame = 1
Query:    1 SQIRQSRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKV 255
            S++R+ R+KM EIM  + ++C L  L  K I EVIGREIEK+T +I+PLQNV IRKVK+LK PKFDLG L+ +HG+ S E+ G KV
Sbjct:  159 SKLREVRKKMIEIMQREVSNCTLAQLTSKLIPEVIGREIEKSTQTIFPLQNVHIRKVKLLKQPKFDLGSLLALHGEGSTEEKGKKV 244          
The following BLAST results are available for this feature:
BLAST of CX298447 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 147
Match NameE-valueIdentityDescription
RS3A_BOVIN8.396e-2153.7640S ribosomal protein S3a OS=Bos taurus GN=RPS3A P... [more]
RS3A_SALSA1.097e-2051.5840S ribosomal protein S3a OS=Salmo salar GN=rps3a ... [more]
RS3A_PLAF71.432e-2059.3040S ribosomal protein S3a OS=Plasmodium falciparum... [more]
RS3A_RAT1.870e-2052.6940S ribosomal protein S3a OS=Rattus norvegicus GN=... [more]
RS3A_MOUSE1.870e-2052.6940S ribosomal protein S3a OS=Mus musculus GN=Rps3a... [more]
RS3A_GECJA1.870e-2052.6940S ribosomal protein S3a OS=Gecko japonicus GN=RP... [more]
RS3A_TETNG2.443e-2051.5840S ribosomal protein S3a OS=Tetraodon nigroviridi... [more]
RS3A_CANTT2.443e-2058.1440S ribosomal protein S1 OS=Candida tropicalis (st... [more]
RS3A_CANDC2.443e-2058.1440S ribosomal protein S1 OS=Candida dubliniensis (... [more]
RS3A_CANAW2.443e-2058.1440S ribosomal protein S1 OS=Candida albicans (stra... [more]

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Properties
Property NameValue
Genbank descriptionC06012C09SK RindPdig24 Citrus clementina cDNA clone C06012C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298447 ID=CX298447; Name=CX298447; organism=Citrus clementina; type=EST; length=470bp
AGCCAGATTAGACAGTCTCGCCGCAAGATGAGGGAGATCATGGTTGCTCA
GGCAGCATCTTGTGATCTTAAGAGCTTGGTCGAAAAGTTCATTGCTGAAG
TGATTGGAAGAGAGATTGAGAAGGCAACGTCAAGCATATACCCCTTACAA
AATGTGTTCATTCGCAAAGTGAAGATCCTGAAAGCTCCCAAGTTTGATCT
TGGAAAATTGATGGAGGTTCACGGTGATTACTCGGAAGATGTTGGTGTGA
AGGTGGATAGGCCAGCTGATGAGCCCATGCCTGAAGCACCAACTGAAGTG
ATTGGAGCTTGAACGTGAATGAAGAAATTTTTCTAGTTTTGTTTTTCACT
ACTATTCTGATCTGGGCAGTTTTGTTTGTTATGAATTCATCATATATGAA
TGTTTCAAGTTGTTTGCAGATTTTAAATATTCTAAAACCNAANAAAAAAA
AAAAAAAAAAAAAAAAAAAA
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