CX298447

Overview
NameCX298447
Unique NameCX298447
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length470
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX298447 vs. ExPASy Swiss-Prot
Match: RS3A_AJECH (40S ribosomal protein S1 OS=Ajellomyces capsulata (strain H143) GN=RPS1 PE=3 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 3.527e-19
Identity = 53/97 (54.64%), Postives = 70/97 (72.16%), Query Frame = 1
Query:    1 SQIRQSRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKVDRPADEPMPEA 288
            SQIR  R+K+ EI+  +A++  L  L  K I EVIGREI+K+T  IYPLQNV IRKVK+LK+PKFDLG L+ +HG+ S +D G KV+R   E + E+
Sbjct:  159 SQIRAIRKKITEIIQREASTRTLAQLT-KLIPEVIGREIDKSTHGIYPLQNVHIRKVKLLKSPKFDLGALLALHGESSTDDKGQKVEREFKEQVLES 254          
BLAST of CX298447 vs. ExPASy Swiss-Prot
Match: RS3A2_PICST (40S ribosomal protein S1-B OS=Pichia stipitis GN=RPS1B PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 3.527e-19
Identity = 49/87 (56.32%), Postives = 65/87 (74.71%), Query Frame = 1
Query:    1 SQIRQSRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKVD 258
            S++R+ R+KM EIM  + ++  L  L  K I EVIGREIEK+T +I+PLQNV IRKVK+LK PKFDLG L+ +HG+ S E+ G KV+
Sbjct:  159 SKLREVRKKMIEIMQREVSNVTLAQLTSKLIPEVIGREIEKSTQTIFPLQNVHIRKVKLLKQPKFDLGALLALHGEGSTEEKGKKVN 245          
BLAST of CX298447 vs. ExPASy Swiss-Prot
Match: RS3A1_PICST (40S ribosomal protein S1-A OS=Pichia stipitis GN=RPS1A PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 4.607e-19
Identity = 48/87 (55.17%), Postives = 64/87 (73.56%), Query Frame = 1
Query:    1 SQIRQSRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDY-SEDVGVKVD 258
            S++R+ R+KM EIM  + ++  L  L  K I EVIGREIEK+T +I+PLQNV IRKVK+LK PKFDLG L+ +HG+   E+ G KV+
Sbjct:  159 SKLREVRKKMSEIMQREVSAVTLAQLTSKLIPEVIGREIEKSTQTIFPLQNVHIRKVKVLKQPKFDLGALLALHGESGGEEKGRKVN 245          
BLAST of CX298447 vs. ExPASy Swiss-Prot
Match: RS3A_PERAM (40S ribosomal protein S3a OS=Periplaneta americana GN=Parcxpwex01 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 6.017e-19
Identity = 47/101 (46.53%), Postives = 66/101 (65.35%), Query Frame = 1
Query:    1 SQIRQSRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD---YSEDVGVKVDRPADEPMPEAPT 294
            +Q+R  R+KM EI+     S DLK +V K + + I ++IEKA   IYPL +V+IRKVK+LK P+F+L KL+E+HGD    S++ G +VDRP     P   T
Sbjct:  162 TQVRAIRKKMVEIITRDVTSSDLKEVVNKLLPDSIAKDIEKACQGIYPLHDVYIRKVKVLKKPRFELSKLLELHGDGKGGSDEPGARVDRPEGYEPPVQET 262          
BLAST of CX298447 vs. ExPASy Swiss-Prot
Match: RS3A2_CLAL4 (40S ribosomal protein S1-B OS=Clavispora lusitaniae (strain ATCC 42720) GN=RPS1B PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 6.017e-19
Identity = 49/86 (56.98%), Postives = 63/86 (73.26%), Query Frame = 1
Query:    1 SQIRQSRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKV 255
            S++R+ R+KM EIM  + ++  L  L  K I EVIGREIEK+T SI PLQN+ IRKVK+LK PKFDLG L+ +HG+ S E+ G KV
Sbjct:  159 SKLREVRKKMIEIMQREVSNVTLAQLTSKLIPEVIGREIEKSTQSILPLQNIHIRKVKLLKQPKFDLGSLLALHGEGSTEEKGKKV 244          
BLAST of CX298447 vs. ExPASy Swiss-Prot
Match: RS3A1_CLAL4 (40S ribosomal protein S1-A OS=Clavispora lusitaniae (strain ATCC 42720) GN=RPS1A PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 6.017e-19
Identity = 49/86 (56.98%), Postives = 63/86 (73.26%), Query Frame = 1
Query:    1 SQIRQSRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKV 255
            S++R+ R+KM EIM  + ++  L  L  K I EVIGREIEK+T SI PLQN+ IRKVK+LK PKFDLG L+ +HG+ S E+ G KV
Sbjct:  159 SKLREVRKKMIEIMQREVSNVTLAQLTSKLIPEVIGREIEKSTQSILPLQNIHIRKVKLLKQPKFDLGSLLALHGEGSTEEKGKKV 244          
BLAST of CX298447 vs. ExPASy Swiss-Prot
Match: RS3A_IXOSC (40S ribosomal protein S3a OS=Ixodes scapularis PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 7.858e-19
Identity = 50/111 (45.05%), Postives = 69/111 (62.16%), Query Frame = 1
Query:    1 SQIRQSRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSE-------------DVGVKVDRPADEPMPEAPT 294
            +Q+R  R+KM E+MV + +S +LK +V K I   IG++IEK+   IYPL +V IRKVK+LK PKF+LGKL+E+HG+ +              + GVKVDRP     P   T
Sbjct:  159 NQVRLIRKKMTEMMVVEVSSSNLKDVVNKLIPGSIGKDIEKSCQHIYPLHDVLIRKVKVLKKPKFELGKLLELHGEGTSKGGAASTAAVAKGEEGVKVDRPEGYEPPVLET 269          
BLAST of CX298447 vs. ExPASy Swiss-Prot
Match: RS3A_CRYHO (40S ribosomal protein S3a OS=Cryptosporidium hominis GN=Chro.40360 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 7.858e-19
Identity = 50/87 (57.47%), Postives = 62/87 (71.26%), Query Frame = 1
Query:    1 SQIRQSRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVH--GDYSEDVGVKV 255
            SQIRQ R+KM EI+ A+A    L+ LV+KFI E IG+EIEKA   I+PLQ+VFIRKVK+L  P FD+ +LME H   D  E+ G KV
Sbjct:  159 SQIRQIRKKMVEIITAEAEGTTLRDLVKKFIPESIGKEIEKACRHIFPLQHVFIRKVKVLSKPSFDVSRLMESHVGADGVEEKGTKV 245          
BLAST of CX298447 vs. ExPASy Swiss-Prot
Match: RS3A_BRUMA (40S ribosomal protein S3a OS=Brugia malayi GN=Bm1_27225 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 7.858e-19
Identity = 49/97 (50.52%), Postives = 65/97 (67.01%), Query Frame = 1
Query:    1 SQIRQSRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD---YSEDVGVKVDRPADEPMP 282
            S+IRQ R KM E M  +    DLK +  K + + IG++IEKA S IYPLQ+V IRKVKILK PKF++G+LME+H D   ++   G K++RP D   P
Sbjct:  156 SKIRQIRAKMVEYMQKEVQGSDLKDVCHKLVPDSIGKDIEKACSYIYPLQDVCIRKVKILKKPKFEIGRLMEMHTDVSTFTSAEGEKIERPDDYEPP 252          
BLAST of CX298447 vs. ExPASy Swiss-Prot
Match: RS3A_CAEBR (40S ribosomal protein S3a OS=Caenorhabditis briggsae GN=rps-1 PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.986e-18
Identity = 49/97 (50.52%), Postives = 64/97 (65.98%), Query Frame = 1
Query:    1 SQIRQSRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGV---KVDRPADEPMP 282
            S+IR+ R +M   +  +   CDLK +V K I + IG++IEK  S +YPLQ V+IRKVKI+K PK DLG+L ++HGD S  VG    KVDRP D   P
Sbjct:  157 SKIRKIRSEMISCIEKEVTGCDLKEVVSKLIPDSIGKDIEKTCSKLYPLQEVYIRKVKIIKRPKIDLGRLHDLHGD-SITVGADGEKVDRPDDYEPP 252          
The following BLAST results are available for this feature:
BLAST of CX298447 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 147
Match NameE-valueIdentityDescription
RS3A_AJECH3.527e-1954.6440S ribosomal protein S1 OS=Ajellomyces capsulata ... [more]
RS3A2_PICST3.527e-1956.3240S ribosomal protein S1-B OS=Pichia stipitis GN=R... [more]
RS3A1_PICST4.607e-1955.1740S ribosomal protein S1-A OS=Pichia stipitis GN=R... [more]
RS3A_PERAM6.017e-1946.5340S ribosomal protein S3a OS=Periplaneta americana... [more]
RS3A2_CLAL46.017e-1956.9840S ribosomal protein S1-B OS=Clavispora lusitania... [more]
RS3A1_CLAL46.017e-1956.9840S ribosomal protein S1-A OS=Clavispora lusitania... [more]
RS3A_IXOSC7.858e-1945.0540S ribosomal protein S3a OS=Ixodes scapularis PE=... [more]
RS3A_CRYHO7.858e-1957.4740S ribosomal protein S3a OS=Cryptosporidium homin... [more]
RS3A_BRUMA7.858e-1950.5240S ribosomal protein S3a OS=Brugia malayi GN=Bm1_... [more]
RS3A_CAEBR2.986e-1850.5240S ribosomal protein S3a OS=Caenorhabditis briggs... [more]

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Properties
Property NameValue
Genbank descriptionC06012C09SK RindPdig24 Citrus clementina cDNA clone C06012C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298447 ID=CX298447; Name=CX298447; organism=Citrus clementina; type=EST; length=470bp
AGCCAGATTAGACAGTCTCGCCGCAAGATGAGGGAGATCATGGTTGCTCA
GGCAGCATCTTGTGATCTTAAGAGCTTGGTCGAAAAGTTCATTGCTGAAG
TGATTGGAAGAGAGATTGAGAAGGCAACGTCAAGCATATACCCCTTACAA
AATGTGTTCATTCGCAAAGTGAAGATCCTGAAAGCTCCCAAGTTTGATCT
TGGAAAATTGATGGAGGTTCACGGTGATTACTCGGAAGATGTTGGTGTGA
AGGTGGATAGGCCAGCTGATGAGCCCATGCCTGAAGCACCAACTGAAGTG
ATTGGAGCTTGAACGTGAATGAAGAAATTTTTCTAGTTTTGTTTTTCACT
ACTATTCTGATCTGGGCAGTTTTGTTTGTTATGAATTCATCATATATGAA
TGTTTCAAGTTGTTTGCAGATTTTAAATATTCTAAAACCNAANAAAAAAA
AAAAAAAAAAAAAAAAAAAA
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