CX298451

Overview
NameCX298451
Unique NameCX298451
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length608
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX298451 vs. ExPASy Swiss-Prot
Match: ISPG_SYNS9 (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Synechococcus sp. (strain CC9902) GN=ispG PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 7.124e-18
Identity = 42/75 (56.00%), Postives = 55/75 (73.33%), Query Frame = 1
Query:   16 REKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIAMEQATDALIQLIKDHGRWAEP 240
            R  TSHL G+ IA+MGCIVNGPGEMADAD+GYVG  PG I LY G+  +++ +  ++   ALIQLI++ G W +P
Sbjct:  324 RNATSHLKGLDIAVMGCIVNGPGEMADADYGYVGKGPGIIALYRGREEIRK-VPEKEGVQALIQLIQEDGLWVDP 397          
BLAST of CX298451 vs. ExPASy Swiss-Prot
Match: ISPG_CYAA5 (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Cyanothece sp. (strain ATCC 51142) GN=ispG PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 7.124e-18
Identity = 43/75 (57.33%), Postives = 53/75 (70.67%), Query Frame = 1
Query:   16 REKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIAMEQATDALIQLIKDHGRWAEP 240
            RE T HL G+ IA+MGCIVNGPGEMADAD+GYVG   G I LY G+  +K+ +  +Q  + LI LIK  GRW +P
Sbjct:  331 REATKHLTGLDIAVMGCIVNGPGEMADADYGYVGKQAGYISLYRGREEIKK-VPEDQGVEELINLIKADGRWIDP 404          
BLAST of CX298451 vs. ExPASy Swiss-Prot
Match: ISPG_BACV8 (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154) GN=ispG PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.215e-17
Identity = 43/76 (56.58%), Postives = 54/76 (71.05%), Query Frame = 1
Query:   10 RDREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIAMEQATDALIQLIKDHGRWAE 237
            R +  TSHL G+ I IMGCIVNGPGEMADAD+GYVG   GKI LY  K  +++ I  +QA + LI+LIK +G + E
Sbjct:  538 RIKTATSHLKGLKIGIMGCIVNGPGEMADADYGYVGAGRGKISLYKKKECIEKNIPEDQAVEKLIELIKANGDYTE 613          
BLAST of CX298451 vs. ExPASy Swiss-Prot
Match: ISPG_PROMA (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Prochlorococcus marinus GN=ispG PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.073e-17
Identity = 40/75 (53.33%), Postives = 55/75 (73.33%), Query Frame = 1
Query:   16 REKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIAMEQATDALIQLIKDHGRWAEP 240
            R+ TSHL G+ IA+MGCIVNGPGEMADAD+GYVG   G I LY G+  +++ +  ++   AL++LIK  G+W +P
Sbjct:  334 RDATSHLTGLDIAVMGCIVNGPGEMADADYGYVGKGKGIIALYRGREEIRK-VPEDEGVSALVELIKSDGKWIDP 407          
BLAST of CX298451 vs. ExPASy Swiss-Prot
Match: ISPG_MICAN (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Microcystis aeruginosa (strain NIES-843) GN=ispG PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.536e-17
Identity = 43/75 (57.33%), Postives = 50/75 (66.67%), Query Frame = 1
Query:   16 REKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIAMEQATDALIQLIKDHGRWAEP 240
            R  T HL G+ IA+MGCIVNGPGEMADAD+GYVG   G I LY G+  +KR +   +    LI LIK  GRW EP
Sbjct:  333 RAATQHLTGLDIAVMGCIVNGPGEMADADYGYVGKQAGYISLYRGREEIKR-VPESEGVSELINLIKADGRWVEP 406          
BLAST of CX298451 vs. ExPASy Swiss-Prot
Match: ISPG_SYNY3 (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Synechocystis sp. (strain PCC 6803) GN=ispG PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 6.031e-17
Identity = 43/75 (57.33%), Postives = 50/75 (66.67%), Query Frame = 1
Query:   16 REKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIAMEQATDALIQLIKDHGRWAEP 240
            RE T HL G+ IA+MGCIVNGPGEMADAD+GYVG   G I LY G+  +KR +        LI LIK  GRW +P
Sbjct:  330 REATKHLTGLDIAVMGCIVNGPGEMADADYGYVGKQAGYIALYRGREEIKR-VPETDGVQELINLIKADGRWVDP 403          
BLAST of CX298451 vs. ExPASy Swiss-Prot
Match: ISPG_BACTN (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Bacteroides thetaiotaomicron GN=ispG PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.029e-16
Identity = 40/70 (57.14%), Postives = 51/70 (72.86%), Query Frame = 1
Query:   10 RDREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIAMEQATDALIQLIKD 219
            R +  TSHL G+ I IMGCIVNGPGEMADAD+GYVG   GKI LY GK  V++ I  E+A + L++ I++
Sbjct:  537 RIKAATSHLKGLKIGIMGCIVNGPGEMADADYGYVGAGRGKISLYKGKVCVEKNIPEEEAVERLLEFIRN 606          
The following BLAST results are available for this feature:
BLAST of CX298451 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
ISPG_SYNS97.124e-1856.004-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_CYAA57.124e-1857.334-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_BACV81.215e-1756.584-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_PROMA2.073e-1753.334-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_MICAN3.536e-1757.334-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_SYNY36.031e-1757.334-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_BACTN1.029e-1657.144-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC06012D01SK RindPdig24 Citrus clementina cDNA clone C06012D01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298451 ID=CX298451; Name=CX298451; organism=Citrus clementina; type=EST; length=608bp
GGCCGAGGCAGAGATCGAGAGAAAACATCGCACTTGCCCGGTGTTTCGAT
TGCTATCATGGGTTGCATTGTCAATGGACCTGGAGAGATGGCTGATGCAG
ACTTTGGGTATGTTGGTGGGGCTCCTGGAAAGATTGACCTGTATGTCGGG
AAGACTGTGGTGAAGCGTGGTATTGCAATGGAGCAGGCAACCGATGCCTT
GATCCAACTAATAAAGGATCACGGGCGCTGGGCGGAGCCTCCCGCAGAAG
AGTAGGATATGGTAATTTCCATCAACAGATATACAATAAAGACTCAGTTG
AAGGGAGACCACCATACCCCAGCTGTTGTATATTAAATTCCACATGGCAC
AAAAGACTACACAGTAATAGCAGATCATATAAATTTTTCCGTCAGATGGA
GCATCTATAGTTCACCAAGGAAAGCGTTATATGTTCCTCAAGTGTATGCA
GATAAAGCTGTAACACTCCCATTAGTAACAAGTCCAATGTTTCCTACATT
TTGTTTTCTTACACAAACCAAATAATAATGTATTTCCTATGGCATATATT
AGCTTCTAGTGAAACCACTTGAGTTATGTCTGTGGGTTTCTCTTGTATGA
GAAATGTT
back to top