CX298452

Overview
NameCX298452
Unique NameCX298452
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length678
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX298452 vs. ExPASy Swiss-Prot
Match: ACCO2_SOLLC (1-aminocyclopropane-1-carboxylate oxidase 2 OS=Solanum lycopersicum GN=ACO2 PE=2 SV=1)

HSP 1 Score: 328.561 bits (841), Expect = 1.897e-89
Identity = 159/223 (71.30%), Postives = 179/223 (80.27%), Query Frame = 2
Query:    8 EFMDTVERLTKAHYRKCMEQRFKELVASRALEGIQTEVNDMDWESTFYVRHLPQSTINEVPDLDEEYRKVMXXXXXXXXXXXXXXXXXXXXXXXXXXGYLKKVFHGANGPTFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVISQTDGEGRMSLASFYNPGSDAVIYPAPAL 676
            E MDTVE+LTK HY+KCMEQRFKELVA + LEG++ EV DMDWESTF++RHLP S I+++PDLD+ YR+VM                           YLK  F+G+ GP FGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDG+WIDVPP+RHSIVVNLGDQ+EVITNGKYKSV HRVI+Q DG  RMSLASFYNPG+DA+IYPAPAL
Sbjct:   44 EVMDTVEKLTKGHYKKCMEQRFKELVAKKGLEGVEVEVTDMDWESTFFLRHLPSSNISQLPDLDDVYREVMRDFRKRLEKLAEELLDLLCENLGLEKSYLKNTFYGSKGPNFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGRWIDVPPMRHSIVVNLGDQLEVITNGKYKSVMHRVIAQKDGT-RMSLASFYNPGNDALIYPAPAL 265          
BLAST of CX298452 vs. ExPASy Swiss-Prot
Match: ACCO_ACTDE (1-aminocyclopropane-1-carboxylate oxidase OS=Actinidia deliciosa GN=ACO PE=2 SV=1)

HSP 1 Score: 328.176 bits (840), Expect = 2.478e-89
Identity = 154/223 (69.06%), Postives = 183/223 (82.06%), Query Frame = 2
Query:    8 EFMDTVERLTKAHYRKCMEQRFKELVASRALEGIQTEVNDMDWESTFYVRHLPQSTINEVPDLDEEYRKVMXXXXXXXXXXXXXXXXXXXXXXXXXXGYLKKVFHGANGPTFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVISQTDGEGRMSLASFYNPGSDAVIYPAPAL 676
            E MDTVERLTK HY KCMEQRFKE+VA++ LE +Q+E+ND+DWESTF++RHLP S I+E+PDL++++RK M                          GYLKK F+G+ GPTFGTKVSNYPPCP+P+LIKGLRAHTDAGGIILLFQD+KVSGLQLLKDG+WIDVPP++HSIV+N+GDQ+EVITNGKYKSV HRVI+Q DG  RMS+ASFYNPGSDAV+YPAPAL
Sbjct:   44 ELMDTVERLTKEHYNKCMEQRFKEMVATKGLEAVQSEINDLDWESTFFLRHLPVSNISEIPDLEQDHRKAMKEFAEKLEKLAEQLLDLLCENVGLEKGYLKKAFYGSKGPTFGTKVSNYPPCPRPELIKGLRAHTDAGGIILLFQDNKVSGLQLLKDGEWIDVPPMKHSIVINIGDQLEVITNGKYKSVMHRVIAQPDG-NRMSIASFYNPGSDAVMYPAPAL 265          
BLAST of CX298452 vs. ExPASy Swiss-Prot
Match: ACCO_PEA (1-aminocyclopropane-1-carboxylate oxidase OS=Pisum sativum GN=ACO PE=2 SV=1)

HSP 1 Score: 325.479 bits (833), Expect = 1.606e-88
Identity = 156/223 (69.96%), Postives = 181/223 (81.17%), Query Frame = 2
Query:    8 EFMDTVERLTKAHYRKCMEQRFKELVASRALEGIQTEVNDMDWESTFYVRHLPQSTINEVPDLDEEYRKVMXXXXXXXXXXXXXXXXXXXXXXXXXXGYLKKVFHGANGPTFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVISQTDGEGRMSLASFYNPGSDAVIYPAPAL 676
            E MDTVE+LTK HY+KCMEQRFKE+VA++ LE +Q+E++D+DWESTF++RHLP S+I+E+PDLD++YRKVM                          GYLKK F+G+ GP FGTKVSNYPPCPKP+LIKGLRAHTDAGGIILLFQDDKVSGLQLLKD QWIDVPP+RHSIV+NLGDQ+EVITNGKYKSV HRVI+QTDG  RMS+ASFYNPG DAVI PA  L
Sbjct:   44 EMMDTVEKLTKEHYKKCMEQRFKEMVATKGLECVQSEIDDLDWESTFFLRHLPVSSISEIPDLDDDYRKVMKEFALKLEELAEELLDLLCENLGLEKGYLKKAFYGSKGPNFGTKVSNYPPCPKPELIKGLRAHTDAGGIILLFQDDKVSGLQLLKDDQWIDVPPMRHSIVINLGDQLEVITNGKYKSVMHRVIAQTDG-ARMSIASFYNPGDDAVISPASTL 265          
BLAST of CX298452 vs. ExPASy Swiss-Prot
Match: ACCO3_CUCME (1-aminocyclopropane-1-carboxylate oxidase 3 OS=Cucumis melo GN=ACO3 PE=2 SV=1)

HSP 1 Score: 325.479 bits (833), Expect = 1.606e-88
Identity = 154/223 (69.06%), Postives = 180/223 (80.72%), Query Frame = 2
Query:    8 EFMDTVERLTKAHYRKCMEQRFKELVASRALEGIQTEVNDMDWESTFYVRHLPQSTINEVPDLDEEYRKVMXXXXXXXXXXXXXXXXXXXXXXXXXXGYLKKVFHGANGPTFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVISQTDGEGRMSLASFYNPGSDAVIYPAPAL 676
            E MD VE+LTK HYRKCMEQRFKE+VAS+ L+ ++TE+ND DWESTF++RHLP S ++E+ DLDEEY+KVM                          GYLKKVF+G+ GP FGTKVSNYPPCPKP+LIKGLRAHTDAGG+ILLFQDDKVSGL +LKDG+W+DVPP+ HSIV+NLGDQ+EVITNGKYKSV HRVI+Q DG  RMS+ASFYNPG+DAVIYPAPAL
Sbjct:   45 ELMDKVEKLTKEHYRKCMEQRFKEMVASKGLDSVETEINDTDWESTFFLRHLPVSNMSEIGDLDEEYKKVMKEFADELEKLAEEVLDLLCENLGLEKGYLKKVFYGSKGPNFGTKVSNYPPCPKPELIKGLRAHTDAGGLILLFQDDKVSGLHVLKDGKWVDVPPMHHSIVINLGDQLEVITNGKYKSVMHRVIAQEDG-NRMSIASFYNPGNDAVIYPAPAL 266          
BLAST of CX298452 vs. ExPASy Swiss-Prot
Match: ACCO1_MALDO (1-aminocyclopropane-1-carboxylate oxidase 1 OS=Malus domestica PE=1 SV=1)

HSP 1 Score: 318.931 bits (816), Expect = 1.503e-86
Identity = 150/223 (67.26%), Postives = 181/223 (81.17%), Query Frame = 2
Query:    8 EFMDTVERLTKAHYRKCMEQRFKELVASRALEGIQTEVNDMDWESTFYVRHLPQSTINEVPDLDEEYRKVMXXXXXXXXXXXXXXXXXXXXXXXXXXGYLKKVFHGANGPTFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVISQTDGEGRMSLASFYNPGSDAVIYPAPAL 676
            E +DTVE++TK HY+K MEQRFKE+VA++ L+ +Q+E++D+DWESTF++RHLP S I+E+PDL+EEYRK M                          GYLKKVF+G+ GP FGTKVSNYPPCPKPDLIKGLRAH+DAGGIILLFQDDKVSGLQLLKDG+W+DVPP+ HSIV+NLGDQIEVITNGKYKSV HRVI+Q+DG  RMS+ASFYNPG+D+ I PAPA+
Sbjct:   44 ELLDTVEKMTKDHYKKTMEQRFKEMVAAKGLDDVQSEIHDLDWESTFFLRHLPSSNISEIPDLEEEYRKTMKEFAVELEKLAEKLLDLLCENLGLEKGYLKKVFYGSKGPNFGTKVSNYPPCPKPDLIKGLRAHSDAGGIILLFQDDKVSGLQLLKDGEWVDVPPMHHSIVINLGDQIEVITNGKYKSVMHRVIAQSDGT-RMSIASFYNPGNDSFISPAPAV 265          
BLAST of CX298452 vs. ExPASy Swiss-Prot
Match: ACCO_DIACA (Probable 1-aminocyclopropane-1-carboxylate oxidase OS=Dianthus caryophyllus GN=ACO PE=2 SV=1)

HSP 1 Score: 318.161 bits (814), Expect = 2.564e-86
Identity = 153/223 (68.61%), Postives = 176/223 (78.92%), Query Frame = 2
Query:    8 EFMDTVERLTKAHYRKCMEQRFKELVASRALEGIQTEVNDMDWESTFYVRHLPQSTINEVPDLDEEYRKVMXXXXXXXXXXXXXXXXXXXXXXXXXXGYLKKVFHGANGPTFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVISQTDGEGRMSLASFYNPGSDAVIYPAPAL 676
            E MD VER+TK HY+K  EQ+FK++V ++ L   +++VND+DWESTFY+RH P S I+EVPDLD++YRK+M                           YLK  F+GANGPTFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDG W+DVPP++HSIVVNLGDQ+EVITNGKYKSV HRVI+QTDG  RMS+ASFYNPGSDAVIYPAP L
Sbjct:   50 ELMDKVERMTKEHYKKFREQKFKDMVQTKGLVSAESQVNDIDWESTFYLRHRPTSNISEVPDLDDQYRKLMKEFAAQIERLSEQLLDLLCENLGLEKAYLKNAFYGANGPTFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGHWVDVPPMKHSIVVNLGDQLEVITNGKYKSVMHRVIAQTDG-NRMSIASFYNPGSDAVIYPAPTL 271          
BLAST of CX298452 vs. ExPASy Swiss-Prot
Match: ACCO2_MALDO (1-aminocyclopropane-1-carboxylate oxidase 2 OS=Malus domestica GN=ACO2 PE=2 SV=1)

HSP 1 Score: 314.309 bits (804), Expect = 3.703e-85
Identity = 149/223 (66.82%), Postives = 177/223 (79.37%), Query Frame = 2
Query:    8 EFMDTVERLTKAHYRKCMEQRFKELVASRALEGIQTEVNDMDWESTFYVRHLPQSTINEVPDLDEEYRKVMXXXXXXXXXXXXXXXXXXXXXXXXXXGYLKKVFHGANGPTFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVISQTDGEGRMSLASFYNPGSDAVIYPAPAL 676
            E +DTVE++ K HY+K MEQRFKE+VA++ LE +Q+E++ +DWESTF++RHLP S I+E+PDL+E+YRK M                          GYLKK F+G+ GP FGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDG+W+DVPP+ HSIV+NLGDQIEVITNGKYKS+ HRVI+Q+DG  RMS+ASFYNPG DA I PAPAL
Sbjct:   44 ELLDTVEKMNKDHYKKTMEQRFKEMVAAKGLEAVQSEIHYLDWESTFFLRHLPSSNISEIPDLEEDYRKTMKEFAVELEKLAEKLLDLLCENLGLEKGYLKKAFYGSKGPNFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGEWMDVPPVHHSIVINLGDQIEVITNGKYKSIMHRVIAQSDGT-RMSIASFYNPGDDAFISPAPAL 265          
BLAST of CX298452 vs. ExPASy Swiss-Prot
Match: ACCO_PERAE (1-aminocyclopropane-1-carboxylate oxidase OS=Persea americana GN=ACO PE=2 SV=1)

HSP 1 Score: 306.99 bits (785), Expect = 5.911e-83
Identity = 150/225 (66.67%), Postives = 175/225 (77.78%), Query Frame = 2
Query:    8 EFMDTVERLTKAHYRKCMEQRFKELVASRALEGIQTEVNDMDWESTFYVRHLPQSTINEVPDLDEEYRKVMXXXXXXXXXXXXXXXXXXXXXXXXXXGYLKKVFHGANG--PTFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVISQTDGEGRMSLASFYNPGSDAVIYPAPAL 676
            E MD VERLTK HY+KCMEQRFKEL+AS+ +EG   + NDMDWESTF++RHLP S ++E+PDL +E+RKVM                          GYLK  F G     PTFGTKVSNYPPCP+P+L KGLRAHTDAGG+ILLFQDD+V+GLQLLKDG+W+DVPP+ HSIV+NLGDQ+EVITNGKYKSV HRV++QTDG  RMSLASFYNPGSDAVI+PAPAL
Sbjct:   44 ELMDEVERLTKEHYKKCMEQRFKELMASK-VEGAVVDANDMDWESTFFIRHLPVSNLSEIPDLTDEHRKVMKEFAEKLEKLAEQVLDLLCENLGLEKGYLKMAFAGTTTGLPTFGTKVSNYPPCPRPELFKGLRAHTDAGGLILLFQDDRVAGLQLLKDGEWVDVPPMNHSIVINLGDQVEVITNGKYKSVMHRVVAQTDG-NRMSLASFYNPGSDAVIFPAPAL 266          
BLAST of CX298452 vs. ExPASy Swiss-Prot
Match: ACCO1_BRAJU (1-aminocyclopropane-1-carboxylate oxidase OS=Brassica juncea GN=ACO PE=2 SV=1)

HSP 1 Score: 293.508 bits (750), Expect = 6.763e-79
Identity = 138/223 (61.88%), Postives = 168/223 (75.34%), Query Frame = 2
Query:    8 EFMDTVERLTKAHYRKCMEQRFKELVASRALEGIQTEVNDMDWESTFYVRHLPQSTINEVPDLDEEYRKVMXXXXXXXXXXXXXXXXXXXXXXXXXXGYLKKVFHGANGPTFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVISQTDGEGRMSLASFYNPGSDAVIYPAPAL 676
            + MD  E++TK HY+  MEQ+F +++ S+ LE ++ EV D+DWESTFY+RHLPQS + ++PD+ +EYR  M                          GYLKKVFHG  GPTFGTKVSNYP CPKP++IKGLRAHTDAGGIILLFQDDKV+GLQLLKDG WIDVPPL HSIV+NLGDQ+EVITNG+YKS+ HRV++Q +G  RMS+ASFYNPGSDA I PA +L
Sbjct:   47 DLMDNAEKMTKEHYKISMEQKFNDMLKSKGLENLEREVEDVDWESTFYLRHLPQSNLYDIPDMSDEYRTAMKDFGKRLENLAEDLLDLLCENLGLEKGYLKKVFHGTKGPTFGTKVSNYPACPKPEMIKGLRAHTDAGGIILLFQDDKVTGLQLLKDGDWIDVPPLNHSIVINLGDQLEVITNGRYKSMMHRVVTQKEG-NRMSIASFYNPGSDAEISPASSL 268          
BLAST of CX298452 vs. ExPASy Swiss-Prot
Match: ACCO1_DORSP (1-aminocyclopropane-1-carboxylate oxidase 1 OS=Doritaenopsis sp. GN=ACO1 PE=2 SV=1)

HSP 1 Score: 287.345 bits (734), Expect = 4.847e-77
Identity = 146/226 (64.60%), Postives = 172/226 (76.11%), Query Frame = 2
Query:    8 EFMDTVERLTKAHYRKCMEQRFKELVASRALEGIQT-EVNDMDWESTFYVRHLPQSTINEVPDLDEEYRKVMXXXXXXXXXXXXXXXXXXXXXXXXXXGYLKKVFHGANG--PTFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVISQTDGEGRMSLASFYNPGSDAVIYPAPAL 676
            E M+ VE + K HYR+  EQRFKE  AS+ L+ ++  E  ++DWESTF++RHLP S I+++PDLD++ R  M                          GYLKKVF G +   PTFGTKVSNYPPCPKP+LIKGLRAHTDAGGIILLFQDDKVSGLQLLKDG+WIDVPP+RHSIVVN+GDQ+EVITNGKYKSV HRV++QTDG  RMS+ASFYNPGSDAVI+PAPAL
Sbjct:   46 ELMNRVETVNKEHYRRFREQRFKEF-ASKTLDTVENVEPENLDWESTFFLRHLPTSNISQIPDLDDDCRSTMKEFALELENLAERLLDLLCEDLGLEKGYLKKVFCGGSDGLPTFGTKVSNYPPCPKPELIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGEWIDVPPVRHSIVVNIGDQLEVITNGKYKSVLHRVVAQTDG-NRMSIASFYNPGSDAVIFPAPAL 269          
The following BLAST results are available for this feature:
BLAST of CX298452 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
ACCO2_SOLLC1.897e-8971.301-aminocyclopropane-1-carboxylate oxidase 2 OS=Sol... [more]
ACCO_ACTDE2.478e-8969.061-aminocyclopropane-1-carboxylate oxidase OS=Actin... [more]
ACCO_PEA1.606e-8869.961-aminocyclopropane-1-carboxylate oxidase OS=Pisum... [more]
ACCO3_CUCME1.606e-8869.061-aminocyclopropane-1-carboxylate oxidase 3 OS=Cuc... [more]
ACCO1_MALDO1.503e-8667.261-aminocyclopropane-1-carboxylate oxidase 1 OS=Mal... [more]
ACCO_DIACA2.564e-8668.61Probable 1-aminocyclopropane-1-carboxylate oxidase... [more]
ACCO2_MALDO3.703e-8566.821-aminocyclopropane-1-carboxylate oxidase 2 OS=Mal... [more]
ACCO_PERAE5.911e-8366.671-aminocyclopropane-1-carboxylate oxidase OS=Perse... [more]
ACCO1_BRAJU6.763e-7961.881-aminocyclopropane-1-carboxylate oxidase OS=Brass... [more]
ACCO1_DORSP4.847e-7764.601-aminocyclopropane-1-carboxylate oxidase 1 OS=Dor... [more]

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Properties
Property NameValue
Genbank descriptionC06012D02SK RindPdig24 Citrus clementina cDNA clone C06012D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298452 ID=CX298452; Name=CX298452; organism=Citrus clementina; type=EST; length=678bp
TGAGCCGGAGTTTATGGACACAGTGGAGAGATTGACCAAGGCGCATTACA
GAAAATGTATGGAGCAAAGATTCAAGGAGCTTGTTGCAAGCAGGGCACTT
GAAGGTATCCAAACCGAGGTCAATGACATGGACTGGGAAAGCACTTTCTA
TGTGCGTCACCTCCCTCAGTCGACCATCAATGAAGTCCCAGATCTTGATG
AGGAATACAGGAAGGTGATGAAGGAATTTGCATTGAAATTGGAGAAATTA
GCAGAGGAGCTATTGGACTTGTTATGCGAGAATCTTGGATTAGAGAAGGG
GTACTTGAAAAAGGTCTTTCATGGGGCAAACGGACCAACCTTTGGTACCA
AAGTTAGCAACTACCCACCATGCCCCAAGCCAGATTTGATCAAGGGTCTC
CGGGCTCACACCGACGCCGGCGGCATCATCTTGCTCTTCCAGGATGACAA
AGTCAGTGGCCTTCAGCTTCTTAAAGATGGCCAGTGGATTGATGTGCCCC
CATTGCGCCACTCCATTGTTGTCAACCTCGGTGACCAAATTGAGGTGATC
ACCAATGGAAAGTACAAGAGTGTGGAGCACAGAGTGATTTCTCAAACCGA
CGGCGAGGGCCGGATGTCCCTAGCTTCATTCTACAATCCTGGAAGTGATG
CTGTGATCTATCCAGCACCAGCATTGCT
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