CX298452

Overview
NameCX298452
Unique NameCX298452
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length678
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX298452 vs. ExPASy Swiss-Prot
Match: ACCO1_ORYSI (1-aminocyclopropane-1-carboxylate oxidase 1 OS=Oryza sativa subsp. indica GN=ACO1 PE=2 SV=1)

HSP 1 Score: 284.648 bits (727), Expect = 3.142e-76
Identity = 140/226 (61.95%), Postives = 166/226 (73.45%), Query Frame = 2
Query:    8 EFMDTVERLTKAHYRKCMEQRFKELVASRALEGIQ--TEVNDMDWESTFYVRHLPQSTINEVPDLDEEYRKVMXXXXXXXXXXXXXXXXXXXXXXXXXXGYLKKVFHG-ANGPTFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVISQTDGEGRMSLASFYNPGSDAVIYPAPAL 676
            E MD VE++TK HY++  EQRF E  +    EG     +   +DWESTF+VRHLP+S I ++PDLD++YR++M                          GYL K F G A  PTFGTKVS+YPPCP+PDL+KGLRAHTDAGGIILLFQDD V GLQLLKDG+W+DVPP+RHSIVVNLGDQ+EVITNG+YKSV HRV++QTDG  RMS+ASFYNPGSDAVI PAPAL
Sbjct:   47 ELMDEVEKMTKDHYKRVREQRFLEFASKTLKEGCDDVNKAEKLDWESTFFVRHLPESNIADIPDLDDDYRRLMKRFAAELETLAERLLDLLCENLGLEKGYLTKAFRGPAGAPTFGTKVSSYPPCPRPDLVKGLRAHTDAGGIILLFQDDSVGGLQLLKDGEWVDVPPMRHSIVVNLGDQLEVITNGRYKSVMHRVVAQTDG-NRMSIASFYNPGSDAVISPAPAL 271          
BLAST of CX298452 vs. ExPASy Swiss-Prot
Match: ACCO1_ORYSJ (1-aminocyclopropane-1-carboxylate oxidase 1 OS=Oryza sativa subsp. japonica GN=ACO1 PE=2 SV=1)

HSP 1 Score: 283.493 bits (724), Expect = 6.999e-76
Identity = 139/226 (61.50%), Postives = 167/226 (73.89%), Query Frame = 2
Query:    8 EFMDTVERLTKAHYRKCMEQRFKELVASRALEGIQ--TEVNDMDWESTFYVRHLPQSTINEVPDLDEEYRKVMXXXXXXXXXXXXXXXXXXXXXXXXXXGYLKKVFHG-ANGPTFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVISQTDGEGRMSLASFYNPGSDAVIYPAPAL 676
            E MD VE++TK HY++  EQRF E  +    EG     +   +DWESTF+VRHLP+S I ++PDLD++YR++M                          GYL K F G A  PTFGTKVS+YPPCP+PDL++GLRAHTDAGGIILLFQDD+V GLQLLKDG+W+DVPP+RHSIVVNLGDQ+EVITNG+YKSV HRV++QTDG  RMS+ASFYNPGSDAVI PAPAL
Sbjct:   47 ELMDEVEKMTKDHYKRVREQRFLEFASKTLKEGCDDVNKAEKLDWESTFFVRHLPESNIADIPDLDDDYRRLMKRFAAELETLAERLLDLLCENLGLEKGYLTKAFRGPAGAPTFGTKVSSYPPCPRPDLVEGLRAHTDAGGIILLFQDDRVGGLQLLKDGEWVDVPPMRHSIVVNLGDQLEVITNGRYKSVIHRVVAQTDG-NRMSIASFYNPGSDAVISPAPAL 271          
BLAST of CX298452 vs. ExPASy Swiss-Prot
Match: ACCO2_DORSP (1-aminocyclopropane-1-carboxylate oxidase 2 OS=Doritaenopsis sp. GN=ACO2 PE=2 SV=1)

HSP 1 Score: 281.567 bits (719), Expect = 2.660e-75
Identity = 143/226 (63.27%), Postives = 172/226 (76.11%), Query Frame = 2
Query:    8 EFMDTVERLTKAHYRKCMEQRFKELVASRALEGIQT-EVNDMDWESTFYVRHLPQSTINEVPDLDEEYRKVMXXXXXXXXXXXXXXXXXXXXXXXXXXGYLKKVFHGANG--PTFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVISQTDGEGRMSLASFYNPGSDAVIYPAPAL 676
            E M+ VE + K HYR+  EQRFKE  AS+ L+ ++  + +++DWESTF++RHLP S I+++PDLD++ R  M                          GYLK+VF G +   PTFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKD +WI+VPPLR+SIVVN+GDQ+EVITNGKYKSV HRV++QTDG  RMS+ASFYNPGSDAVI+PAPAL
Sbjct:   46 ELMNRVEAVNKEHYRRFREQRFKEF-ASKTLDSVENVDPDNLDWESTFFLRHLPTSNISQIPDLDDDCRATMKEFARELEKLAERLLDLLCEDLGLEKGYLKRVFCGGSDGLPTFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDREWIEVPPLRYSIVVNIGDQLEVITNGKYKSVLHRVVAQTDG-NRMSIASFYNPGSDAVIFPAPAL 269          
BLAST of CX298452 vs. ExPASy Swiss-Prot
Match: ACCO_DENCR (1-aminocyclopropane-1-carboxylate oxidase OS=Dendrobium crumenatum GN=ACO PE=2 SV=1)

HSP 1 Score: 269.24 bits (687), Expect = 1.366e-71
Identity = 135/215 (62.79%), Postives = 158/215 (73.49%), Query Frame = 2
Query:   38 KAHYRKCMEQRFKELVASRALEGIQTEVNDMDWESTFYVRHLPQSTINEVPDLDEEYRKVMXXXXXXXXXXXXXXXXXXXXXXXXXXGYLKKVFHGANG--PTFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVISQTDGEGRMSLASFYNPGSDAVIYPAPAL 676
            + HYR+  EQRFKE  A     G   + +++DWESTF++RHLP S I++VPDLDE+    M                          GYLK+VF G +   PTFGTKVSNYPPCPKP+LIKGLRAHTDAGGIILLFQDD VSGLQLLKD +WIDVPP+RHSIVVN+GDQ+EVITNGKYKSV HRV++QT+G  RMS+ASFYNPGSDAVI+PAP L
Sbjct:   50 REHYRRFREQRFKEFAAKTLDSGENVDGDNLDWESTFFLRHLPTSNISQVPDLDEDCGSTMKEFALGLEKLAERLLDLLCENLGLEKGYLKRVFCGGSDGLPTFGTKVSNYPPCPKPELIKGLRAHTDAGGIILLFQDDTVSGLQLLKDEEWIDVPPMRHSIVVNIGDQLEVITNGKYKSVMHRVVAQTNG-NRMSIASFYNPGSDAVIFPAPEL 263          
BLAST of CX298452 vs. ExPASy Swiss-Prot
Match: ACCO_MUSAC (1-aminocyclopropane-1-carboxylate oxidase OS=Musa acuminata GN=MAO1B PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 7.064e-44
Identity = 99/227 (43.61%), Postives = 137/227 (60.35%), Query Frame = 2
Query:    8 EFMDTVERLTKAHYRKCMEQRFK-----ELVASRALEGIQTEVNDMDWESTFYVRHLPQSTINEVPDLDEEYRKVMXXXXXXXXXXXXXXXXXXXXXXXXXXGYLKKVFHG--ANGPTFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVISQTDGEGRMSLASFYNPGSDAVIYPA 667
            E ++ V++++   Y K  E+RF+     +L+ +   EG    ++++DWE  F ++       NE P    ++ + M                          G +KK F G   + P FGTKVS+YPPCP+ DL+KGLRAHTDAGG+ILLFQDD+V GLQ+LKDG+WIDV PL  +IV+N GDQIEV++NG+YKS  HRV++ + G  R S+ASFYNP   A I PA
Sbjct:   43 ELLERVKKVSSECY-KLREERFEGSKPVQLLDTLVKEGDGQRLDNVDWEDVFVLQD-----DNEWPSNPPDFEETMKEYREEIRKLAEKMMEVMDENLGFEKGCIKKAFSGDGQHPPFFGTKVSHYPPCPRLDLVKGLRAHTDAGGVILLFQDDQVGGLQMLKDGRWIDVQPLADAIVINTGDQIEVLSNGRYKSAWHRVLATSHG-NRRSIASFYNPSLKATIAPA 262          
BLAST of CX298452 vs. ExPASy Swiss-Prot
Match: SRG1_ARATH (Protein SRG1 OS=Arabidopsis thaliana GN=SRG1 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.791e-24
Identity = 68/232 (29.31%), Postives = 118/232 (50.86%), Query Frame = 2
Query:    2 EPEFMDTVERLTKAHYRKCMEQRFKELVASRALEG-----IQTEVNDMDWESTFY--VRHLPQSTINEVPDLDEEYRKVMXXXXXXXXXXXXXXXXXXXXXXXXXXGYLKKVFHGANGPTFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVISQTDGEGRMSLASFYNPGSDAVIYPAPAL 676
            +  F+D V+   +  +   ME++ K       +EG     + +E   +DW   F+  V+ +     +  P L   +R  +                            L+K+F   +      +++ YPPCP+PD + GL  H+D+ G+ +L Q + V GLQ+ KDG+W+ V PL ++ +VN+GD +E+ITNG Y+S+EHR +  ++ E R+S+A+F+N G    + PA +L
Sbjct:   92 DSSFLDKVKSEIQDFFNLPMEEKKKFWQRPDEIEGFGQAFVVSEDQKLDWADLFFHTVQPVELRKPHLFPKLPLPFRDTLEMYSSEVQSVAKILIAKMARALEIKPEELEKLFDDVDSVQ-SMRMNYYPPCPQPDQVIGLTPHSDSVGLTVLMQVNDVEGLQIKKDGKWVPVKPLPNAFIVNIGDVLEIITNGTYRSIEHRGVVNSEKE-RLSIATFHNVGMYKEVGPAKSL 321          
BLAST of CX298452 vs. ExPASy Swiss-Prot
Match: FLS_CITUN (Flavonol synthase/flavanone 3-hydroxylase OS=Citrus unshiu GN=FLS PE=1 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.693e-21
Identity = 53/126 (42.06%), Postives = 80/126 (63.49%), Query Frame = 2
Query:  299 GYLKKVFHGANGPTFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVISQTDGEGRMSLASFYNPGSDAVIYPAPAL 676
            G LK+   G +   +  K++ YPPCP+PDL  G+ AHTD   + +L  ++ V GLQ+ KD +WID   + +++V+++GDQIE+++NGKYK+V HR     D + RMS   F  P +D V+ P P L
Sbjct:  186 GVLKEAA-GGDDIEYMLKINYYPPCPRPDLALGVVAHTDLSALTVLVPNE-VPGLQVFKDDRWIDAKYIPNALVIHIGDQIEILSNGKYKAVLHRTTVNKD-KTRMSWPVFLEPPADTVVGPLPQL 308          
BLAST of CX298452 vs. ExPASy Swiss-Prot
Match: FLS_PETHY (Flavonol synthase/flavanone 3-hydroxylase OS=Petunia hybrida GN=FL PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.888e-21
Identity = 50/109 (45.87%), Postives = 72/109 (66.06%), Query Frame = 2
Query:  350 KVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVISQTDGEGRMSLASFYNPGSDAVIYPAPAL 676
            K++ YPPCP+PDL  G+ AHTD   I +L  ++ V GLQ+ KDG W DV  + ++++V++GDQ+E+++NGKYKSV HR     D + RMS   F  P S+  + P P L
Sbjct:  215 KINYYPPCPRPDLALGVVAHTDMSYITILVPNE-VQGLQVFKDGHWYDVKYIPNALIVHIGDQVEILSNGKYKSVYHRTTVNKD-KTRMSWPVFLEPPSEHEVGPIPKL 321          
BLAST of CX298452 vs. ExPASy Swiss-Prot
Match: FLS_MALDO (Flavonol synthase/flavanone 3-hydroxylase OS=Malus domestica GN=FLS PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 8.403e-21
Identity = 54/124 (43.55%), Postives = 78/124 (62.90%), Query Frame = 2
Query:  305 LKKVFHGANGPTFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVISQTDGEGRMSLASFYNPGSDAVIYPAPAL 676
            LKK   G N   +  K++ YPPCP+PDL  G+ AHTD   + +L  +D V GLQ  KDG+W DV  + +++V+++GDQ+E+++NGKY SV HR     D + R+S   F  P +D V+ P P L
Sbjct:  190 LKKAAGGDN-LEYLLKINYYPPCPRPDLALGVVAHTDMSTVTILVPND-VQGLQACKDGRWYDVKYIPNALVIHIGDQMEIMSNGKYTSVLHRTTVNKD-KTRISWPVFLEPPADHVVGPHPQL 310          
BLAST of CX298452 vs. ExPASy Swiss-Prot
Match: FL3H_CALCH (Naringenin,2-oxoglutarate 3-dioxygenase OS=Callistephus chinensis GN=FHT PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.445e-20
Identity = 48/106 (45.28%), Postives = 70/106 (66.04%), Query Frame = 2
Query:  353 VSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDG--QWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVISQTDGEGRMSLASFYNPGSDAVIYP 664
            V+ YP CP+PDL  GL+ HTD G I LL Q D+V GLQ  +DG   WI V P+  + VVNLGD    ++NG++K+ +H+ +  +    R+S+A+F NP  +A++YP
Sbjct:  197 VNYYPKCPQPDLTLGLKRHTDPGTITLLLQ-DQVGGLQATRDGGESWITVKPVEGAFVVNLGDHGHYLSNGRFKNADHQAVVNS-STSRLSIATFQNPAPEAIVYP 300          
The following BLAST results are available for this feature:
BLAST of CX298452 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
ACCO1_ORYSI3.142e-7661.951-aminocyclopropane-1-carboxylate oxidase 1 OS=Ory... [more]
ACCO1_ORYSJ6.999e-7661.501-aminocyclopropane-1-carboxylate oxidase 1 OS=Ory... [more]
ACCO2_DORSP2.660e-7563.271-aminocyclopropane-1-carboxylate oxidase 2 OS=Dor... [more]
ACCO_DENCR1.366e-7162.791-aminocyclopropane-1-carboxylate oxidase OS=Dendr... [more]
ACCO_MUSAC7.064e-4443.611-aminocyclopropane-1-carboxylate oxidase OS=Musa ... [more]
SRG1_ARATH2.791e-2429.31Protein SRG1 OS=Arabidopsis thaliana GN=SRG1 PE=2 ... [more]
FLS_CITUN1.693e-2142.06Flavonol synthase/flavanone 3-hydroxylase OS=Citru... [more]
FLS_PETHY2.888e-2145.87Flavonol synthase/flavanone 3-hydroxylase OS=Petun... [more]
FLS_MALDO8.403e-2143.55Flavonol synthase/flavanone 3-hydroxylase OS=Malus... [more]
FL3H_CALCH2.445e-2045.28Naringenin,2-oxoglutarate 3-dioxygenase OS=Callist... [more]

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Properties
Property NameValue
Genbank descriptionC06012D02SK RindPdig24 Citrus clementina cDNA clone C06012D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298452 ID=CX298452; Name=CX298452; organism=Citrus clementina; type=EST; length=678bp
TGAGCCGGAGTTTATGGACACAGTGGAGAGATTGACCAAGGCGCATTACA
GAAAATGTATGGAGCAAAGATTCAAGGAGCTTGTTGCAAGCAGGGCACTT
GAAGGTATCCAAACCGAGGTCAATGACATGGACTGGGAAAGCACTTTCTA
TGTGCGTCACCTCCCTCAGTCGACCATCAATGAAGTCCCAGATCTTGATG
AGGAATACAGGAAGGTGATGAAGGAATTTGCATTGAAATTGGAGAAATTA
GCAGAGGAGCTATTGGACTTGTTATGCGAGAATCTTGGATTAGAGAAGGG
GTACTTGAAAAAGGTCTTTCATGGGGCAAACGGACCAACCTTTGGTACCA
AAGTTAGCAACTACCCACCATGCCCCAAGCCAGATTTGATCAAGGGTCTC
CGGGCTCACACCGACGCCGGCGGCATCATCTTGCTCTTCCAGGATGACAA
AGTCAGTGGCCTTCAGCTTCTTAAAGATGGCCAGTGGATTGATGTGCCCC
CATTGCGCCACTCCATTGTTGTCAACCTCGGTGACCAAATTGAGGTGATC
ACCAATGGAAAGTACAAGAGTGTGGAGCACAGAGTGATTTCTCAAACCGA
CGGCGAGGGCCGGATGTCCCTAGCTTCATTCTACAATCCTGGAAGTGATG
CTGTGATCTATCCAGCACCAGCATTGCT
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