CX298452

Overview
NameCX298452
Unique NameCX298452
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length678
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX298452 vs. ExPASy Swiss-Prot
Match: G2OX8_ARATH (Gibberellin 2-beta-dioxygenase 8 OS=Arabidopsis thaliana GN=GA2OX7 PE=1 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 3.193e-20
Identity = 49/103 (47.57%), Postives = 69/103 (66.99%), Query Frame = 2
Query:  350 KVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVISQTDGEGRMSLASFYNPGSDAVI 658
            +++ YPPCPKP  + GL  HTD+  + +L+QD +V GLQL+KD +WI V P   ++++N+GD  +  +NG YKSVEHRV++    E R S A F  P  DAVI
Sbjct:  196 RMNRYPPCPKPSEVYGLMPHTDSDFLTILYQD-QVGGLQLIKDNRWIAVKPNPKALIINIGDLFQAWSNGMYKSVEHRVMTNPKVE-RFSTAYFMCPSYDAVI 296          
BLAST of CX298452 vs. ExPASy Swiss-Prot
Match: FL3H_DIACA (Naringenin,2-oxoglutarate 3-dioxygenase OS=Dianthus caryophyllus GN=FHT PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.170e-20
Identity = 49/106 (46.23%), Postives = 70/106 (66.04%), Query Frame = 2
Query:  353 VSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDG--QWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVISQTDGEGRMSLASFYNPGSDAVIYP 664
            V+ YP CP+PDL  GL+ HTD G I LL Q D+V GLQ  +DG   WI V P+  + VVNLGD    ++NG++K+ +H+ +  ++   R+S+A+F NP  DA +YP
Sbjct:  200 VNYYPKCPQPDLTLGLKRHTDPGTITLLLQ-DQVGGLQATRDGGKTWITVQPVPGAFVVNLGDHGHFLSNGRFKNADHQAVVNSEC-SRLSIATFQNPSPDATVYP 303          
BLAST of CX298452 vs. ExPASy Swiss-Prot
Match: FL3H_VITVI (Naringenin,2-oxoglutarate 3-dioxygenase OS=Vitis vinifera GN=F3H PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.447e-20
Identity = 48/106 (45.28%), Postives = 70/106 (66.04%), Query Frame = 2
Query:  353 VSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDG--QWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVISQTDGEGRMSLASFYNPGSDAVIYP 664
            V+ YP CP+PDL  GL+ HTD G I LL Q D+V GLQ  +DG   WI V P+  + VVNLGD    ++NG++K+ +H+ +  ++   R+S+A+F NP  +A +YP
Sbjct:  200 VNFYPQCPQPDLTLGLKRHTDPGTITLLLQ-DQVGGLQATRDGGKTWITVQPVEGAFVVNLGDHGHYLSNGRFKNADHQAVVNSN-HSRLSIATFQNPAPEATVYP 303          
BLAST of CX298452 vs. ExPASy Swiss-Prot
Match: FL3H_PETHY (Naringenin,2-oxoglutarate 3-dioxygenase (Fragment) OS=Petunia hybrida GN=AN3 PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.447e-20
Identity = 48/106 (45.28%), Postives = 70/106 (66.04%), Query Frame = 2
Query:  353 VSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDG--QWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVISQTDGEGRMSLASFYNPGSDAVIYP 664
            V+ YP CP+PDL  GL+ HTD G I LL Q D+V GLQ  KD    WI V P+  + VVNLGD    ++NG++K+ +H+ +  ++   R+S+A+F NP  +A++YP
Sbjct:  202 VNFYPKCPEPDLTLGLKRHTDPGTITLLLQ-DQVGGLQATKDNGKTWITVQPVEGAFVVNLGDHGHFLSNGRFKNADHQAVVNSN-SSRLSIATFQNPAPEAIVYP 305          
BLAST of CX298452 vs. ExPASy Swiss-Prot
Match: FL3H_MALDO (Naringenin,2-oxoglutarate 3-dioxygenase OS=Malus domestica PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.114e-20
Identity = 47/106 (44.34%), Postives = 71/106 (66.98%), Query Frame = 2
Query:  353 VSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDG--QWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVISQTDGEGRMSLASFYNPGSDAVIYP 664
            V+ YP CP+PDL  GL+ HTD G I LL Q D+V GLQ  +D    WI V P+  + VVNLGD   +++NG++K+ +H+ +  ++   R+S+A+F NP  +A++YP
Sbjct:  200 VNFYPKCPQPDLTLGLKRHTDPGTITLLLQ-DQVGGLQATRDDGKTWITVQPVEGAFVVNLGDHGHLLSNGRFKNADHQAVVNSN-SSRLSIATFQNPAQEAIVYP 303          
BLAST of CX298452 vs. ExPASy Swiss-Prot
Match: FL3H_ARATH (Naringenin,2-oxoglutarate 3-dioxygenase OS=Arabidopsis thaliana GN=F3H PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.114e-20
Identity = 48/106 (45.28%), Postives = 69/106 (65.09%), Query Frame = 2
Query:  353 VSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDG--QWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVISQTDGEGRMSLASFYNPGSDAVIYP 664
            V+ YP CP+PDL  GL+ HTD G I LL Q D+V GLQ  +D    WI V P+  + VVNLGD    ++NG++K+ +H+ +  ++   R+S+A+F NP  DA +YP
Sbjct:  199 VNYYPKCPQPDLTLGLKRHTDPGTITLLLQ-DQVGGLQATRDNGKTWITVQPVEGAFVVNLGDHGHFLSNGRFKNADHQAVVNSN-SSRLSIATFQNPAPDATVYP 302          
BLAST of CX298452 vs. ExPASy Swiss-Prot
Match: FL3H_PETCR (Flavanone 3-dioxygenase OS=Petroselinum crispum GN=FHT PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 9.291e-20
Identity = 48/106 (45.28%), Postives = 70/106 (66.04%), Query Frame = 2
Query:  353 VSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDG--QWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVISQTDGEGRMSLASFYNPGSDAVIYP 664
            V+ YP CP+P+L  GL+ HTD G I LL Q D+V GLQ  +DG   WI V P+  + VVNLGD    ++NG++K+ +H+ +  ++   RMS+A+F NP  +A +YP
Sbjct:  200 VNYYPKCPQPNLTLGLKRHTDPGTITLLLQ-DQVGGLQATRDGGKTWITVQPVEGAFVVNLGDHGHYLSNGRFKNADHQAVVNSN-SSRMSIATFQNPAPNATVYP 303          
BLAST of CX298452 vs. ExPASy Swiss-Prot
Match: ACCH3_SOLLC (1-aminocyclopropane-1-carboxylate oxidase homolog OS=Solanum lycopersicum GN=ACO3 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 9.291e-20
Identity = 46/91 (50.55%), Postives = 62/91 (68.13%), Query Frame = 2
Query:  362 YPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVISQTDGEGRMSLASFY 634
            YPPCP+P+L  G   HTD G + +L QDD + GLQ+L    W+DVPP   S+VVN+GD +++++N KY SVEHR IS   G  RMS+  F+
Sbjct:  221 YPPCPQPELTMGTIQHTDIGFVTILLQDD-MGGLQVLHQNHWVDVPPTPGSLVVNIGDFLQLLSNDKYLSVEHRAISNNVG-SRMSITCFF 309          
BLAST of CX298452 vs. ExPASy Swiss-Prot
Match: FL3H_MATIN (Naringenin,2-oxoglutarate 3-dioxygenase (Fragment) OS=Matthiola incana GN=FHT PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.070e-19
Identity = 47/106 (44.34%), Postives = 69/106 (65.09%), Query Frame = 2
Query:  353 VSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKD--GQWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVISQTDGEGRMSLASFYNPGSDAVIYP 664
            V+ YP CP+PDL  GL+ HTD G I LL Q D+V GLQ  +D    WI V P+  + VVNLGD    ++NG++K+ +H+ +  ++   R+S+A+F NP  +A +YP
Sbjct:  198 VNYYPKCPQPDLTLGLKRHTDPGTITLLLQ-DQVGGLQATRDDGNTWITVQPVEGAFVVNLGDHGHFLSNGRFKNADHQAVVNSN-SSRLSIATFQNPAPEATVYP 301          
BLAST of CX298452 vs. ExPASy Swiss-Prot
Match: FNSI_PETCR (Flavone synthase OS=Petroselinum crispum GN=FNSI PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.703e-19
Identity = 45/106 (42.45%), Postives = 69/106 (65.09%), Query Frame = 2
Query:  353 VSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDG--QWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVISQTDGEGRMSLASFYNPGSDAVIYP 664
            ++ YP CP+PDL  G+R HTD G I +L Q D V GLQ  +DG   WI V P+  + VVNLGD    ++NG++++ +H+ +  +    R+S+A+F NP  +A++YP
Sbjct:  200 INYYPTCPQPDLTLGVRRHTDPGTITILLQ-DMVGGLQATRDGGKTWITVQPVEGAFVVNLGDHGHYLSNGRFRNADHQAVVNST-SSRLSIATFQNPAQNAIVYP 303          
The following BLAST results are available for this feature:
BLAST of CX298452 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
G2OX8_ARATH3.193e-2047.57Gibberellin 2-beta-dioxygenase 8 OS=Arabidopsis th... [more]
FL3H_DIACA4.170e-2046.23Naringenin,2-oxoglutarate 3-dioxygenase OS=Dianthu... [more]
FL3H_VITVI5.447e-2045.28Naringenin,2-oxoglutarate 3-dioxygenase OS=Vitis v... [more]
FL3H_PETHY5.447e-2045.28Naringenin,2-oxoglutarate 3-dioxygenase (Fragment)... [more]
FL3H_MALDO7.114e-2044.34Naringenin,2-oxoglutarate 3-dioxygenase OS=Malus d... [more]
FL3H_ARATH7.114e-2045.28Naringenin,2-oxoglutarate 3-dioxygenase OS=Arabido... [more]
FL3H_PETCR9.291e-2045.28Flavanone 3-dioxygenase OS=Petroselinum crispum GN... [more]
ACCH3_SOLLC9.291e-2050.551-aminocyclopropane-1-carboxylate oxidase homolog ... [more]
FL3H_MATIN2.070e-1944.34Naringenin,2-oxoglutarate 3-dioxygenase (Fragment)... [more]
FNSI_PETCR2.703e-1942.45Flavone synthase OS=Petroselinum crispum GN=FNSI P... [more]

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Properties
Property NameValue
Genbank descriptionC06012D02SK RindPdig24 Citrus clementina cDNA clone C06012D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298452 ID=CX298452; Name=CX298452; organism=Citrus clementina; type=EST; length=678bp
TGAGCCGGAGTTTATGGACACAGTGGAGAGATTGACCAAGGCGCATTACA
GAAAATGTATGGAGCAAAGATTCAAGGAGCTTGTTGCAAGCAGGGCACTT
GAAGGTATCCAAACCGAGGTCAATGACATGGACTGGGAAAGCACTTTCTA
TGTGCGTCACCTCCCTCAGTCGACCATCAATGAAGTCCCAGATCTTGATG
AGGAATACAGGAAGGTGATGAAGGAATTTGCATTGAAATTGGAGAAATTA
GCAGAGGAGCTATTGGACTTGTTATGCGAGAATCTTGGATTAGAGAAGGG
GTACTTGAAAAAGGTCTTTCATGGGGCAAACGGACCAACCTTTGGTACCA
AAGTTAGCAACTACCCACCATGCCCCAAGCCAGATTTGATCAAGGGTCTC
CGGGCTCACACCGACGCCGGCGGCATCATCTTGCTCTTCCAGGATGACAA
AGTCAGTGGCCTTCAGCTTCTTAAAGATGGCCAGTGGATTGATGTGCCCC
CATTGCGCCACTCCATTGTTGTCAACCTCGGTGACCAAATTGAGGTGATC
ACCAATGGAAAGTACAAGAGTGTGGAGCACAGAGTGATTTCTCAAACCGA
CGGCGAGGGCCGGATGTCCCTAGCTTCATTCTACAATCCTGGAAGTGATG
CTGTGATCTATCCAGCACCAGCATTGCT
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