CX298452

Overview
NameCX298452
Unique NameCX298452
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length678
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX298452 vs. ExPASy Swiss-Prot
Match: FLS_SOLTU (Flavonol synthase/flavanone 3-hydroxylase OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.703e-19
Identity = 49/118 (41.53%), Postives = 73/118 (61.86%), Query Frame = 2
Query:  323 GANGPTFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVISQTDGEGRMSLASFYNPGSDAVIYPAPAL 676
            G+    +  K++ YPPCP+PDL  G+ AHTD   I LL  ++    +Q+ KDG W DV  + ++I+V++GDQ+E+++NGKYKSV HR  +    + RMS   F  P S+  + P P L
Sbjct:  210 GSEDIVYMLKINYYPPCPRPDLALGVVAHTDMSYITLLVPNE----VQVFKDGHWYDVNYIPNAIIVHIGDQVEILSNGKYKSVYHRT-TVNKYKTRMSWPVFLEPSSEHEVGPIPNL 322          
BLAST of CX298452 vs. ExPASy Swiss-Prot
Match: ACCH1_ARATH (1-aminocyclopropane-1-carboxylate oxidase homolog 1 OS=Arabidopsis thaliana GN=At1g06620 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.530e-19
Identity = 45/92 (48.91%), Postives = 66/92 (71.74%), Query Frame = 2
Query:  362 YPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVISQTDGEGRMSLASFYN 637
            YPPCP+PDL  GL  H+D   + +L QD  + GLQ+L D  W+DVPP+  ++VVN+GD +++ITN K+ SVEHRV++   G  R+S+A F++
Sbjct:  223 YPPCPQPDLTLGLTKHSDNSFLTILLQDH-IGGLQVLHDQYWVDVPPVPGALVVNVGDLLQLITNDKFISVEHRVLANVAGP-RISVACFFS 312          
BLAST of CX298452 vs. ExPASy Swiss-Prot
Match: FLS_PETCR (Flavonol synthase/flavanone 3-hydroxylase OS=Petroselinum crispum GN=FLS PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.611e-19
Identity = 51/124 (41.13%), Postives = 75/124 (60.48%), Query Frame = 2
Query:  305 LKKVFHGANGPTFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVISQTDGEGRMSLASFYNPGSDAVIYPAPAL 676
            LKK   G +   +  K++ YPPCP+PDL  G+ AHTD   I +L  ++ V GLQ+ KD  W DV  + +++++++GDQIE+++NGKYKSV HR     D + RMS   F  P  + +  P   L
Sbjct:  190 LKKA-SGGDDLIYMLKINYYPPCPRPDLALGVVAHTDMSAITILVPNE-VQGLQVHKDDHWYDVKYIPNALIIHIGDQIEIMSNGKYKSVYHRTTVNKD-KTRMSWPVFLEPPPELLTGPISKL 310          
BLAST of CX298452 vs. ExPASy Swiss-Prot
Match: FLS_EUSGR (Flavonol synthase/flavanone 3-hydroxylase OS=Eustoma grandiflorum GN=FLS PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.611e-19
Identity = 49/118 (41.53%), Postives = 73/118 (61.86%), Query Frame = 2
Query:  323 GANGPTFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVISQTDGEGRMSLASFYNPGSDAVIYPAPAL 676
            G +   +  K++ YPPCP+PDL  G+ AHTD   I +L  ++ V GLQ+ KDG W D   + ++++V++GDQ+E+++NGKYKSV HR     + + RMS   F  P  D  + P P L
Sbjct:  193 GGDDLVYLMKINYYPPCPRPDLALGV-AHTDMSAITVLVPNE-VPGLQVYKDGHWYDCKYIPNALIVHIGDQVEIMSNGKYKSVYHRTTVNKE-KTRMSWPVFLEPPPDHEVGPIPKL 307          
BLAST of CX298452 vs. ExPASy Swiss-Prot
Match: FL3H_HORVU (Naringenin,2-oxoglutarate 3-dioxygenase OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.022e-19
Identity = 50/107 (46.73%), Postives = 70/107 (65.42%), Query Frame = 2
Query:  353 VSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDG--QWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVISQTDGE-GRMSLASFYNPGSDAVIYP 664
            V+ YP CP+PDL  GL+ HTD G I LL Q D V GLQ  +DG   WI V P+  + VVNLGD    ++NG++K+ +H+ +   +GE  R+S+A+F NP  DA ++P
Sbjct:  202 VNFYPRCPQPDLTLGLKRHTDPGTITLLLQ-DLVGGLQATRDGGKNWITVQPISGAFVVNLGDHGHFMSNGRFKNADHQAV--VNGESSRLSIATFQNPAPDARVWP 305          
BLAST of CX298452 vs. ExPASy Swiss-Prot
Match: FLS1_ARATH (Flavonol synthase/flavanone 3-hydroxylase OS=Arabidopsis thaliana GN=FLS1 PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.342e-18
Identity = 46/109 (42.20%), Postives = 68/109 (62.39%), Query Frame = 2
Query:  350 KVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVISQTDGEGRMSLASFYNPGSDAVIYPAPAL 676
            K++ YPPCP+PDL  G+ AHTD  GI LL  ++ V GLQ+ KD  W D   +  +++V++GDQI  ++NG+YK+V HR     + + RMS   F  P  + ++ P P L
Sbjct:  202 KINYYPPCPRPDLALGVPAHTDLSGITLLVPNE-VPGLQVFKDDHWFDAEYIPSAVIVHIGDQILRLSNGRYKNVLHRTTVDKE-KTRMSWPVFLEPPREKIVGPLPEL 308          
BLAST of CX298452 vs. ExPASy Swiss-Prot
Match: NCS1_COPJA (S-norcoclaurine synthase 1 OS=Coptis japonica GN=NCS1 PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.136e-17
Identity = 43/94 (45.74%), Postives = 65/94 (69.15%), Query Frame = 2
Query:  395 GLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVISQTDGEGRMSLASFYNPGSDAVIYPAPAL 676
            GL  H+DA G+ LL Q ++V+GL + KD +W+ + P+  + VVN+GD IE+++NG YKS+EHR +  TD E R+S+A+F++P     I P P L
Sbjct:  224 GLSPHSDATGLTLLIQVNEVNGLHIKKDEKWVPIKPILGAFVVNIGDVIEIMSNGIYKSIEHRAVINTDKE-RLSIAAFHDPEYGTKIGPLPDL 316          
BLAST of CX298452 vs. ExPASy Swiss-Prot
Match: G3OX1_ARATH (Gibberellin 3-beta-dioxygenase 1 OS=Arabidopsis thaliana GN=GA4 PE=1 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 1.937e-17
Identity = 47/111 (42.34%), Postives = 73/111 (65.77%), Query Frame = 2
Query:  350 KVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDG-QWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRV-ISQTDGEGRMSLASFYNPGSDAVIYPAPAL 676
            ++++YP CP+PD   GL AHTD+  + +L+Q++  +GLQ+ +D   W+ VPP   S+VVN+GD   +++NG +KSV HR  ++QT    R+S+A  + P SD  I P P L
Sbjct:  213 QLNHYPVCPEPDRAMGLAAHTDSTLLTILYQNN-TAGLQVFRDDLGWVTVPPFPGSLVVNVGDLFHILSNGLFKSVLHRARVNQT--RARLSVAFLWGPQSDIKISPVPKL 320          
BLAST of CX298452 vs. ExPASy Swiss-Prot
Match: FLS_MATIN (Flavonol synthase/flavanone 3-hydroxylase (Fragment) OS=Matthiola incana PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.937e-17
Identity = 46/126 (36.51%), Postives = 72/126 (57.14%), Query Frame = 2
Query:  299 GYLKKVFHGANGPTFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVISQTDGEGRMSLASFYNPGSDAVIYPAPAL 676
            G  ++     NG  +   +++YPP P  D   GL  HTD  G+ L+  ++ + GLQ+ KD  WI+V  +  +I+VN+GDQI +++NGKYK+V H+     + + RMS     +P  D V+ P P L
Sbjct:  139 GLGREAIKEVNGCWYVMNINHYPPYPHSDSFNGLEPHTDINGLTLIITNE-IPGLQVFKDDHWIEVEYIPSAIIVNIGDQIMMLSNGKYKNVLHKTTVDKE-KTRMSWPVLVSPTYDMVVGPLPEL 262          
BLAST of CX298452 vs. ExPASy Swiss-Prot
Match: ACCH3_ARATH (1-aminocyclopropane-1-carboxylate oxidase homolog 4 OS=Arabidopsis thaliana GN=At1g06650 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.937e-17
Identity = 38/94 (40.43%), Postives = 63/94 (67.02%), Query Frame = 2
Query:  362 YPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVISQTDGEGRMSLASFYNPG 643
            YPPCP+PDL  G   H+D   + +L  D ++ GLQ+ ++G W DVP +  ++++N+GD +++ITN K+ S+EHRV++      R+S+A F+  G
Sbjct:  226 YPPCPEPDLTLGTSQHSDNSFLTVLLPD-QIEGLQVRREGHWFDVPHVSGALIINIGDLLQLITNDKFISLEHRVLANRATRARVSVACFFTTG 318          
The following BLAST results are available for this feature:
BLAST of CX298452 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
FLS_SOLTU2.703e-1941.53Flavonol synthase/flavanone 3-hydroxylase OS=Solan... [more]
ACCH1_ARATH3.530e-1948.911-aminocyclopropane-1-carboxylate oxidase homolog ... [more]
FLS_PETCR4.611e-1941.13Flavonol synthase/flavanone 3-hydroxylase OS=Petro... [more]
FLS_EUSGR4.611e-1941.53Flavonol synthase/flavanone 3-hydroxylase OS=Eusto... [more]
FL3H_HORVU6.022e-1946.73Naringenin,2-oxoglutarate 3-dioxygenase OS=Hordeum... [more]
FLS1_ARATH1.342e-1842.20Flavonol synthase/flavanone 3-hydroxylase OS=Arabi... [more]
NCS1_COPJA1.136e-1745.74S-norcoclaurine synthase 1 OS=Coptis japonica GN=N... [more]
G3OX1_ARATH1.937e-1742.34Gibberellin 3-beta-dioxygenase 1 OS=Arabidopsis th... [more]
FLS_MATIN1.937e-1736.51Flavonol synthase/flavanone 3-hydroxylase (Fragmen... [more]
ACCH3_ARATH1.937e-1740.431-aminocyclopropane-1-carboxylate oxidase homolog ... [more]

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Properties
Property NameValue
Genbank descriptionC06012D02SK RindPdig24 Citrus clementina cDNA clone C06012D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298452 ID=CX298452; Name=CX298452; organism=Citrus clementina; type=EST; length=678bp
TGAGCCGGAGTTTATGGACACAGTGGAGAGATTGACCAAGGCGCATTACA
GAAAATGTATGGAGCAAAGATTCAAGGAGCTTGTTGCAAGCAGGGCACTT
GAAGGTATCCAAACCGAGGTCAATGACATGGACTGGGAAAGCACTTTCTA
TGTGCGTCACCTCCCTCAGTCGACCATCAATGAAGTCCCAGATCTTGATG
AGGAATACAGGAAGGTGATGAAGGAATTTGCATTGAAATTGGAGAAATTA
GCAGAGGAGCTATTGGACTTGTTATGCGAGAATCTTGGATTAGAGAAGGG
GTACTTGAAAAAGGTCTTTCATGGGGCAAACGGACCAACCTTTGGTACCA
AAGTTAGCAACTACCCACCATGCCCCAAGCCAGATTTGATCAAGGGTCTC
CGGGCTCACACCGACGCCGGCGGCATCATCTTGCTCTTCCAGGATGACAA
AGTCAGTGGCCTTCAGCTTCTTAAAGATGGCCAGTGGATTGATGTGCCCC
CATTGCGCCACTCCATTGTTGTCAACCTCGGTGACCAAATTGAGGTGATC
ACCAATGGAAAGTACAAGAGTGTGGAGCACAGAGTGATTTCTCAAACCGA
CGGCGAGGGCCGGATGTCCCTAGCTTCATTCTACAATCCTGGAAGTGATG
CTGTGATCTATCCAGCACCAGCATTGCT
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