CX298452

Overview
NameCX298452
Unique NameCX298452
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length678
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX298452 vs. ExPASy Swiss-Prot
Match: LDOX_MALDO (Leucoanthocyanidin dioxygenase OS=Malus domestica GN=ANS PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.304e-17
Identity = 61/226 (26.99%), Postives = 106/226 (46.90%), Query Frame = 2
Query:    8 EFMDTVERLTKAHYRKCMEQRFKEL--VASRALEGIQTEV-----NDMDWESTFYVRHLPQST--INEVPDLDEEYRKVMXXXXXXXXXXXXXXXXXXXXXXXXXXGYLKKVFHGANGPTFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVISQTDGEGRMSLASFYNPGSDAVI 658
            E MD V +  KA +   +EQ+ K     AS  ++G  +++       ++WE  F+    P+    ++  P    +Y +                            G L+K   G        K++ YP CP+P+L  G+ AHTD   +  +  +  V GLQL  +G+W+    + +SIV+++GD +E+++NGKYKS+ HR +   + + R+S A F  P  + +I
Sbjct:   94 ELMDKVRKAGKAFFDLPIEQKEKYANDQASGKIQGYGSKLANNASGQLEWEDYFFHCVYPEDKRDLSIWPQTPADYIEATAEYAKQLRELATKVLKVLSLGLGLDEGRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILHN-MVPGLQLFYEGKWVTAKCVPNSIVMHIGDTLEILSNGKYKSILHRGMVNKE-KVRISWAVFCEPPKEKII 317          
BLAST of CX298452 vs. ExPASy Swiss-Prot
Match: GAOX2_ORYSJ (Gibberellin 20 oxidase 2 OS=Oryza sativa subsp. japonica GN=20ox2 PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.636e-17
Identity = 47/125 (37.60%), Postives = 71/125 (56.80%), Query Frame = 2
Query:  299 GYLKKVFHGANGPTFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVISQTDGEGRMSLASFYNPGSDAVIYPAPA 673
            GY ++ F  ++      + + YPPCP+P+   G   H D   + +L QDD V GL++L DG+W  V P+  ++V+N+GD    ++NG+YKS  HR +     E R SLA F  P  D V+ P P+
Sbjct:  216 GYYREFFADSSSIM---RCNYYPPCPEPERTLGTGPHCDPTALTILLQDD-VGGLEVLVDGEWRPVSPVPGAMVINIGDTFMALSNGRYKSCLHRAVVNQRRE-RRSLAFFLCPREDRVVRPPPS 335          
BLAST of CX298452 vs. ExPASy Swiss-Prot
Match: GAOX2_ORYSI (Gibberellin 20 oxidase 2 OS=Oryza sativa subsp. indica GN=20ox2 PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.636e-17
Identity = 47/125 (37.60%), Postives = 71/125 (56.80%), Query Frame = 2
Query:  299 GYLKKVFHGANGPTFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVISQTDGEGRMSLASFYNPGSDAVIYPAPA 673
            GY ++ F  ++      + + YPPCP+P+   G   H D   + +L QDD V GL++L DG+W  V P+  ++V+N+GD    ++NG+YKS  HR +     E R SLA F  P  D V+ P P+
Sbjct:  216 GYYREFFADSSSIM---RCNYYPPCPEPERTLGTGPHCDPTALTILLQDD-VGGLEVLVDGEWRPVSPVPGAMVINIGDTFMALSNGRYKSCLHRAVVNQRRE-RRSLAFFLCPREDRVVRPPPS 335          
BLAST of CX298452 vs. ExPASy Swiss-Prot
Match: LDOX_PETHY (Leucoanthocyanidin dioxygenase OS=Petunia hybrida GN=ANT17 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 9.614e-17
Identity = 44/120 (36.67%), Postives = 70/120 (58.33%), Query Frame = 2
Query:  299 GYLKKVFHGANGPTFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVISQTDGEGRMSLASFYNPGSDAVI 658
            G L+K   G        K++ YP CP+P+L  G+ AHTD   +  +  +  V GLQL  +GQW+    + +SI++++GD IE+++NGKYKS+ HR +   + + R S A F  P  + +I
Sbjct:  200 GRLEKEVGGMEDLLLQMKINYYPKCPQPELALGVEAHTDVSALTFILHN-MVPGLQLFYEGQWVTAKCVPNSIIMHIGDTIEILSNGKYKSILHRGVVNKE-KVRFSWAIFCEPPKEKII 317          
BLAST of CX298452 vs. ExPASy Swiss-Prot
Match: DV4H_CATRO (Deacetoxyvindoline 4-hydroxylase OS=Catharanthus roseus GN=D4H PE=1 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 9.614e-17
Identity = 41/88 (46.59%), Postives = 64/88 (72.73%), Query Frame = 2
Query:  362 YPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVISQTDGEGRMSLA 625
            YP CP+P+L  G   H+D+G + +L QD ++ GLQ+L + QWIDVP +  ++V+N+ D +++ITN K+KSVEHRV++   G  R+S+A
Sbjct:  253 YPACPQPELTFGTSKHSDSGFLTILMQD-QIGGLQILLENQWIDVPFIPGALVINIADLLQLITNDKFKSVEHRVLANKVGP-RISVA 338          
BLAST of CX298452 vs. ExPASy Swiss-Prot
Match: LDOX_VITVI (Leucoanthocyanidin dioxygenase OS=Vitis vinifera PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.142e-16
Identity = 44/123 (35.77%), Postives = 72/123 (58.54%), Query Frame = 2
Query:  299 GYLKKVFHGANGPTFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVISQTDGEGRMSLASFYNPGSDAVIYPA 667
            G L+K   G        K++ YP CP+P+L  G+ AHTD   +  +  +  V GLQL  +G+W+    + +SI++++GD IE+++NGKYKS+ HR +   + + R+S A F  P  + +I  A
Sbjct:  202 GRLEKEVGGMEELLLQKKINYYPKCPQPELALGVEAHTDVSALTFILHN-MVPGLQLFYEGKWVTAKCVPNSIIMHIGDTIEILSNGKYKSILHRGLVNKE-KVRISWAVFCEPPKEKIILKA 322          
BLAST of CX298452 vs. ExPASy Swiss-Prot
Match: G3OX2_ARATH (Gibberellin 3-beta-dioxygenase 2 OS=Arabidopsis thaliana GN=GA4H PE=1 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 2.797e-16
Identity = 48/123 (39.02%), Postives = 73/123 (59.35%), Query Frame = 2
Query:  323 GANGPTFGTK----VSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDG-QWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVISQTDGEGRMSLASFYNPGSDAVIYPAPAL 676
            G N    GT+    +++YP CP+PD   GL AHTD+  + +L+Q++  +GLQ+ +D   W+  PP+  S+VVN+GD + ++TNG + SV HR         R S+A  + P SD +I P P L
Sbjct:  193 GPNSDFQGTQAVIQLNHYPKCPEPDRAMGLAAHTDSTLMTILYQNN-TAGLQVFRDDVGWVTAPPVPGSLVVNVGDLLHILTNGIFPSVLHRA-RVNHVRSRFSMAYLWGPPSDIMISPLPKL 313          
BLAST of CX298452 vs. ExPASy Swiss-Prot
Match: ACCH2_ARATH (1-aminocyclopropane-1-carboxylate oxidase homolog 2 OS=Arabidopsis thaliana GN=At1g06640 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.797e-16
Identity = 35/92 (38.04%), Postives = 62/92 (67.39%), Query Frame = 2
Query:  362 YPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVISQTDGEGRMSLASFYN 637
            +PPCP+PDL  G   H+D G  + +   D + GLQ+ ++G W DVP +  ++++N+GD +++ITN K+ S++HRV++      R+S+A F++
Sbjct:  226 FPPCPEPDLTFGTSKHSD-GSFLTVLLPDNIEGLQVCREGYWFDVPHVPGALIINIGDLLQLITNDKFISLKHRVLANRATRARVSVACFFH 316          
BLAST of CX298452 vs. ExPASy Swiss-Prot
Match: GSL_ARATH (Probable 2-oxoacid dependent dioxygenase OS=Arabidopsis thaliana GN=GSL-OH PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.772e-16
Identity = 38/91 (41.76%), Postives = 61/91 (67.03%), Query Frame = 2
Query:  362 YPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVISQTDGEGRMSLASFY 634
            +PPCP+P+   G   HTD   + +L  D+   GLQ+L DG WIDVPP   +++ N+GD +++I+N K+ S+EHR+++    E R+S+A F+
Sbjct:  216 FPPCPEPNRTFGGAQHTDRSFLTILLNDNN-GGLQVLYDGYWIDVPPNPEALIFNVGDFLQLISNDKFVSMEHRILANGGEEPRISVACFF 305          
BLAST of CX298452 vs. ExPASy Swiss-Prot
Match: LDOX_ARATH (Leucoanthocyanidin dioxygenase OS=Arabidopsis thaliana GN=LDOX PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.139e-16
Identity = 44/125 (35.20%), Postives = 72/125 (57.60%), Query Frame = 2
Query:  305 LKKVFHGANGPTFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVISQTDGEGRMSLASFYNPGSDAVIY-PAPAL 676
            L+K   G        K++ YP CP+P+L  G+ AHTD   +  +  +  V GLQL  +G+W+    +  SIV+++GD +E+++NGKYKS+ HR +   + + R+S A F  P  D ++  P P +
Sbjct:  198 LEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILHN-MVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKE-KVRISWAVFCEPPKDKIVLKPLPEM 320          
The following BLAST results are available for this feature:
BLAST of CX298452 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
LDOX_MALDO3.304e-1726.99Leucoanthocyanidin dioxygenase OS=Malus domestica ... [more]
GAOX2_ORYSJ5.636e-1737.60Gibberellin 20 oxidase 2 OS=Oryza sativa subsp. ja... [more]
GAOX2_ORYSI5.636e-1737.60Gibberellin 20 oxidase 2 OS=Oryza sativa subsp. in... [more]
LDOX_PETHY9.614e-1736.67Leucoanthocyanidin dioxygenase OS=Petunia hybrida ... [more]
DV4H_CATRO9.614e-1746.59Deacetoxyvindoline 4-hydroxylase OS=Catharanthus r... [more]
LDOX_VITVI2.142e-1635.77Leucoanthocyanidin dioxygenase OS=Vitis vinifera P... [more]
G3OX2_ARATH2.797e-1639.02Gibberellin 3-beta-dioxygenase 2 OS=Arabidopsis th... [more]
ACCH2_ARATH2.797e-1638.041-aminocyclopropane-1-carboxylate oxidase homolog ... [more]
GSL_ARATH4.772e-1641.76Probable 2-oxoacid dependent dioxygenase OS=Arabid... [more]
LDOX_ARATH8.139e-1635.20Leucoanthocyanidin dioxygenase OS=Arabidopsis thal... [more]

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Properties
Property NameValue
Genbank descriptionC06012D02SK RindPdig24 Citrus clementina cDNA clone C06012D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298452 ID=CX298452; Name=CX298452; organism=Citrus clementina; type=EST; length=678bp
TGAGCCGGAGTTTATGGACACAGTGGAGAGATTGACCAAGGCGCATTACA
GAAAATGTATGGAGCAAAGATTCAAGGAGCTTGTTGCAAGCAGGGCACTT
GAAGGTATCCAAACCGAGGTCAATGACATGGACTGGGAAAGCACTTTCTA
TGTGCGTCACCTCCCTCAGTCGACCATCAATGAAGTCCCAGATCTTGATG
AGGAATACAGGAAGGTGATGAAGGAATTTGCATTGAAATTGGAGAAATTA
GCAGAGGAGCTATTGGACTTGTTATGCGAGAATCTTGGATTAGAGAAGGG
GTACTTGAAAAAGGTCTTTCATGGGGCAAACGGACCAACCTTTGGTACCA
AAGTTAGCAACTACCCACCATGCCCCAAGCCAGATTTGATCAAGGGTCTC
CGGGCTCACACCGACGCCGGCGGCATCATCTTGCTCTTCCAGGATGACAA
AGTCAGTGGCCTTCAGCTTCTTAAAGATGGCCAGTGGATTGATGTGCCCC
CATTGCGCCACTCCATTGTTGTCAACCTCGGTGACCAAATTGAGGTGATC
ACCAATGGAAAGTACAAGAGTGTGGAGCACAGAGTGATTTCTCAAACCGA
CGGCGAGGGCCGGATGTCCCTAGCTTCATTCTACAATCCTGGAAGTGATG
CTGTGATCTATCCAGCACCAGCATTGCT
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