CX298452

Overview
NameCX298452
Unique NameCX298452
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length678
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX298452 vs. ExPASy Swiss-Prot
Match: G2OX_PHACN (Gibberellin 2-beta-dioxygenase OS=Phaseolus coccineus GN=GA2OX1 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.139e-16
Identity = 44/114 (38.60%), Postives = 71/114 (62.28%), Query Frame = 2
Query:  350 KVSNYPPCPKPDLIK----GLRAHTDAGGIILLFQDDKVSGLQL-LKDGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVISQTDGEGRMSLASFYNPGSDAVIYPAPAL 676
            ++++YPPCP+   +     G   HTD   II + + +  SGLQ+ L DG W+ VPP + S  +N+GD ++V+TNG++KSV+HRV++ T  + R+S+  F  P     I P P++
Sbjct:  181 RLNHYPPCPEVQALNRNLVGFGEHTDPQ-IISVLRSNSTSGLQICLTDGTWVSVPPDQTSFFINVGDALQVMTNGRFKSVKHRVLADTT-KSRLSMIYFGGPALSENIAPLPSV 292          
BLAST of CX298452 vs. ExPASy Swiss-Prot
Match: LDOX_PERFR (Leucoanthocyanidin dioxygenase OS=Perilla frutescens GN=ANS PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.039e-15
Identity = 41/120 (34.17%), Postives = 70/120 (58.33%), Query Frame = 2
Query:  299 GYLKKVFHGANGPTFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVISQTDGEGRMSLASFYNPGSDAVI 658
            G L+K   GA       K++ YP CP+P+L  G  AHTD   +  +  +  V GLQL  + +W+    + +SI++++GD +E+++NGKYKS+ HR +   + + R+S A F  P  + ++
Sbjct:  202 GRLEKEVGGAEDLIVQMKINFYPKCPQPELALGWEAHTDVSALTFILHN-MVPGLQLFYEDKWVTAKCVPNSIIMHIGDTLEILSNGKYKSILHRGLVNKE-KVRISWAVFCEPPKEKIV 319          
BLAST of CX298452 vs. ExPASy Swiss-Prot
Match: GAOX3_ARATH (Gibberellin 20 oxidase 3 OS=Arabidopsis thaliana GN=20ox3 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.039e-15
Identity = 41/109 (37.61%), Postives = 62/109 (56.88%), Query Frame = 2
Query:  350 KVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVISQTDGEGRMSLASFYNPGSDAVIYPAPAL 676
            +++ YP C +P+L  G   H D   + +L QD +V GLQ+  D +W  +PP  H+ VVN+GD    +TNG+YKS  HR +  ++ E R + A F  P  + V+ P   L
Sbjct:  227 RLNYYPQCKQPELALGTGPHCDPTSLTILHQD-QVGGLQVFVDNKWQSIPPNPHAFVVNIGDTFMALTNGRYKSCLHRAVVNSERE-RKTFAFFLCPKGEKVVKPPEEL 333          
BLAST of CX298452 vs. ExPASy Swiss-Prot
Match: IDS3_HORVU (2'-deoxymugineic-acid 2'-dioxygenase OS=Hordeum vulgare GN=IDS3 PE=1 SV=3)

HSP 1 Score: 80.4925 bits (197), Expect = 8.999e-15
Identity = 43/105 (40.95%), Postives = 61/105 (58.10%), Query Frame = 2
Query:  353 VSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVISQTDGEGRMSLASFYNPGSDAVIYPA 667
            +++YP CP PD   G   H D   I LL     V+GL++   G WI V P  ++ VVN G Q+EV+TNG  KS+EHR ++ +    R S+A+F  P  + +I PA
Sbjct:  191 INHYPSCPNPDKALGQPPHCDRNLITLLLPG-AVNGLEVSYKGDWIKVDPAPNAFVVNFGQQLEVVTNGLLKSIEHRAMTNS-ALARTSVATFIMPTQECLIGPA 293          
BLAST of CX298452 vs. ExPASy Swiss-Prot
Match: IDS2_HORVU (Mugineic-acid 3-dioxygenase OS=Hordeum vulgare GN=IDS2 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 8.999e-15
Identity = 44/105 (41.90%), Postives = 61/105 (58.10%), Query Frame = 2
Query:  353 VSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVISQTDGEGRMSLASFYNPGSDAVIYPA 667
            ++ YPP P P    GL  H D   + +L     V GL++   G WI V P+ +S+V+N G Q+EV+TNG  K+VEHR  +    E R+S+ASF  P  D V+ PA
Sbjct:  190 INYYPPSPNPSRTLGLPPHCDRDLMTVLLPG-AVPGLEIAYKGGWIKVQPVPNSLVINFGLQLEVVTNGYLKAVEHRAATNF-AEPRLSVASFIVPADDCVVGPA 292          
BLAST of CX298452 vs. ExPASy Swiss-Prot
Match: GAOX1_ARATH (Gibberellin 20 oxidase 1 OS=Arabidopsis thaliana GN=20ox1 PE=2 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.175e-14
Identity = 42/105 (40.00%), Postives = 60/105 (57.14%), Query Frame = 2
Query:  350 KVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVISQTDGEGRMSLASFYNPGSDAVIYP 664
            +++ YPPC KPDL  G   H D   + +L QD  V+GLQ+  + QW  + P   + VVN+GD    ++N +YKS  HR +  ++ E R SLA F  P  D V+ P
Sbjct:  228 RLNYYPPCIKPDLTLGTGPHCDPTSLTILHQDH-VNGLQVFVENQWRSIRPNPKAFVVNIGDTFMALSNDRYKSCLHRAVVNSESE-RKSLAFFLCPKKDRVVTP 330          
BLAST of CX298452 vs. ExPASy Swiss-Prot
Match: G2OX1_PEA (Gibberellin 2-beta-dioxygenase 1 OS=Pisum sativum GN=GA2OX1 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.618e-14
Identity = 44/114 (38.60%), Postives = 68/114 (59.65%), Query Frame = 2
Query:  350 KVSNYPPCPKPDL----IKGLRAHTDAGGIILLFQDDKVSGLQL-LKDGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVISQTDGEGRMSLASFYNPGSDAVIYPAPAL 676
            +V++YP CP+  +    + G   HTD   II + + +  SG Q+ L+DG WI VPP   S  +N+GD ++V+TNG++KSV HRV++    + R+S+  F  P     I P P+L
Sbjct:  177 RVNHYPACPELAINGENLIGFGEHTDPQ-IISILRSNNTSGFQISLRDGSWISVPPDHSSFFINVGDSLQVMTNGRFKSVRHRVLA-NGIDPRLSMIYFCGPPLSEKIAPLPSL 288          
BLAST of CX298452 vs. ExPASy Swiss-Prot
Match: GAOX2_ARATH (Gibberellin 20 oxidase 2 OS=Arabidopsis thaliana GN=20ox2 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.833e-14
Identity = 40/105 (38.10%), Postives = 58/105 (55.24%), Query Frame = 2
Query:  350 KVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVISQTDGEGRMSLASFYNPGSDAVIYP 664
            ++++YPPC  PDL  G   H D   + +L QD  V+GLQ+  D QW  + P   + VVN+GD    ++NG +KS  HR +   +   R S+A F  P  D V+ P
Sbjct:  226 RLNHYPPCQTPDLTLGTGPHCDPSSLTILHQDH-VNGLQVFVDNQWQSIRPNPKAFVVNIGDTFMALSNGIFKSCLHRAVVNRE-SARKSMAFFLCPKKDKVVKP 328          
BLAST of CX298452 vs. ExPASy Swiss-Prot
Match: G3O22_WHEAT (Gibberellin 3-beta-dioxygenase 2-2 OS=Triticum aestivum GN=GA3ox2-2 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.618e-14
Identity = 41/103 (39.81%), Postives = 60/103 (58.25%), Query Frame = 2
Query:  362 YPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDG--QWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVISQTDGEGRMSLASFYNPGSDAVIYP 664
            YP CP P    GL AHTD+G    + Q   V GLQL + G  +W+ VP +  ++VVN+GD  +++TNG++ SV HR +   D + R+SL  F  P +   + P
Sbjct:  214 YPKCPDPKRALGLIAHTDSGFFTFVLQS-LVPGLQLFRHGPDRWVTVPAVPGAMVVNVGDLFQILTNGRFHSVYHRAVVNRDSD-RISLGYFLGPPAHVKVAP 314          
BLAST of CX298452 vs. ExPASy Swiss-Prot
Match: G3O21_WHEAT (Gibberellin 3-beta-dioxygenase 2-1 OS=Triticum aestivum GN=GA3ox2-1 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.618e-14
Identity = 41/103 (39.81%), Postives = 60/103 (58.25%), Query Frame = 2
Query:  362 YPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDG--QWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVISQTDGEGRMSLASFYNPGSDAVIYP 664
            YP CP P    GL AHTD+G    + Q   V GLQL + G  +W+ VP +  ++VVN+GD  +++TNG++ SV HR +   D + R+SL  F  P +   + P
Sbjct:  214 YPKCPDPKRALGLIAHTDSGFFTFVLQS-LVPGLQLFRHGPDRWVTVPAVPGAMVVNVGDLFQILTNGRFHSVYHRAVVNRDSD-RISLGYFLGPPAHVKVAP 314          
The following BLAST results are available for this feature:
BLAST of CX298452 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
G2OX_PHACN8.139e-1638.60Gibberellin 2-beta-dioxygenase OS=Phaseolus coccin... [more]
LDOX_PERFR4.039e-1534.17Leucoanthocyanidin dioxygenase OS=Perilla frutesce... [more]
GAOX3_ARATH4.039e-1537.61Gibberellin 20 oxidase 3 OS=Arabidopsis thaliana G... [more]
IDS3_HORVU8.999e-1540.952'-deoxymugineic-acid 2'-dioxygenase OS=Hordeum vu... [more]
IDS2_HORVU8.999e-1541.90Mugineic-acid 3-dioxygenase OS=Hordeum vulgare GN=... [more]
GAOX1_ARATH1.175e-1440.00Gibberellin 20 oxidase 1 OS=Arabidopsis thaliana G... [more]
G2OX1_PEA2.618e-1438.60Gibberellin 2-beta-dioxygenase 1 OS=Pisum sativum ... [more]
GAOX2_ARATH5.833e-1438.10Gibberellin 20 oxidase 2 OS=Arabidopsis thaliana G... [more]
G3O22_WHEAT7.618e-1439.81Gibberellin 3-beta-dioxygenase 2-2 OS=Triticum aes... [more]
G3O21_WHEAT7.618e-1439.81Gibberellin 3-beta-dioxygenase 2-1 OS=Triticum aes... [more]

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Properties
Property NameValue
Genbank descriptionC06012D02SK RindPdig24 Citrus clementina cDNA clone C06012D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298452 ID=CX298452; Name=CX298452; organism=Citrus clementina; type=EST; length=678bp
TGAGCCGGAGTTTATGGACACAGTGGAGAGATTGACCAAGGCGCATTACA
GAAAATGTATGGAGCAAAGATTCAAGGAGCTTGTTGCAAGCAGGGCACTT
GAAGGTATCCAAACCGAGGTCAATGACATGGACTGGGAAAGCACTTTCTA
TGTGCGTCACCTCCCTCAGTCGACCATCAATGAAGTCCCAGATCTTGATG
AGGAATACAGGAAGGTGATGAAGGAATTTGCATTGAAATTGGAGAAATTA
GCAGAGGAGCTATTGGACTTGTTATGCGAGAATCTTGGATTAGAGAAGGG
GTACTTGAAAAAGGTCTTTCATGGGGCAAACGGACCAACCTTTGGTACCA
AAGTTAGCAACTACCCACCATGCCCCAAGCCAGATTTGATCAAGGGTCTC
CGGGCTCACACCGACGCCGGCGGCATCATCTTGCTCTTCCAGGATGACAA
AGTCAGTGGCCTTCAGCTTCTTAAAGATGGCCAGTGGATTGATGTGCCCC
CATTGCGCCACTCCATTGTTGTCAACCTCGGTGACCAAATTGAGGTGATC
ACCAATGGAAAGTACAAGAGTGTGGAGCACAGAGTGATTTCTCAAACCGA
CGGCGAGGGCCGGATGTCCCTAGCTTCATTCTACAATCCTGGAAGTGATG
CTGTGATCTATCCAGCACCAGCATTGCT
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