CX298452

Overview
NameCX298452
Unique NameCX298452
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length678
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX298452 vs. ExPASy Swiss-Prot
Match: G3O23_WHEAT (Gibberellin 3-beta-dioxygenase 2-3 OS=Triticum aestivum GN=GA3ox2-3 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.216e-13
Identity = 40/103 (38.83%), Postives = 60/103 (58.25%), Query Frame = 2
Query:  362 YPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDG--QWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVISQTDGEGRMSLASFYNPGSDAVIYP 664
            YP CP P    GL AHTD+G    + Q   V GLQL + G  +W+ VP +  ++VVN+GD  +++TNG++ SV HR +   + + R+SL  F  P +   + P
Sbjct:  214 YPKCPDPKRALGLIAHTDSGFFTFVLQS-LVPGLQLFRHGPDRWVTVPAVPGAMVVNVGDLFQILTNGRFHSVYHRAVVNRESD-RISLGYFLGPPAHVKVAP 314          
BLAST of CX298452 vs. ExPASy Swiss-Prot
Match: G2OX1_ARATH (Gibberellin 2-beta-dioxygenase 1 OS=Arabidopsis thaliana GN=GA2OX1 PE=2 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 2.895e-13
Identity = 44/117 (37.61%), Postives = 65/117 (55.56%), Query Frame = 2
Query:  350 KVSNYPPCPKPDL-------IKGLRAHTDAGGIILLFQDDKVSGLQL-LKDGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVISQTDGEGRMSLASFYNPGSDAVIYPAPAL 676
            ++++YPPCP  +        + G   HTD   II + + +  SGLQ+ L DG WI VPP   S   N+GD ++V+TNG++KSV HRV++    + R+S+  F  P     I P   L
Sbjct:  171 RLNHYPPCPLSNKKTNGGKNVIGFGEHTDPQ-IISVLRSNNTSGLQINLNDGSWISVPPDHTSFFFNVGDSLQVMTNGRFKSVRHRVLANCK-KSRVSMIYFAGPSLTQRIAPLTCL 285          
BLAST of CX298452 vs. ExPASy Swiss-Prot
Match: LDOX_MAIZE (Leucoanthocyanidin dioxygenase OS=Zea mays GN=A2 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.781e-13
Identity = 39/110 (35.45%), Postives = 65/110 (59.09%), Query Frame = 2
Query:  350 KVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVISQTDGEGRMSLASFYNPGSDAV-IYPAPAL 676
            K++ YP CP+P+L  G+ AHTD   +  +  +  V GLQ+L   +W+       +I+V++GD +E+++NG+Y SV HR +   +   R+S   F  P  D+V ++P P L
Sbjct:  235 KINYYPRCPQPELAVGVEAHTDVSALSFILHNG-VPGLQVLHGARWVTARHEPGTIIVHVGDALEILSNGRYTSVLHRGLVNREAV-RISWVVFCEPPPDSVLLHPLPEL 342          
BLAST of CX298452 vs. ExPASy Swiss-Prot
Match: G2OX7_ARATH (Gibberellin 2-beta-dioxygenase 7 OS=Arabidopsis thaliana GN=GA2OX7 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.449e-13
Identity = 40/97 (41.24%), Postives = 59/97 (60.82%), Query Frame = 2
Query:  350 KVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVISQTDGEGRMSLASFYNP 640
            +++ Y P      + GL  HTD   + +L QD ++ GL+L  +GQWI V P   ++ VN+GD  + ++NG Y+SV HRVIS  + E RMS+A F  P
Sbjct:  197 RLNKYHPSVFGSEVFGLVPHTDTSFLTILSQD-QIGGLELENNGQWISVKPCLEALTVNIGDMFQALSNGVYQSVRHRVISPANIE-RMSIAFFVCP 291          
BLAST of CX298452 vs. ExPASy Swiss-Prot
Match: GAO1B_WHEAT (Gibberellin 20 oxidase 1-B OS=Triticum aestivum GN=GA20ox1B PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.876e-12
Identity = 40/109 (36.70%), Postives = 59/109 (54.13%), Query Frame = 2
Query:  350 KVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVISQTDGEGRMSLASFYNPGSDAVIYPAPAL 676
            +++ YPPC +P    G   H D   + +L QD+ V GLQ+  +G+W  + P   + VVN+GD    ++NG+YKS  HR +  +    R SLA F  P  D V+ P   L
Sbjct:  205 RLNYYPPCQRPMETLGTGPHCDPTSLTILHQDN-VGGLQVHTEGRWRSIRPRADAFVVNIGDTFMALSNGRYKSCLHRAVVNSK-VPRKSLAFFLCPEMDKVVAPPGTL 311          
BLAST of CX298452 vs. ExPASy Swiss-Prot
Match: G2OX2_ARATH (Gibberellin 2-beta-dioxygenase 2 OS=Arabidopsis thaliana GN=GA2OX2 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.876e-12
Identity = 42/113 (37.17%), Postives = 68/113 (60.18%), Query Frame = 2
Query:  350 KVSNYPPCPKP--DLIK-GLRAHTDAGGIILLFQDDKVSGLQL-LKDGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVISQTDGEGRMSLASFYNPGSDAVIYPAPAL 676
            ++++YP   +    ++K G   HTD   II + + +  +GLQ+ +KDG W+ VPP   S  +N+GD ++V+TNG++KSV+HRV++ T    R+S+  F  P     I P P L
Sbjct:  185 RLNHYPAAEEEAEKMVKVGFGEHTDPQ-IISVLRSNNTAGLQICVKDGSWVAVPPDHSSFFINVGDALQVMTNGRFKSVKHRVLADT-RRSRISMIYFGGPPLSQKIAPLPCL 295          
BLAST of CX298452 vs. ExPASy Swiss-Prot
Match: HY6H_HYONI (Hyoscyamine 6-dioxygenase OS=Hyoscyamus niger GN=H6H PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.451e-12
Identity = 44/107 (41.12%), Postives = 59/107 (55.14%), Query Frame = 2
Query:  362 YPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQ--LLKDGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVISQTDGEGRMSLASFYNPGSDAVIYPAPAL 676
            YPPCP P    G   H D   I LL QD  + GLQ  ++KD  WI V P+  + VVNLG  ++VITN K++   HRV++    + R+S+A+   P     I PA  L
Sbjct:  202 YPPCPDPSSTLGSGGHYDGNLITLLQQD--LPGLQQLIVKDATWIAVQPIPTAFVVNLGLTLKVITNEKFEGSIHRVVTDPTRD-RVSIATLIGPDYSCTIEPAKEL 305          
BLAST of CX298452 vs. ExPASy Swiss-Prot
Match: GAO1D_WHEAT (Gibberellin 20 oxidase 1-D OS=Triticum aestivum GN=GA20ox1D PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.201e-12
Identity = 40/109 (36.70%), Postives = 59/109 (54.13%), Query Frame = 2
Query:  350 KVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVISQTDGEGRMSLASFYNPGSDAVIYPAPAL 676
            +++ YPPC +P    G   H D   + +L QD+ V GLQ+  +G+W  + P   + VVN+GD    ++NG+YKS  HR +  +    R SLA F  P  D V+ P   L
Sbjct:  205 RLNYYPPCQRPLETLGTGPHCDPTSLTILHQDN-VGGLQVHTEGRWRSIRPRADAFVVNIGDTFMALSNGRYKSCLHRAVVNS-RVPRKSLAFFLCPEMDKVVAPPGTL 311          
BLAST of CX298452 vs. ExPASy Swiss-Prot
Match: GAO1A_WHEAT (Gibberellin 20 oxidase 1-A OS=Triticum aestivum GN=GA20ox1A PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.201e-12
Identity = 40/109 (36.70%), Postives = 59/109 (54.13%), Query Frame = 2
Query:  350 KVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVISQTDGEGRMSLASFYNPGSDAVIYPAPAL 676
            +++ YPPC +P    G   H D   + +L QD+ V GLQ+  +G+W  + P   + VVN+GD    ++NG+YKS  HR +  +    R SLA F  P  D V+ P   L
Sbjct:  205 RLNYYPPCQRPLETLGTGPHCDPTSLTILHQDN-VGGLQVHTEGRWRSIRPRADAFVVNIGDTFMALSNGRYKSCLHRAVVNS-RVPRKSLAFFLCPEMDKVVAPPGTL 311          
BLAST of CX298452 vs. ExPASy Swiss-Prot
Match: G3OX4_ARATH (Gibberellin 3-beta-dioxygenase 4 OS=Arabidopsis thaliana GN=At1g80330 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.622e-11
Identity = 40/112 (35.71%), Postives = 64/112 (57.14%), Query Frame = 2
Query:  350 KVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLK-DGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRV-ISQTDGEGRMSLASFY-NPGSDAVIYPAPAL 676
            ++++YP CP+P+   GL AHTD+  + +L Q +   GLQ+ + +  W+ V P    +VVN+GD   +++NGK  SV HR  ++ T    R+S+A  +  P  D  I P   L
Sbjct:  208 RLNHYPVCPEPERAMGLAAHTDSTILTILHQSN-TGGLQVFREESGWVTVEPAPGVLVVNIGDLFHILSNGKIPSVVHRAKVNHT--RSRISIAYLWGGPAGDVQIAPISKL 316          
The following BLAST results are available for this feature:
BLAST of CX298452 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
G3O23_WHEAT2.216e-1338.83Gibberellin 3-beta-dioxygenase 2-3 OS=Triticum aes... [more]
G2OX1_ARATH2.895e-1337.61Gibberellin 2-beta-dioxygenase 1 OS=Arabidopsis th... [more]
LDOX_MAIZE3.781e-1335.45Leucoanthocyanidin dioxygenase OS=Zea mays GN=A2 P... [more]
G2OX7_ARATH6.449e-1341.24Gibberellin 2-beta-dioxygenase 7 OS=Arabidopsis th... [more]
GAO1B_WHEAT1.876e-1236.70Gibberellin 20 oxidase 1-B OS=Triticum aestivum GN... [more]
G2OX2_ARATH1.876e-1237.17Gibberellin 2-beta-dioxygenase 2 OS=Arabidopsis th... [more]
HY6H_HYONI2.451e-1241.12Hyoscyamine 6-dioxygenase OS=Hyoscyamus niger GN=H... [more]
GAO1D_WHEAT3.201e-1236.70Gibberellin 20 oxidase 1-D OS=Triticum aestivum GN... [more]
GAO1A_WHEAT3.201e-1236.70Gibberellin 20 oxidase 1-A OS=Triticum aestivum GN... [more]
G3OX4_ARATH4.622e-1135.71Gibberellin 3-beta-dioxygenase 4 OS=Arabidopsis th... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC06012D02SK RindPdig24 Citrus clementina cDNA clone C06012D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298452 ID=CX298452; Name=CX298452; organism=Citrus clementina; type=EST; length=678bp
TGAGCCGGAGTTTATGGACACAGTGGAGAGATTGACCAAGGCGCATTACA
GAAAATGTATGGAGCAAAGATTCAAGGAGCTTGTTGCAAGCAGGGCACTT
GAAGGTATCCAAACCGAGGTCAATGACATGGACTGGGAAAGCACTTTCTA
TGTGCGTCACCTCCCTCAGTCGACCATCAATGAAGTCCCAGATCTTGATG
AGGAATACAGGAAGGTGATGAAGGAATTTGCATTGAAATTGGAGAAATTA
GCAGAGGAGCTATTGGACTTGTTATGCGAGAATCTTGGATTAGAGAAGGG
GTACTTGAAAAAGGTCTTTCATGGGGCAAACGGACCAACCTTTGGTACCA
AAGTTAGCAACTACCCACCATGCCCCAAGCCAGATTTGATCAAGGGTCTC
CGGGCTCACACCGACGCCGGCGGCATCATCTTGCTCTTCCAGGATGACAA
AGTCAGTGGCCTTCAGCTTCTTAAAGATGGCCAGTGGATTGATGTGCCCC
CATTGCGCCACTCCATTGTTGTCAACCTCGGTGACCAAATTGAGGTGATC
ACCAATGGAAAGTACAAGAGTGTGGAGCACAGAGTGATTTCTCAAACCGA
CGGCGAGGGCCGGATGTCCCTAGCTTCATTCTACAATCCTGGAAGTGATG
CTGTGATCTATCCAGCACCAGCATTGCT
back to top