CX298457

Overview
NameCX298457
Unique NameCX298457
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length518
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX298457 vs. ExPASy Swiss-Prot
Match: GLNA3_HORVU (Glutamine synthetase OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 1.216e-40
Identity = 78/92 (84.78%), Postives = 85/92 (92.39%), Query Frame = 3
Query:    6 VIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 281
            VI  A+EKL  +H EHIAAYGEGNERRLTG+HETADINT SWGVANRGAS+RVGR+TE+ GKGYFEDRRPASNMDPYVVTSMIA+TTILWKP
Sbjct:  265 VIVDAVEKLKLKHKEHIAAYGEGNERRLTGKHETADINTSSWGVANRGASVRVGRETEQNGKGYFEDRRPASNMDPYVVTSMIAQTTILWKP 356          
BLAST of CX298457 vs. ExPASy Swiss-Prot
Match: GLN15_ARATH (Glutamine synthetase cytosolic isozyme 1-5 OS=Arabidopsis thaliana GN=GLN1-5 PE=2 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 3.539e-40
Identity = 77/90 (85.56%), Postives = 87/90 (96.67%), Query Frame = 3
Query:    3 DVIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTIL 272
            D+IK+AI+KL  +H +HIAAYGEGNERRLTG+HETADINTFSWGVA+RGAS+RVGRDTEKEGKGYFEDRRP+SNMDPY+VTSMIAETTIL
Sbjct:  264 DLIKEAIKKLEVKHKQHIAAYGEGNERRLTGKHETADINTFSWGVADRGASVRVGRDTEKEGKGYFEDRRPSSNMDPYLVTSMIAETTIL 353          
BLAST of CX298457 vs. ExPASy Swiss-Prot
Match: GLNA4_PHAVU (Glutamine synthetase leaf isozyme, chloroplastic OS=Phaseolus vulgaris PE=2 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 6.037e-40
Identity = 76/93 (81.72%), Postives = 84/93 (90.32%), Query Frame = 3
Query:    3 DVIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 281
            +VIKKAI  L  RH EHI+AYGEGNERRLTG+HETA INTFSWGVANRG SIRVGRDTEK GKGY EDRRPASNMDPYVVTS++AE+T+LW+P
Sbjct:  321 EVIKKAILNLSLRHKEHISAYGEGNERRLTGKHETASINTFSWGVANRGCSIRVGRDTEKNGKGYLEDRRPASNMDPYVVTSLLAESTLLWEP 413          
BLAST of CX298457 vs. ExPASy Swiss-Prot
Match: GLNA_NICPL (Glutamine synthetase OS=Nicotiana plumbaginifolia PE=2 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 7.885e-40
Identity = 77/92 (83.70%), Postives = 86/92 (93.48%), Query Frame = 3
Query:    3 DVIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWK 278
            +VI KAIEKLG +H EHIAAYGEGNERRLTG+HETA+I+TF WGVANRGAS+RVGRDTEK GKGYFEDRRPASNMDPYVVT+MIA+TTI+ K
Sbjct:  264 EVILKAIEKLGLKHKEHIAAYGEGNERRLTGKHETANISTFKWGVANRGASVRVGRDTEKAGKGYFEDRRPASNMDPYVVTAMIADTTIIGK 355          
BLAST of CX298457 vs. ExPASy Swiss-Prot
Match: GLNA1_DAUCA (Glutamine synthetase cytosolic isozyme OS=Daucus carota GN=GLN1 PE=2 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 2.294e-39
Identity = 76/90 (84.44%), Postives = 84/90 (93.33%), Query Frame = 3
Query:    3 DVIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTIL 272
            ++IKKAI KL  +H +HIAAYGEGNERRLTG+HETA I+ FSWGVANRGAS+RVGRDTEKEGKGYFEDRRPASNM+PYVVTSMIAETTIL
Sbjct:  263 EIIKKAIAKLETKHAQHIAAYGEGNERRLTGKHETASIHKFSWGVANRGASVRVGRDTEKEGKGYFEDRRPASNMEPYVVTSMIAETTIL 352          
BLAST of CX298457 vs. ExPASy Swiss-Prot
Match: GLNAC_BRANA (Glutamine synthetase, chloroplastic OS=Brassica napus GN=GLN2 PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 5.111e-39
Identity = 74/93 (79.57%), Postives = 84/93 (90.32%), Query Frame = 3
Query:    3 DVIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 281
            +VIKKAI  L  RH EHI+AYGEGNERRLTG+HETA I+ FSWGVANRG SIRVGRDTEK+GKGY EDRRPASNMDPY+VTS++AETT+LW+P
Sbjct:  320 EVIKKAILNLSLRHMEHISAYGEGNERRLTGKHETASIDQFSWGVANRGCSIRVGRDTEKKGKGYLEDRRPASNMDPYIVTSLLAETTLLWEP 412          
BLAST of CX298457 vs. ExPASy Swiss-Prot
Match: GLNA2_DAUCA (Glutamine synthetase, chloroplastic OS=Daucus carota GN=GLN2 PE=2 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 6.675e-39
Identity = 74/93 (79.57%), Postives = 84/93 (90.32%), Query Frame = 3
Query:    3 DVIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 281
            +VIKKAI  L  RH EHI+AYGEGNERRLTG+HETA I++FSWGVA+RG SIRVGRDTEKEGKGY EDRRPASNMDPYVVT ++AETT+LW+P
Sbjct:  324 EVIKKAILNLSLRHKEHISAYGEGNERRLTGKHETASIDSFSWGVADRGCSIRVGRDTEKEGKGYLEDRRPASNMDPYVVTGLLAETTLLWEP 416          
BLAST of CX298457 vs. ExPASy Swiss-Prot
Match: GLNA2_MEDSA (Glutamine synthetase leaf isozyme, chloroplastic OS=Medicago sativa GN=GS2 PE=2 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 1.487e-38
Identity = 74/93 (79.57%), Postives = 82/93 (88.17%), Query Frame = 3
Query:    3 DVIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 281
            +VIKKAI  L  RH  HI AYGEGNERRLTG+HETA INTFSWGVANRG SIRVGRDTEK GKGY EDRRPASNMDPYVVT+++AE+T+LW+P
Sbjct:  320 EVIKKAILNLSLRHKVHIEAYGEGNERRLTGKHETASINTFSWGVANRGCSIRVGRDTEKNGKGYLEDRRPASNMDPYVVTALLAESTLLWEP 412          
BLAST of CX298457 vs. ExPASy Swiss-Prot
Match: GLNA2_ARATH (Glutamine synthetase, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=GLN2 PE=1 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 1.942e-38
Identity = 73/93 (78.49%), Postives = 83/93 (89.25%), Query Frame = 3
Query:    3 DVIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 281
            +VIKKAI  L  RH EHI+AYGEGNERRLTG+HETA I+ FSWGVANRG SIRVGRDTE +GKGY EDRRPASNMDPY+VTS++AETT+LW+P
Sbjct:  322 EVIKKAILNLSLRHKEHISAYGEGNERRLTGKHETASIDQFSWGVANRGCSIRVGRDTEAKGKGYLEDRRPASNMDPYIVTSLLAETTLLWEP 414          
BLAST of CX298457 vs. ExPASy Swiss-Prot
Match: GLNA2_PEA (Glutamine synthetase leaf isozyme, chloroplastic OS=Pisum sativum GN=GS2 PE=2 SV=2)

HSP 1 Score: 155.992 bits (393), Expect = 9.639e-38
Identity = 73/93 (78.49%), Postives = 81/93 (87.10%), Query Frame = 3
Query:    3 DVIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 281
            +VIKKAI  L  RH  HI AYGEGNERRLTG+HETA IN FSWGVANRG SIRVGRDTEK GKGY EDRRPASNMDPYVVT+++AE+T+LW+P
Sbjct:  322 EVIKKAILNLSLRHKIHIEAYGEGNERRLTGKHETASINDFSWGVANRGCSIRVGRDTEKNGKGYLEDRRPASNMDPYVVTALLAESTLLWEP 414          
The following BLAST results are available for this feature:
BLAST of CX298457 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 87
Match NameE-valueIdentityDescription
GLNA3_HORVU1.216e-4084.78Glutamine synthetase OS=Hordeum vulgare PE=2 SV=1[more]
GLN15_ARATH3.539e-4085.56Glutamine synthetase cytosolic isozyme 1-5 OS=Arab... [more]
GLNA4_PHAVU6.037e-4081.72Glutamine synthetase leaf isozyme, chloroplastic O... [more]
GLNA_NICPL7.885e-4083.70Glutamine synthetase OS=Nicotiana plumbaginifolia ... [more]
GLNA1_DAUCA2.294e-3984.44Glutamine synthetase cytosolic isozyme OS=Daucus c... [more]
GLNAC_BRANA5.111e-3979.57Glutamine synthetase, chloroplastic OS=Brassica na... [more]
GLNA2_DAUCA6.675e-3979.57Glutamine synthetase, chloroplastic OS=Daucus caro... [more]
GLNA2_MEDSA1.487e-3879.57Glutamine synthetase leaf isozyme, chloroplastic O... [more]
GLNA2_ARATH1.942e-3878.49Glutamine synthetase, chloroplastic/mitochondrial ... [more]
GLNA2_PEA9.639e-3878.49Glutamine synthetase leaf isozyme, chloroplastic O... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC06012D07SK RindPdig24 Citrus clementina cDNA clone C06012D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298457 ID=CX298457; Name=CX298457; organism=Citrus clementina; type=EST; length=518bp
TTGATGTGATCAAGAAGGCAATTGAAAAGTTGGGGAAACGCCACGGGGAA
CACATTGCTGCTTATGGAGAGGGCAACGAAAGAAGACTGACAGGTCGACA
TGAAACTGCAGATATCAACACTTTCTCTTGGGGTGTCGCTAACAGAGGTG
CCTCCATTCGCGTTGGTCGTGACACTGAGAAAGAAGGAAAGGGATACTTT
GAAGACAGAAGGCCAGCTTCAAACATGGACCCATATGTTGTGACTTCAAT
GATCGCTGAAACCACCATTCTCTGGAAGCCTTAGAAAACAAACTTGAGCA
TCGATGACGAAGAAGAAATCGAGGGAAAATGAAAGCTTAAATTGAACCCA
CCACAAAAATAATTCTTATGTTTTTATCTTTGTAATGTGTCTATGCATTT
AAGTCTGTTGTTTGAACTTGTTCCTTGCCATTCAAAACTGTACTCCGTTT
CTCTTGTTCTTCATTCTTTGGGATGCTCGGTTGTGATTACTATATTATAG
TTTAAAACTAAAAAAAAA
back to top