CX298457

Overview
NameCX298457
Unique NameCX298457
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length518
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX298457 vs. ExPASy Swiss-Prot
Match: GLNA_XENLA (Glutamine synthetase OS=Xenopus laevis GN=glul PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 2.462e-25
Identity = 58/92 (63.04%), Postives = 67/92 (72.83%), Query Frame = 3
Query:    9 IKKAIEKLGKRHGEHIAAY----GEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTIL 272
            I+ AIEKLGKRH  HI  Y    G+ N RRLTG+HET+ I+ FS GVANRGASIR+ R   +EG GYFEDRRPA+N DPY VT  +  TTIL
Sbjct:  270 IEDAIEKLGKRHDYHICVYDPRGGKDNSRRLTGQHETSSIHEFSAGVANRGASIRIPRQVGQEGYGYFEDRRPAANCDPYAVTEALVRTTIL 361          
BLAST of CX298457 vs. ExPASy Swiss-Prot
Match: GLNA_GIBFU (Glutamine synthetase OS=Gibberella fujikuroi GN=GLN1 PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 4.200e-25
Identity = 55/85 (64.71%), Postives = 66/85 (77.65%), Query Frame = 3
Query:    6 VIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAE 260
            VI++A++KL   H E IA YGE NE RLTGRHET  I++FSWGVANRG SIRV R+T  +G GYFEDRRPASN DPY VT ++ +
Sbjct:  265 VIEEALKKLEPHHVECIAEYGEDNELRLTGRHETGSIDSFSWGVANRGTSIRVPRETAAKGYGYFEDRRPASNADPYRVTKVLLQ 349          
BLAST of CX298457 vs. ExPASy Swiss-Prot
Match: GLNA_FUSSH (Glutamine synthetase OS=Fusarium solani subsp. phaseoli GN=GLN1 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 7.165e-25
Identity = 54/88 (61.36%), Postives = 66/88 (75.00%), Query Frame = 3
Query:    6 VIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTI 269
            VI++A++KL   H E IA YGE NE RLTGRHET  I++FSWGVANRG SIR  R+T  +G GYFEDRRPASN DPY VT  + + ++
Sbjct:  268 VIEEALKKLEPHHAECIAEYGEDNELRLTGRHETGSIDSFSWGVANRGTSIRAPRETAAKGYGYFEDRRPASNADPYRVTKALLQFSL 355          
BLAST of CX298457 vs. ExPASy Swiss-Prot
Match: GLNA_SCHPO (Glutamine synthetase OS=Schizosaccharomyces pombe GN=gln1 PE=1 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 1.596e-24
Identity = 51/85 (60.00%), Postives = 65/85 (76.47%), Query Frame = 3
Query:    9 IKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAET 263
            I+  +EK  KRH EHIA YG+ N+ RLTGRHET  I+ F++GVA+RGAS+R+ R     G GYFEDRRPAS++DPY+VT +I ET
Sbjct:  271 IESYLEKFAKRHKEHIAVYGDDNDLRLTGRHETGSIDKFTYGVADRGASVRIPRSVAMNGCGYFEDRRPASSIDPYLVTGIITET 355          
BLAST of CX298457 vs. ExPASy Swiss-Prot
Match: GLNA2_CHLRE (Glutamine synthetase, chloroplastic OS=Chlamydomonas reinhardtii GN=GLN2 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.035e-23
Identity = 51/88 (57.95%), Postives = 65/88 (73.86%), Query Frame = 3
Query:    6 VIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTI 269
            VI++A+EKL K H EHI  YG GNE RLTG+HET DINTF  GVA+RG+SIR+      +G GY EDRRPA+N+DPY V  ++ +T +
Sbjct:  291 VIEEAVEKLSKTHIEHITQYGIGNEARLTGKHETCDINTFKHGVADRGSSIRIPLPVMLKGYGYLEDRRPAANVDPYTVARLLIKTVL 378          
BLAST of CX298457 vs. ExPASy Swiss-Prot
Match: GLNA_MOUSE (Glutamine synthetase OS=Mus musculus GN=Glul PE=1 SV=6)

HSP 1 Score: 107.457 bits (267), Expect = 3.931e-23
Identity = 56/92 (60.87%), Postives = 66/92 (71.74%), Query Frame = 3
Query:    9 IKKAIEKLGKRHGEHIAAY----GEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTIL 272
            I++AI+KL KRH  HI AY    G  N RRLTG HET++IN FS GVANRGASIR+ R   +E KGYFEDRRP++N DPY VT  I  T +L
Sbjct:  270 IEEAIDKLSKRHQYHIRAYDPKGGLDNARRLTGFHETSNINDFSAGVANRGASIRIPRTVGQEKKGYFEDRRPSANCDPYAVTEAIVRTCLL 361          
BLAST of CX298457 vs. ExPASy Swiss-Prot
Match: GLNA1_DROME (Glutamine synthetase 1, mitochondrial OS=Drosophila melanogaster GN=Gs1 PE=2 SV=3)

HSP 1 Score: 106.686 bits (265), Expect = 6.706e-23
Identity = 54/92 (58.70%), Postives = 63/92 (68.48%), Query Frame = 3
Query:    9 IKKAIEKLGKRHGEHIAAY----GEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTIL 272
            I++AIEKL KRH  HI AY    G+ NERRL GR ET+ I+ FSWGVANR  S+RV R     GKGY EDRRP+SN DPY V + I  T +L
Sbjct:  306 IEEAIEKLSKRHERHIKAYDPKEGKDNERRLVGRLETSSIDKFSWGVANRAVSVRVPRGVATAGKGYLEDRRPSSNCDPYAVCNAIVRTCLL 397          
BLAST of CX298457 vs. ExPASy Swiss-Prot
Match: GLNA_SQUAC (Glutamine synthetase, mitochondrial OS=Squalus acanthias PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 8.758e-23
Identity = 54/92 (58.70%), Postives = 65/92 (70.65%), Query Frame = 3
Query:    9 IKKAIEKLGKRHGEHIAAY----GEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTIL 272
            I+ +IEKLGKRH  HI AY    G  N R LTG HET++IN FS GVANRGASIR+ R   ++ KGYFEDRRP++N DPY VT  +  T +L
Sbjct:  299 IEDSIEKLGKRHQYHIRAYDPKGGLDNARALTGHHETSNINEFSAGVANRGASIRIPRSVGQDKKGYFEDRRPSANCDPYAVTEALVRTCLL 390          
BLAST of CX298457 vs. ExPASy Swiss-Prot
Match: GLNA_ACOCA (Glutamine synthetase OS=Acomys cahirinus GN=GLUL PE=2 SV=3)

HSP 1 Score: 106.301 bits (264), Expect = 8.758e-23
Identity = 55/92 (59.78%), Postives = 66/92 (71.74%), Query Frame = 3
Query:    9 IKKAIEKLGKRHGEHIAAY----GEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTIL 272
            I++AI+KL KRH  HI AY    G  N RRLTG HET++IN FS GVANRGASIR+ R   +E +GYFEDRRP++N DPY VT  I  T +L
Sbjct:  270 IEEAIDKLSKRHQYHIRAYDPKGGLDNARRLTGFHETSNINDFSAGVANRGASIRIPRTVGQEKRGYFEDRRPSANCDPYAVTEAIVRTCLL 361          
BLAST of CX298457 vs. ExPASy Swiss-Prot
Match: GLNA_BOVIN (Glutamine synthetase OS=Bos taurus GN=GLUL PE=2 SV=4)

HSP 1 Score: 105.916 bits (263), Expect = 1.144e-22
Identity = 55/92 (59.78%), Postives = 66/92 (71.74%), Query Frame = 3
Query:    9 IKKAIEKLGKRHGEHIAAY----GEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTIL 272
            I++AIEKL KRH  HI AY    G  N RRLTG HET++IN FS GVANRGASIR+ R   +E KGYFEDRRP++N DP+ VT  +  T +L
Sbjct:  270 IEEAIEKLSKRHQYHIRAYDPKGGLDNARRLTGFHETSNINDFSAGVANRGASIRIPRTVGQEKKGYFEDRRPSANCDPFAVTEALIRTCLL 361          
The following BLAST results are available for this feature:
BLAST of CX298457 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 87
Match NameE-valueIdentityDescription
GLNA_XENLA2.462e-2563.04Glutamine synthetase OS=Xenopus laevis GN=glul PE=... [more]
GLNA_GIBFU4.200e-2564.71Glutamine synthetase OS=Gibberella fujikuroi GN=GL... [more]
GLNA_FUSSH7.165e-2561.36Glutamine synthetase OS=Fusarium solani subsp. pha... [more]
GLNA_SCHPO1.596e-2460.00Glutamine synthetase OS=Schizosaccharomyces pombe ... [more]
GLNA2_CHLRE1.035e-2357.95Glutamine synthetase, chloroplastic OS=Chlamydomon... [more]
GLNA_MOUSE3.931e-2360.87Glutamine synthetase OS=Mus musculus GN=Glul PE=1 ... [more]
GLNA1_DROME6.706e-2358.70Glutamine synthetase 1, mitochondrial OS=Drosophil... [more]
GLNA_SQUAC8.758e-2358.70Glutamine synthetase, mitochondrial OS=Squalus aca... [more]
GLNA_ACOCA8.758e-2359.78Glutamine synthetase OS=Acomys cahirinus GN=GLUL P... [more]
GLNA_BOVIN1.144e-2259.78Glutamine synthetase OS=Bos taurus GN=GLUL PE=2 SV... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC06012D07SK RindPdig24 Citrus clementina cDNA clone C06012D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298457 ID=CX298457; Name=CX298457; organism=Citrus clementina; type=EST; length=518bp
TTGATGTGATCAAGAAGGCAATTGAAAAGTTGGGGAAACGCCACGGGGAA
CACATTGCTGCTTATGGAGAGGGCAACGAAAGAAGACTGACAGGTCGACA
TGAAACTGCAGATATCAACACTTTCTCTTGGGGTGTCGCTAACAGAGGTG
CCTCCATTCGCGTTGGTCGTGACACTGAGAAAGAAGGAAAGGGATACTTT
GAAGACAGAAGGCCAGCTTCAAACATGGACCCATATGTTGTGACTTCAAT
GATCGCTGAAACCACCATTCTCTGGAAGCCTTAGAAAACAAACTTGAGCA
TCGATGACGAAGAAGAAATCGAGGGAAAATGAAAGCTTAAATTGAACCCA
CCACAAAAATAATTCTTATGTTTTTATCTTTGTAATGTGTCTATGCATTT
AAGTCTGTTGTTTGAACTTGTTCCTTGCCATTCAAAACTGTACTCCGTTT
CTCTTGTTCTTCATTCTTTGGGATGCTCGGTTGTGATTACTATATTATAG
TTTAAAACTAAAAAAAAA
back to top