CX298464

Overview
NameCX298464
Unique NameCX298464
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length511
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX298464 vs. ExPASy Swiss-Prot
Match: CYC_PICPA (Cytochrome c OS=Pichia pastoris GN=CYC1 PE=3 SV=3)

HSP 1 Score: 121.709 bits (304), Expect = 1.951e-27
Identity = 56/86 (65.12%), Postives = 64/86 (74.42%), Query Frame = 2
Query:   11 CHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQST 268
            CHTVE G  HK GPNL+G+FGR+SG   GYSY+ ANK   V W E+T+ DYL NPKKYIPGTKM F GLKK +DR DLI YL  +T
Sbjct:   24 CHTVEAGGPHKVGPNLHGVFGRKSGLAEGYSYTDANKRKGVEWSEQTMSDYLENPKKYIPGTKMAFGGLKKAKDRNDLITYLASAT 109          
BLAST of CX298464 vs. ExPASy Swiss-Prot
Match: CYC_DANRE (Cytochrome c OS=Danio rerio GN=cyc PE=2 SV=3)

HSP 1 Score: 121.709 bits (304), Expect = 1.951e-27
Identity = 56/89 (62.92%), Postives = 68/89 (76.40%), Query Frame = 2
Query:    5 AHCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 271
            A CHTVE G  HK GPNL GLFGR++G   G+SY+ ANK+  + W E TL +YL NPKKYIPGTKM+F G+KK  +RADLIAYLK +T+
Sbjct:   16 AQCHTVENGGKHKVGPNLWGLFGRKTGQAEGFSYTDANKSKGIVWGEDTLMEYLENPKKYIPGTKMIFAGIKKKGERADLIAYLKSATS 104          
BLAST of CX298464 vs. ExPASy Swiss-Prot
Match: CYC_CANGA (Cytochrome c OS=Candida glabrata GN=CYC1 PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.951e-27
Identity = 56/87 (64.37%), Postives = 67/87 (77.01%), Query Frame = 2
Query:   11 CHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 271
            CHTVEKG  +K GPNL+G+FGR+SG   GYSY+ AN    V W+E  + DYL NPKKYIPGTKM F GLKK +DR DLIAYLK++T+
Sbjct:   17 CHTVEKGGPNKVGPNLHGIFGRKSGQAAGYSYTDANIKKNVTWDEDNMSDYLTNPKKYIPGTKMAFGGLKKEKDRKDLIAYLKKATS 103          
BLAST of CX298464 vs. ExPASy Swiss-Prot
Match: CYC_HELAS (Cytochrome c OS=Helix aspersa PE=1 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 3.327e-27
Identity = 52/86 (60.47%), Postives = 66/86 (76.74%), Query Frame = 2
Query:   11 CHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQST 268
            CHTVE G  HK GPNL+GLFGR+ G  PG++Y+ ANK   + W+ +TL++YL NPKKYIPGTKMVF GLK   +R  LIAYL+++T
Sbjct:   17 CHTVEAGGKHKTGPNLSGLFGRKQGQAPGFAYTDANKGKGITWKNQTLFEYLENPKKYIPGTKMVFAGLKBZTERVHLIAYLZZAT 102          
BLAST of CX298464 vs. ExPASy Swiss-Prot
Match: CYC_THEPA (Cytochrome c OS=Theileria parva GN=TP02_0396 PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 4.345e-27
Identity = 56/89 (62.92%), Postives = 70/89 (78.65%), Query Frame = 2
Query:    5 AHCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 271
            A CHT+ KG   KQGPNL G +GR+SG +  Y+YS ANKN  + W +K L+ YL+NPK+YIPGTKMVF GLKK QDRADLIAYLK++++
Sbjct:   27 AQCHTINKGGSVKQGPNLYGFYGRKSGASD-YAYSDANKNSGIVWSDKHLFVYLVNPKQYIPGTKMVFAGLKKEQDRADLIAYLKEASS 114          
BLAST of CX298464 vs. ExPASy Swiss-Prot
Match: CYC_ROSNE (Cytochrome c OS=Rosellinia necatrix GN=CYTC PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 4.345e-27
Identity = 54/89 (60.67%), Postives = 69/89 (77.53%), Query Frame = 2
Query:    5 AHCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 271
            A CHT+++G G+K GP L+GLFGR++G+  GY+Y+ ANK   + W E TL+ YL NPKKYIPGTKM F GLKK +DR DLI+YLK+ TA
Sbjct:   20 AQCHTLKEGEGNKVGPALHGLFGRKTGSVEGYAYTDANKQKGIEWTEDTLFTYLENPKKYIPGTKMAFGGLKKDKDRNDLISYLKKETA 108          
BLAST of CX298464 vs. ExPASy Swiss-Prot
Match: CYC_CURLU (Cytochrome c OS=Curvularia lunata PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 4.345e-27
Identity = 53/88 (60.23%), Postives = 67/88 (76.14%), Query Frame = 2
Query:    5 AHCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQST 268
            A CHT++ G G+K GP L+GLFGR++G+  GYSY+ ANK   + W   TL++YL NPKKYIPGTKM F GLKKP+DR DLI +L+Q T
Sbjct:   20 AQCHTLKAGEGNKIGPELHGLFGRKTGSVAGYSYTDANKQKGIEWNHDTLFEYLENPKKYIPGTKMAFGGLKKPKDRNDLITFLEQET 107          
BLAST of CX298464 vs. ExPASy Swiss-Prot
Match: CYC1_ARATH (Cytochrome c OS=Arabidopsis thaliana GN=CC-1 PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 4.345e-27
Identity = 52/88 (59.09%), Postives = 69/88 (78.41%), Query Frame = 2
Query:    5 AHCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQST 268
            A CHT++ G G+K GP L+GLFGR++G+  GYSY+ ANK   + W++ TL++YL NPKKYIPGTKM F GLKKP+DR DLI +L++ T
Sbjct:   24 AQCHTLKAGEGNKIGPELHGLFGRKTGSVAGYSYTDANKQKGIEWKDDTLFEYLENPKKYIPGTKMAFGGLKKPKDRNDLITFLEEET 111          
BLAST of CX298464 vs. ExPASy Swiss-Prot
Match: CYC_THUAA (Cytochrome c OS=Thunnus alalunga GN=cyc PE=1 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 7.412e-27
Identity = 54/89 (60.67%), Postives = 66/89 (74.16%), Query Frame = 2
Query:    5 AHCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 271
            A CHTVE G  HK GPNL GLFGR++G   GYSY+ ANK+  + W   TL +YL NPKKYIPGTKM+F G+KK  +R DL+AYLK +T+
Sbjct:   15 AQCHTVENGGKHKVGPNLWGLFGRKTGQAEGYSYTDANKSKGIVWNNDTLMEYLENPKKYIPGTKMIFAGIKKKGERQDLVAYLKSATS 103          
BLAST of CX298464 vs. ExPASy Swiss-Prot
Match: CYC_MACMA (Cytochrome c OS=Macrobrachium malcolmsonii PE=1 SV=2)

HSP 1 Score: 119.398 bits (298), Expect = 9.680e-27
Identity = 56/88 (63.64%), Postives = 64/88 (72.73%), Query Frame = 2
Query:    5 AHCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQST 268
            A CH+ +    HK GPNLNGLFGRQ+G   GY Y+ ANK   + W+  TL  YL NPKKYIPGTKMVF GLKK  +RADLIAYLKQ+T
Sbjct:   16 AQCHSAQANLKHKTGPNLNGLFGRQTGQASGYVYTDANKAKGITWQADTLDVYLENPKKYIPGTKMVFAGLKKANERADLIAYLKQAT 103          
The following BLAST results are available for this feature:
BLAST of CX298464 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 170
Match NameE-valueIdentityDescription
CYC_PICPA1.951e-2765.12Cytochrome c OS=Pichia pastoris GN=CYC1 PE=3 SV=3[more]
CYC_DANRE1.951e-2762.92Cytochrome c OS=Danio rerio GN=cyc PE=2 SV=3[more]
CYC_CANGA1.951e-2764.37Cytochrome c OS=Candida glabrata GN=CYC1 PE=3 SV=1[more]
CYC_HELAS3.327e-2760.47Cytochrome c OS=Helix aspersa PE=1 SV=1[more]
CYC_THEPA4.345e-2762.92Cytochrome c OS=Theileria parva GN=TP02_0396 PE=3 ... [more]
CYC_ROSNE4.345e-2760.67Cytochrome c OS=Rosellinia necatrix GN=CYTC PE=3 S... [more]
CYC_CURLU4.345e-2760.23Cytochrome c OS=Curvularia lunata PE=3 SV=1[more]
CYC1_ARATH4.345e-2759.09Cytochrome c OS=Arabidopsis thaliana GN=CC-1 PE=2 ... [more]
CYC_THUAA7.412e-2760.67Cytochrome c OS=Thunnus alalunga GN=cyc PE=1 SV=1[more]
CYC_MACMA9.680e-2763.64Cytochrome c OS=Macrobrachium malcolmsonii PE=1 SV... [more]

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Properties
Property NameValue
Genbank descriptionC06012E02SK RindPdig24 Citrus clementina cDNA clone C06012E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298464 ID=CX298464; Name=CX298464; organism=Citrus clementina; type=EST; length=511bp
GAGGGCTCACTGCCACACCGTCGAGAAAGGCGCCGGTCACAAACAAGGTC
CTAATTTGAACGGATTGTTTGGAAGGCAATCGGGGACTACACCTGGGTAC
TCATACTCTGCGGCTAACAAGAACATGGCTGTGAATTGGGAGGAAAAGAC
TTTGTATGATTACTTGCTCAACCCTAAGAAGTACATTCCTGGAACAAAGA
TGGTATTCCCTGGATTGAAGAAGCCTCAGGATCGTGCTGACCTTATTGCA
TATTTGAAACAATCTACTGCATAAGAACTTGCCGATAGTCAGTTTACCTA
TTCCATTTTGCAGTTGTTGAAGATTGTTTTGCGGTGCGGATATAGTACTG
TTTTTTACCAATAAATTTTAAACATTTAAGGTTCAGCAATGTTCTTTGTA
ACTTGAGCATTGCTAATTTGAGAAAAGGTTGCTGTCATTGGCAAACATGA
TATTCAATTGAATTTCCTGGTTATAATCATATTTCATGAAAAAAAAAAAA
AAAAAAAAAAA
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