CX298464

Overview
NameCX298464
Unique NameCX298464
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length511
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX298464 vs. ExPASy Swiss-Prot
Match: CYC_RANCA (Cytochrome c OS=Rana catesbeiana PE=1 SV=2)

HSP 1 Score: 119.013 bits (297), Expect = 1.264e-26
Identity = 54/87 (62.07%), Postives = 64/87 (73.56%), Query Frame = 2
Query:    5 AHCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQS 265
            A CHT EKG  HK GPNL GL GR++G   G+SY+ ANKN  + W E TL +YL NPKKYIPGTKM+F G+KK  +R DLIAYLK +
Sbjct:   16 AQCHTCEKGGKHKVGPNLYGLIGRKTGQAAGFSYTDANKNKGITWGEDTLMEYLENPKKYIPGTKMIFAGIKKKGERQDLIAYLKSA 102          
BLAST of CX298464 vs. ExPASy Swiss-Prot
Match: CYC_PACTA (Cytochrome c OS=Pachysolen tannophilus GN=CYC1 PE=3 SV=3)

HSP 1 Score: 118.627 bits (296), Expect = 1.651e-26
Identity = 54/86 (62.79%), Postives = 61/86 (70.93%), Query Frame = 2
Query:   11 CHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQST 268
            CHT E G  HK GPNLNG+FGR SG   GYSY+ ANK     WE +T+ DYL NPKKYIPGTKM F GLKK +DR DL+ YL  +T
Sbjct:   24 CHTTEAGGAHKVGPNLNGVFGRHSGQAEGYSYTDANKQKGALWEAQTMSDYLENPKKYIPGTKMAFGGLKKAKDRNDLVTYLLSAT 109          
BLAST of CX298464 vs. ExPASy Swiss-Prot
Match: CYC1_YEAST (Cytochrome c iso-1 OS=Saccharomyces cerevisiae GN=CYC1 PE=1 SV=2)

HSP 1 Score: 117.472 bits (293), Expect = 3.678e-26
Identity = 54/85 (63.53%), Postives = 63/85 (74.12%), Query Frame = 2
Query:   11 CHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQS 265
            CHTVEKG  HK GPNL+G+FGR SG   GYSY+ AN    V W+E  + +YL NPKKYIPGTKM F GLKK +DR DLI YLK++
Sbjct:   23 CHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKNVLWDENNMSEYLTNPKKYIPGTKMAFGGLKKEKDRNDLITYLKKA 107          
BLAST of CX298464 vs. ExPASy Swiss-Prot
Match: CYC_ISSOR (Cytochrome c OS=Issatchenkia orientalis GN=CYC1 PE=1 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 4.804e-26
Identity = 52/88 (59.09%), Postives = 63/88 (71.59%), Query Frame = 2
Query:    5 AHCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQST 268
            A CHT+E G  HK GPNL+G+F R SG   GYSY+ ANK   V W E T+ DYL NPKKYIPGTKM F GLKK +DR DL+ Y+ +++
Sbjct:   21 AQCHTIEAGGPHKVGPNLHGIFSRHSGQAEGYSYTDANKRAGVEWAEPTMSDYLENPKKYIPGTKMAFGGLKKAKDRNDLVTYMLEAS 108          
BLAST of CX298464 vs. ExPASy Swiss-Prot
Match: CYC_STELP (Cytochrome c OS=Stellaria longipes PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 6.275e-26
Identity = 52/88 (59.09%), Postives = 67/88 (76.14%), Query Frame = 2
Query:    5 AHCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQST 268
            A CHT+ +G G+K GPNL+GLFGR +G+  G+SY+ ANK   + W + TL++YL NPKKYIPGTKM F GLKK +DR DLI +L+ ST
Sbjct:   20 AQCHTLGEGEGNKIGPNLHGLFGRHTGSVEGFSYTDANKAKGIEWNKDTLFEYLENPKKYIPGTKMAFGGLKKDKDRNDLITFLQDST 107          
BLAST of CX298464 vs. ExPASy Swiss-Prot
Match: CYC_DEBHA (Cytochrome c OS=Debaryomyces hansenii GN=CYC1 PE=1 SV=3)

HSP 1 Score: 116.701 bits (291), Expect = 6.275e-26
Identity = 54/86 (62.79%), Postives = 64/86 (74.42%), Query Frame = 2
Query:   11 CHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQST 268
            CHTVE+G  HK GPNL+G+ GR SG   G+SY+ ANK   V W E+ L DYL NPKKYIPGTKM F GLKK +DR DLI+YL ++T
Sbjct:   24 CHTVEEGGPHKVGPNLHGVVGRTSGQAQGFSYTDANKKKGVEWSEQNLSDYLENPKKYIPGTKMAFGGLKKAKDRNDLISYLVKAT 109          
BLAST of CX298464 vs. ExPASy Swiss-Prot
Match: CYC_USTSP (Cytochrome c OS=Ustilago sphaerogena PE=1 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.070e-25
Identity = 53/88 (60.23%), Postives = 65/88 (73.86%), Query Frame = 2
Query:    5 AHCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQST 268
            A CHT+  G  +K GPNL+GLFGR+SGT  G+SY+ ANK     WEE+T  +YL NPKKYIPGTKM F GLKK +DR DL+ YL++ T
Sbjct:   19 AQCHTLGAGEPNKVGPNLHGLFGRKSGTVEGFSYTDANKKAGQVWEEETFLEYLENPKKYIPGTKMAFGGLKKEKDRNDLVTYLREET 106          
BLAST of CX298464 vs. ExPASy Swiss-Prot
Match: CYC7_YEAST (Cytochrome c iso-2 OS=Saccharomyces cerevisiae GN=CYC7 PE=1 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 5.312e-25
Identity = 50/85 (58.82%), Postives = 64/85 (75.29%), Query Frame = 2
Query:   11 CHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQS 265
            CHT+E+G  +K GPNL+G+FGR SG   GYSY+ AN N  V W+E ++ +YL NPKKYIPGTKM F GLKK +DR DLI Y+ ++
Sbjct:   27 CHTIEEGGPNKVGPNLHGIFGRHSGQVKGYSYTDANINKNVKWDEDSMSEYLTNPKKYIPGTKMAFAGLKKEKDRNDLITYMTKA 111          
BLAST of CX298464 vs. ExPASy Swiss-Prot
Match: CYC_KLULA (Cytochrome c OS=Kluyveromyces lactis GN=CYCK PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 6.937e-25
Identity = 51/82 (62.20%), Postives = 61/82 (74.39%), Query Frame = 2
Query:   11 CHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYL 256
            CHTVE G  HK GPNL+G+FGR SG   GYSY+ AN    V W+E+T+ DYL NPKKYIPGTKM F GLKK +DR D++ Y+
Sbjct:   24 CHTVEAGGPHKVGPNLHGVFGRHSGKASGYSYTDANIKKNVLWDEQTMSDYLENPKKYIPGTKMAFGGLKKEKDRNDIVTYM 105          
BLAST of CX298464 vs. ExPASy Swiss-Prot
Match: CYC_DICDI (Cytochrome c OS=Dictyostelium discoideum GN=cytC PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 9.060e-25
Identity = 55/91 (60.44%), Postives = 65/91 (71.43%), Query Frame = 2
Query:    5 AHCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKN---MAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQST 268
            A CHT   GA +KQGPNL GLF  +S + PGY+YS  NKN     + W E+TL+DYL NPKKYIP TKM F G K  QDRAD++AYL+QST
Sbjct:   22 AQCHTTANGAPNKQGPNLYGLFFPKSRSFPGYAYSDPNKNTGKFCIMWGEQTLFDYLENPKKYIPKTKMAFAGFKSEQDRADVVAYLEQST 112          
The following BLAST results are available for this feature:
BLAST of CX298464 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 170
Match NameE-valueIdentityDescription
CYC_RANCA1.264e-2662.07Cytochrome c OS=Rana catesbeiana PE=1 SV=2[more]
CYC_PACTA1.651e-2662.79Cytochrome c OS=Pachysolen tannophilus GN=CYC1 PE=... [more]
CYC1_YEAST3.678e-2663.53Cytochrome c iso-1 OS=Saccharomyces cerevisiae GN=... [more]
CYC_ISSOR4.804e-2659.09Cytochrome c OS=Issatchenkia orientalis GN=CYC1 PE... [more]
CYC_STELP6.275e-2659.09Cytochrome c OS=Stellaria longipes PE=3 SV=1[more]
CYC_DEBHA6.275e-2662.79Cytochrome c OS=Debaryomyces hansenii GN=CYC1 PE=1... [more]
CYC_USTSP1.070e-2560.23Cytochrome c OS=Ustilago sphaerogena PE=1 SV=1[more]
CYC7_YEAST5.312e-2558.82Cytochrome c iso-2 OS=Saccharomyces cerevisiae GN=... [more]
CYC_KLULA6.937e-2562.20Cytochrome c OS=Kluyveromyces lactis GN=CYCK PE=3 ... [more]
CYC_DICDI9.060e-2560.44Cytochrome c OS=Dictyostelium discoideum GN=cytC P... [more]

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Properties
Property NameValue
Genbank descriptionC06012E02SK RindPdig24 Citrus clementina cDNA clone C06012E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298464 ID=CX298464; Name=CX298464; organism=Citrus clementina; type=EST; length=511bp
GAGGGCTCACTGCCACACCGTCGAGAAAGGCGCCGGTCACAAACAAGGTC
CTAATTTGAACGGATTGTTTGGAAGGCAATCGGGGACTACACCTGGGTAC
TCATACTCTGCGGCTAACAAGAACATGGCTGTGAATTGGGAGGAAAAGAC
TTTGTATGATTACTTGCTCAACCCTAAGAAGTACATTCCTGGAACAAAGA
TGGTATTCCCTGGATTGAAGAAGCCTCAGGATCGTGCTGACCTTATTGCA
TATTTGAAACAATCTACTGCATAAGAACTTGCCGATAGTCAGTTTACCTA
TTCCATTTTGCAGTTGTTGAAGATTGTTTTGCGGTGCGGATATAGTACTG
TTTTTTACCAATAAATTTTAAACATTTAAGGTTCAGCAATGTTCTTTGTA
ACTTGAGCATTGCTAATTTGAGAAAAGGTTGCTGTCATTGGCAAACATGA
TATTCAATTGAATTTCCTGGTTATAATCATATTTCATGAAAAAAAAAAAA
AAAAAAAAAAA
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