CX298464

Overview
NameCX298464
Unique NameCX298464
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length511
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX298464 vs. ExPASy Swiss-Prot
Match: CYC_APIME (Cytochrome c OS=Apis mellifera GN=cytC PE=1 SV=2)

HSP 1 Score: 131.339 bits (329), Expect = 2.462e-30
Identity = 56/88 (63.64%), Postives = 72/88 (81.82%), Query Frame = 2
Query:    5 AHCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQST 268
            A CHT+E G  HK GPNL G++GR++G  PGYSY+ ANK   + W ++TL++YL NPKKYIPGTKMVF GLKKPQ+RADLIAY++Q++
Sbjct:   20 AQCHTIESGGKHKVGPNLYGVYGRKTGQAPGYSYTDANKGKGITWNKETLFEYLENPKKYIPGTKMVFAGLKKPQERADLIAYIEQAS 107          
BLAST of CX298464 vs. ExPASy Swiss-Prot
Match: CYC_SHEEP (Cytochrome c OS=Ovis aries GN=CYCS PE=1 SV=2)

HSP 1 Score: 130.954 bits (328), Expect = 3.215e-30
Identity = 58/88 (65.91%), Postives = 71/88 (80.68%), Query Frame = 2
Query:    5 AHCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQST 268
            A CHTVEKG  HK GPNL+GLFGR++G  PG+SY+ ANKN  + W E+TL +YL NPKKYIPGTKM+F G+KK  +R DLIAYLK++T
Sbjct:   16 AQCHTVEKGGKHKTGPNLHGLFGRKTGQAPGFSYTDANKNKGITWGEETLMEYLENPKKYIPGTKMIFAGIKKKGEREDLIAYLKKAT 103          
BLAST of CX298464 vs. ExPASy Swiss-Prot
Match: CYC_PIG (Cytochrome c OS=Sus scrofa GN=CYCS PE=1 SV=2)

HSP 1 Score: 130.954 bits (328), Expect = 3.215e-30
Identity = 58/88 (65.91%), Postives = 71/88 (80.68%), Query Frame = 2
Query:    5 AHCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQST 268
            A CHTVEKG  HK GPNL+GLFGR++G  PG+SY+ ANKN  + W E+TL +YL NPKKYIPGTKM+F G+KK  +R DLIAYLK++T
Sbjct:   16 AQCHTVEKGGKHKTGPNLHGLFGRKTGQAPGFSYTDANKNKGITWGEETLMEYLENPKKYIPGTKMIFAGIKKKGEREDLIAYLKKAT 103          
BLAST of CX298464 vs. ExPASy Swiss-Prot
Match: CYC_MACGI (Cytochrome c OS=Macropus giganteus GN=CYCS PE=1 SV=2)

HSP 1 Score: 130.954 bits (328), Expect = 3.215e-30
Identity = 58/88 (65.91%), Postives = 71/88 (80.68%), Query Frame = 2
Query:    5 AHCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQST 268
            A CHTVEKG  HK GPNLNG+FGR++G  PG++Y+ ANKN  + W E TL +YL NPKKYIPGTKM+F G+KK  +RADLIAYLK++T
Sbjct:   16 AQCHTVEKGGKHKTGPNLNGIFGRKTGQAPGFTYTDANKNKGIIWGEDTLMEYLENPKKYIPGTKMIFAGIKKKGERADLIAYLKKAT 103          
BLAST of CX298464 vs. ExPASy Swiss-Prot
Match: CYC_BOVIN (Cytochrome c OS=Bos taurus GN=CYCS PE=1 SV=2)

HSP 1 Score: 130.954 bits (328), Expect = 3.215e-30
Identity = 58/88 (65.91%), Postives = 71/88 (80.68%), Query Frame = 2
Query:    5 AHCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQST 268
            A CHTVEKG  HK GPNL+GLFGR++G  PG+SY+ ANKN  + W E+TL +YL NPKKYIPGTKM+F G+KK  +R DLIAYLK++T
Sbjct:   16 AQCHTVEKGGKHKTGPNLHGLFGRKTGQAPGFSYTDANKNKGITWGEETLMEYLENPKKYIPGTKMIFAGIKKKGEREDLIAYLKKAT 103          
BLAST of CX298464 vs. ExPASy Swiss-Prot
Match: CYC_DRONO (Cytochrome c OS=Dromaius novae-hollandiae GN=CYC PE=1 SV=2)

HSP 1 Score: 130.568 bits (327), Expect = 4.199e-30
Identity = 58/89 (65.17%), Postives = 70/89 (78.65%), Query Frame = 2
Query:    5 AHCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 271
            + CHTVEKG  HK GPNLNGLFGR++G   G+SY+ ANKN  + W E TL +YL NPKKYIPGTKM+F G+KK  +RADLIAYLK +T+
Sbjct:   16 SQCHTVEKGGKHKTGPNLNGLFGRKTGQAEGFSYTDANKNKGITWGEDTLMEYLENPKKYIPGTKMIFAGIKKKSERADLIAYLKDATS 104          
BLAST of CX298464 vs. ExPASy Swiss-Prot
Match: CYC_SARPE (Cytochrome c OS=Sarcophaga peregrina PE=1 SV=2)

HSP 1 Score: 130.183 bits (326), Expect = 5.484e-30
Identity = 57/88 (64.77%), Postives = 69/88 (78.41%), Query Frame = 2
Query:    5 AHCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQST 268
            A CHTVE G  HK GPNL+GLFGR++G  PG++Y+ ANK   + W E TL++YL NPKKYIPGTKM+F GLKKP +R DLIAYLK +T
Sbjct:   20 AQCHTVEAGGKHKVGPNLHGLFGRKTGQAPGFAYTDANKAKGITWNEDTLFEYLENPKKYIPGTKMIFAGLKKPNERGDLIAYLKSAT 107          
BLAST of CX298464 vs. ExPASy Swiss-Prot
Match: CYC_CHESE (Cytochrome c OS=Chelydra serpentina PE=1 SV=2)

HSP 1 Score: 130.183 bits (326), Expect = 5.484e-30
Identity = 58/89 (65.17%), Postives = 70/89 (78.65%), Query Frame = 2
Query:    5 AHCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 271
            A CHTVEKG  HK GPNLNGL GR++G   G+SY+ ANKN  + W E+TL +YL NPKKYIPGTKM+F G+KK  +RADLIAYLK +T+
Sbjct:   16 AQCHTVEKGGKHKTGPNLNGLIGRKTGQAEGFSYTEANKNKGITWGEETLMEYLENPKKYIPGTKMIFAGIKKKAERADLIAYLKDATS 104          
BLAST of CX298464 vs. ExPASy Swiss-Prot
Match: CYC_LUCCU (Cytochrome c OS=Lucilia cuprina PE=1 SV=2)

HSP 1 Score: 129.798 bits (325), Expect = 7.162e-30
Identity = 56/88 (63.64%), Postives = 70/88 (79.55%), Query Frame = 2
Query:    5 AHCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQST 268
            A CHTVE G  HK GPNL+GLFGR++G  PG++Y+ ANK   + W++ TL++YL NPKKYIPGTKM+F GLKKP +R DLIAYLK +T
Sbjct:   20 AQCHTVEAGGKHKVGPNLHGLFGRKTGQAPGFAYTNANKAKGITWQDDTLFEYLENPKKYIPGTKMIFAGLKKPNERGDLIAYLKSAT 107          
BLAST of CX298464 vs. ExPASy Swiss-Prot
Match: CYC_ANAPL (Cytochrome c OS=Anas platyrhynchos GN=CYC PE=1 SV=2)

HSP 1 Score: 129.798 bits (325), Expect = 7.162e-30
Identity = 58/89 (65.17%), Postives = 70/89 (78.65%), Query Frame = 2
Query:    5 AHCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 271
            + CHTVEKG  HK GPNL+GLFGR++G   G+SY+ ANKN  + W E TL +YL NPKKYIPGTKM+F G+KK  +RADLIAYLK +TA
Sbjct:   16 SQCHTVEKGGKHKTGPNLHGLFGRKTGQAEGFSYTDANKNKGITWGEDTLMEYLENPKKYIPGTKMIFAGIKKKSERADLIAYLKDATA 104          
The following BLAST results are available for this feature:
BLAST of CX298464 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 170
Match NameE-valueIdentityDescription
CYC_APIME2.462e-3063.64Cytochrome c OS=Apis mellifera GN=cytC PE=1 SV=2[more]
CYC_SHEEP3.215e-3065.91Cytochrome c OS=Ovis aries GN=CYCS PE=1 SV=2[more]
CYC_PIG3.215e-3065.91Cytochrome c OS=Sus scrofa GN=CYCS PE=1 SV=2[more]
CYC_MACGI3.215e-3065.91Cytochrome c OS=Macropus giganteus GN=CYCS PE=1 SV... [more]
CYC_BOVIN3.215e-3065.91Cytochrome c OS=Bos taurus GN=CYCS PE=1 SV=2[more]
CYC_DRONO4.199e-3065.17Cytochrome c OS=Dromaius novae-hollandiae GN=CYC P... [more]
CYC_SARPE5.484e-3064.77Cytochrome c OS=Sarcophaga peregrina PE=1 SV=2[more]
CYC_CHESE5.484e-3065.17Cytochrome c OS=Chelydra serpentina PE=1 SV=2[more]
CYC_LUCCU7.162e-3063.64Cytochrome c OS=Lucilia cuprina PE=1 SV=2[more]
CYC_ANAPL7.162e-3065.17Cytochrome c OS=Anas platyrhynchos GN=CYC PE=1 SV=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC06012E02SK RindPdig24 Citrus clementina cDNA clone C06012E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298464 ID=CX298464; Name=CX298464; organism=Citrus clementina; type=EST; length=511bp
GAGGGCTCACTGCCACACCGTCGAGAAAGGCGCCGGTCACAAACAAGGTC
CTAATTTGAACGGATTGTTTGGAAGGCAATCGGGGACTACACCTGGGTAC
TCATACTCTGCGGCTAACAAGAACATGGCTGTGAATTGGGAGGAAAAGAC
TTTGTATGATTACTTGCTCAACCCTAAGAAGTACATTCCTGGAACAAAGA
TGGTATTCCCTGGATTGAAGAAGCCTCAGGATCGTGCTGACCTTATTGCA
TATTTGAAACAATCTACTGCATAAGAACTTGCCGATAGTCAGTTTACCTA
TTCCATTTTGCAGTTGTTGAAGATTGTTTTGCGGTGCGGATATAGTACTG
TTTTTTACCAATAAATTTTAAACATTTAAGGTTCAGCAATGTTCTTTGTA
ACTTGAGCATTGCTAATTTGAGAAAAGGTTGCTGTCATTGGCAAACATGA
TATTCAATTGAATTTCCTGGTTATAATCATATTTCATGAAAAAAAAAAAA
AAAAAAAAAAA
back to top