CX298467

Overview
NameCX298467
Unique NameCX298467
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length674
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX298467 vs. ExPASy Swiss-Prot
Match: CESA6_ORYSJ (Probable cellulose synthase A catalytic subunit 6 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA6 PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.851e-28
Identity = 60/80 (75.00%), Postives = 67/80 (83.75%), Query Frame = 3
Query:   12 QSWGPLFGKLFFAIWVIAHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRVDPFTSDDTKANSNG----QCGINC 239
            +SWGPLFGKLFFA WVI HLYPFLKGL+GRQNRTPTIVIVWSILLASIFSLLWVR+DPF      A +NG    +CG++C
Sbjct: 1017 ESWGPLFGKLFFAFWVIVHLYPFLKGLVGRQNRTPTIVIVWSILLASIFSLLWVRIDPFL-----AKNNGPLLEECGLDC 1091          
BLAST of CX298467 vs. ExPASy Swiss-Prot
Match: CESA5_ORYSJ (Probable cellulose synthase A catalytic subunit 5 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA5 PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 7.034e-28
Identity = 59/80 (73.75%), Postives = 67/80 (83.75%), Query Frame = 3
Query:   12 QSWGPLFGKLFFAIWVIAHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRVDPFTSDDTKANSNG----QCGINC 239
            +SWGPLFGKLFFA WVI HLYPFLKGL+GRQNRTPTIVIVWSILLASIFSLLWVR+DPF      A ++G    +CG++C
Sbjct: 1017 ESWGPLFGKLFFAFWVIVHLYPFLKGLVGRQNRTPTIVIVWSILLASIFSLLWVRIDPFL-----AKNDGPLLEECGLDC 1091          
BLAST of CX298467 vs. ExPASy Swiss-Prot
Match: CESA5_ORYSI (Probable cellulose synthase A catalytic subunit 5 [UDP-forming] OS=Oryza sativa subsp. indica GN=CESA5 PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 7.034e-28
Identity = 59/80 (73.75%), Postives = 67/80 (83.75%), Query Frame = 3
Query:   12 QSWGPLFGKLFFAIWVIAHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRVDPFTSDDTKANSNG----QCGINC 239
            +SWGPLFGKLFFA WVI HLYPFLKGL+GRQNRTPTIVIVWSILLASIFSLLWVR+DPF      A ++G    +CG++C
Sbjct: 1017 ESWGPLFGKLFFAFWVIVHLYPFLKGLVGRQNRTPTIVIVWSILLASIFSLLWVRIDPFL-----AKNDGPLLEECGLDC 1091          
BLAST of CX298467 vs. ExPASy Swiss-Prot
Match: CESA3_ORYSJ (Probable cellulose synthase A catalytic subunit 3 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA3 PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 7.034e-28
Identity = 59/80 (73.75%), Postives = 67/80 (83.75%), Query Frame = 3
Query:   12 QSWGPLFGKLFFAIWVIAHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRVDPFTSDDTKANSNG----QCGINC 239
            +SWGPLFGKLFFA WVI HLYPFLKGL+GRQNRTPTIVIVWSILLASIFSLLWVR+DPF      A ++G    +CG++C
Sbjct: 1018 ESWGPLFGKLFFAFWVIVHLYPFLKGLVGRQNRTPTIVIVWSILLASIFSLLWVRIDPFL-----AKNDGPLLEECGLDC 1092          
BLAST of CX298467 vs. ExPASy Swiss-Prot
Match: CESA4_ARATH (Cellulose synthase A catalytic subunit 4 [UDP-forming] OS=Arabidopsis thaliana GN=CESA4 PE=1 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.200e-27
Identity = 56/75 (74.67%), Postives = 63/75 (84.00%), Query Frame = 3
Query:   15 SWGPLFGKLFFAIWVIAHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRVDPFTSDDTKANSNGQCGINC 239
            SWGPLFGKLFFA WVI HLYPFLKGL+GRQNRTPTIV++WSILLASIFSL+WVR+DPF    T      QCG++C
Sbjct:  976 SWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVLWSILLASIFSLVWVRIDPFLPKQTGPLLK-QCGVDC 1049          
BLAST of CX298467 vs. ExPASy Swiss-Prot
Match: CESA4_ORYSJ (Cellulose synthase A catalytic subunit 4 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA4 PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 7.777e-27
Identity = 50/76 (65.79%), Postives = 62/76 (81.58%), Query Frame = 3
Query:   12 QSWGPLFGKLFFAIWVIAHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRVDPFTSDDTKANSNGQCGINC 239
            +SWGPLFGK+FFA+WVI HLYPFLKGL+GRQNRTPTIV++WS+LLAS+FSLLWV++DPF        +N     +C
Sbjct:  914 ESWGPLFGKVFFAMWVIMHLYPFLKGLMGRQNRTPTIVVLWSVLLASVFSLLWVKIDPFIGSSETTTTNSCANFDC 989          
BLAST of CX298467 vs. ExPASy Swiss-Prot
Match: CESA4_ORYSI (Cellulose synthase A catalytic subunit 4 [UDP-forming] OS=Oryza sativa subsp. indica GN=CESA4 PE=2 SV=2)

HSP 1 Score: 120.553 bits (301), Expect = 7.777e-27
Identity = 50/76 (65.79%), Postives = 62/76 (81.58%), Query Frame = 3
Query:   12 QSWGPLFGKLFFAIWVIAHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRVDPFTSDDTKANSNGQCGINC 239
            +SWGPLFGK+FFA+WVI HLYPFLKGL+GRQNRTPTIV++WS+LLAS+FSLLWV++DPF        +N     +C
Sbjct:  914 ESWGPLFGKVFFAMWVIMHLYPFLKGLMGRQNRTPTIVVLWSVLLASVFSLLWVKIDPFIGSSETTTTNSCANFDC 989          
BLAST of CX298467 vs. ExPASy Swiss-Prot
Match: CESA7_ORYSJ (Cellulose synthase A catalytic subunit 7 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA7 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.955e-26
Identity = 54/75 (72.00%), Postives = 62/75 (82.67%), Query Frame = 3
Query:   15 SWGPLFGKLFFAIWVIAHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRVDPFTSDDTKANSNGQCGINC 239
            SWGPLFGKLFF+ WVI HLYPFLKGL+GRQNRTPTIV++WSILLASIFSL+WVR+DPF     K      CG++C
Sbjct:  990 SWGPLFGKLFFSFWVILHLYPFLKGLMGRQNRTPTIVVLWSILLASIFSLVWVRIDPFI-PKPKGPVLKPCGVSC 1063          
BLAST of CX298467 vs. ExPASy Swiss-Prot
Match: CESAA_ARATH (Probable cellulose synthase A catalytic subunit 10 [UDP-forming] OS=Arabidopsis thaliana GN=CESA10 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 8.598e-26
Identity = 53/61 (86.89%), Postives = 56/61 (91.80%), Query Frame = 3
Query:   12 QSWGPLFGKLFFAIWVIAHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRVDPFTS 194
            QSWGPL GKL FA WV+AHLYPFLKGLLGRQNRTPTIVIVWS LLASIFSLLWVR++PF S
Sbjct:  993 QSWGPLMGKLLFAFWVVAHLYPFLKGLLGRQNRTPTIVIVWSALLASIFSLLWVRINPFVS 1053          
BLAST of CX298467 vs. ExPASy Swiss-Prot
Match: CESA8_ARATH (Cellulose synthase A catalytic subunit 8 [UDP-forming] OS=Arabidopsis thaliana GN=CESA8 PE=1 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.915e-25
Identity = 54/77 (70.13%), Postives = 65/77 (84.42%), Query Frame = 3
Query:   12 QSWGPLFGKLFFAIWVIAHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRVDPFTS-DDTKANSNGQCGINC 239
            ++WGPLFGK+FFA WVI HLYPFLKGL+GRQNRTPTIVI+WSILLAS+FSL+WVR++PF S  DT + S     I+C
Sbjct:  909 EAWGPLFGKVFFAFWVILHLYPFLKGLMGRQNRTPTIVILWSILLASVFSLVWVRINPFVSKTDTTSLSLNCLLIDC 985          
The following BLAST results are available for this feature:
BLAST of CX298467 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
CESA6_ORYSJ1.851e-2875.00Probable cellulose synthase A catalytic subunit 6 ... [more]
CESA5_ORYSJ7.034e-2873.75Probable cellulose synthase A catalytic subunit 5 ... [more]
CESA5_ORYSI7.034e-2873.75Probable cellulose synthase A catalytic subunit 5 ... [more]
CESA3_ORYSJ7.034e-2873.75Probable cellulose synthase A catalytic subunit 3 ... [more]
CESA4_ARATH1.200e-2774.67Cellulose synthase A catalytic subunit 4 [UDP-form... [more]
CESA4_ORYSJ7.777e-2765.79Cellulose synthase A catalytic subunit 4 [UDP-form... [more]
CESA4_ORYSI7.777e-2765.79Cellulose synthase A catalytic subunit 4 [UDP-form... [more]
CESA7_ORYSJ2.955e-2672.00Cellulose synthase A catalytic subunit 7 [UDP-form... [more]
CESAA_ARATH8.598e-2686.89Probable cellulose synthase A catalytic subunit 10... [more]
CESA8_ARATH1.915e-2570.13Cellulose synthase A catalytic subunit 8 [UDP-form... [more]

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Properties
Property NameValue
Genbank descriptionC06012E05SK RindPdig24 Citrus clementina cDNA clone C06012E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298467 ID=CX298467; Name=CX298467; organism=Citrus clementina; type=EST; length=674bp
GAGGGTGGCTCCAATCATGGGGTCCACTCTTTGGCAAGCTATTCTTTGCC
ATATGGGTCATTGCCCATCTGTATCCTTTCCTGAAGGGTCTGTTGGGTCG
TCAAAACCGCACACCAACAATTGTCATTGTGTGGTCTATCCTACTTGCTT
CCATTTTCTCCTTGCTGTGGGTGCGTGTTGATCCCTTTACCTCTGATGAC
ACCAAAGCCAATTCAAACGGTCAATGTGGCATCAATTGCTAGTGCATGTT
GGATGATTATTTGTGGCTTCAAATGCCATTCTTCCTTCAAGCTCTCATCA
GTGTATATGAGAAGAAATTATGTCATTGGGAAATGATCGTAAGTTAATTT
ACTTCTCGTCGGTCTGGAGAAAGGAGTTTGATGATATGGGATCTTTTCAT
TTGTCGTGGAGCCTACTAAGGAGGACTTGAGGCTTTAGTAAAACCCTTTT
TGTATCTTATTTAATATTTATTCTTATATCGTTTTGTAACTTCCGTACAG
ATGCTAGATGTTGGTCCCTACTTGTTTAGTTGTGTTGGACCTAAGTTGTG
AAGCTCCATTTTCTCAAGTTCAGAGCGCTAAGAAACAATGTAATCCTCTG
TTTGTGAAAAAAAAAAATGTTACATTCTGCTGTTATGAGATGGTATTATG
GTCAAAAAAAAAAAAAAAAAAAAA
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