CX298467

Overview
NameCX298467
Unique NameCX298467
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length674
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX298467 vs. ExPASy Swiss-Prot
Match: CESA9_ARATH (Probable cellulose synthase A catalytic subunit 9 [UDP-forming] OS=Arabidopsis thaliana GN=CESA9 PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.267e-25
Identity = 52/75 (69.33%), Postives = 62/75 (82.67%), Query Frame = 3
Query:   15 SWGPLFGKLFFAIWVIAHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRVDPFTSDDTKANSNGQCGINC 239
            SWGPLFG+LFFA+WVI HLYPFLKGLLG+Q+R PTI++VWSILLASI +LLWVRV+PF S D        CG++C
Sbjct: 1014 SWGPLFGRLFFALWVIVHLYPFLKGLLGKQDRVPTIILVWSILLASILTLLWVRVNPFVSKDGPVLE--ICGLDC 1086          
BLAST of CX298467 vs. ExPASy Swiss-Prot
Match: CESA2_ARATH (Cellulose synthase A catalytic subunit 2 [UDP-forming] OS=Arabidopsis thaliana GN=CESA2 PE=1 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.162e-24
Identity = 49/75 (65.33%), Postives = 61/75 (81.33%), Query Frame = 3
Query:   15 SWGPLFGKLFFAIWVIAHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRVDPFTSDDTKANSNGQCGINC 239
            SWGPLFG+LFFA+WVI HLYPFLKG+LG+Q++ PTI++VWSILLASI +LLWVRV+PF +          CG+NC
Sbjct: 1010 SWGPLFGRLFFALWVIVHLYPFLKGMLGKQDKMPTIIVVWSILLASILTLLWVRVNPFVAKGGPVLE--ICGLNC 1082          
BLAST of CX298467 vs. ExPASy Swiss-Prot
Match: CESA6_ARATH (Cellulose synthase A catalytic subunit 6 [UDP-forming] OS=Arabidopsis thaliana GN=CESA6 PE=1 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 1.051e-23
Identity = 50/75 (66.67%), Postives = 61/75 (81.33%), Query Frame = 3
Query:   15 SWGPLFGKLFFAIWVIAHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRVDPFTSDDTKANSNGQCGINC 239
            SWGPLFG+LFFA+WVI HLYPFLKGLLG+Q+R PTI++VWSILLASI +LLWVRV+PF +          CG++C
Sbjct: 1011 SWGPLFGRLFFALWVIIHLYPFLKGLLGKQDRMPTIIVVWSILLASILTLLWVRVNPFVAKGGPILE--ICGLDC 1083          
BLAST of CX298467 vs. ExPASy Swiss-Prot
Match: CESA5_ARATH (Cellulose synthase A catalytic subunit 5 [UDP-forming] OS=Arabidopsis thaliana GN=CESA5 PE=1 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 2.342e-23
Identity = 50/75 (66.67%), Postives = 60/75 (80.00%), Query Frame = 3
Query:   15 SWGPLFGKLFFAIWVIAHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRVDPFTSDDTKANSNGQCGINC 239
            SWGPLFG+LFFA WVI HLYPFLKGLLG+Q+R PTI++VWSILLASI +LLWVRV+PF +          CG++C
Sbjct:  996 SWGPLFGRLFFAFWVILHLYPFLKGLLGKQDRMPTIILVWSILLASILTLLWVRVNPFVAKGGPILE--ICGLDC 1068          
BLAST of CX298467 vs. ExPASy Swiss-Prot
Match: CSLD2_ORYSJ (Cellulose synthase-like protein D2 OS=Oryza sativa subsp. japonica GN=CSLD2 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.054e-15
Identity = 36/59 (61.02%), Postives = 44/59 (74.58%), Query Frame = 3
Query:    9 LQSWGPLFGKLFFAIWVIAHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRVDP 185
            +  W  L G +FF+ WV+AHLYPF KGL+GR+ RTPTIV VWS LLA   SLLWV ++P
Sbjct: 1098 IPQWSKLLGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVFVWSGLLAITISLLWVAINP 1156          
BLAST of CX298467 vs. ExPASy Swiss-Prot
Match: CSLD2_ORYSI (Cellulose synthase-like protein D2 OS=Oryza sativa subsp. indica GN=CSLD2 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.054e-15
Identity = 36/59 (61.02%), Postives = 44/59 (74.58%), Query Frame = 3
Query:    9 LQSWGPLFGKLFFAIWVIAHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRVDP 185
            +  W  L G +FF+ WV+AHLYPF KGL+GR+ RTPTIV VWS LLA   SLLWV ++P
Sbjct: 1098 IPQWSKLLGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVFVWSGLLAITISLLWVAINP 1156          
BLAST of CX298467 vs. ExPASy Swiss-Prot
Match: CSLD1_ORYSJ (Cellulose synthase-like protein D1 OS=Oryza sativa subsp. japonica GN=CSLD1 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.347e-15
Identity = 38/74 (51.35%), Postives = 48/74 (64.86%), Query Frame = 3
Query:    9 LQSWGPLFGKLFFAIWVIAHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRVDPFTSDDTKANSNGQCG 230
            +  W  L G +FF+ WV+AHLYPF KGL+GR+ RTPTIV VWS L+A   SLLW+ + P       A +N Q G
Sbjct: 1053 IPQWSKLLGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVYVWSGLVAITISLLWIAIKP-----PSAQANSQLG 1121          
BLAST of CX298467 vs. ExPASy Swiss-Prot
Match: CSLD1_ORYSI (Cellulose synthase-like protein D1 OS=Oryza sativa subsp. indica GN=CSLD1 PE=2 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 2.347e-15
Identity = 38/74 (51.35%), Postives = 48/74 (64.86%), Query Frame = 3
Query:    9 LQSWGPLFGKLFFAIWVIAHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRVDPFTSDDTKANSNGQCG 230
            +  W  L G +FF+ WV+AHLYPF KGL+GR+ RTPTIV VWS L+A   SLLW+ + P       A +N Q G
Sbjct: 1053 IPQWSKLLGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVYVWSGLVAITISLLWIAIKP-----PSAQANSQLG 1121          
BLAST of CX298467 vs. ExPASy Swiss-Prot
Match: CSLD3_ARATH (Cellulose synthase-like protein D3 OS=Arabidopsis thaliana GN=CSLD3 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.065e-15
Identity = 35/59 (59.32%), Postives = 44/59 (74.58%), Query Frame = 3
Query:    9 LQSWGPLFGKLFFAIWVIAHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRVDP 185
            +  W  L G +FF+ WV+AHLYPF KGL+GR+ RTPTIV VWS L+A   SLLWV ++P
Sbjct: 1073 IPQWSKLIGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVYVWSGLVAITISLLWVAINP 1131          
BLAST of CX298467 vs. ExPASy Swiss-Prot
Match: CSLD2_ARATH (Cellulose synthase-like protein D2 OS=Arabidopsis thaliana GN=CSLD2 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.003e-15
Identity = 35/56 (62.50%), Postives = 43/56 (76.79%), Query Frame = 3
Query:   18 WGPLFGKLFFAIWVIAHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRVDP 185
            W  L G +FF+ WV+AHLYPF KGL+GR+ RTPTIV VWS L+A   SLLWV ++P
Sbjct: 1076 WSKLIGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVYVWSGLVAITISLLWVAINP 1131          
The following BLAST results are available for this feature:
BLAST of CX298467 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
CESA9_ARATH4.267e-2569.33Probable cellulose synthase A catalytic subunit 9 ... [more]
CESA2_ARATH6.162e-2465.33Cellulose synthase A catalytic subunit 2 [UDP-form... [more]
CESA6_ARATH1.051e-2366.67Cellulose synthase A catalytic subunit 6 [UDP-form... [more]
CESA5_ARATH2.342e-2366.67Cellulose synthase A catalytic subunit 5 [UDP-form... [more]
CSLD2_ORYSJ1.054e-1561.02Cellulose synthase-like protein D2 OS=Oryza sativa... [more]
CSLD2_ORYSI1.054e-1561.02Cellulose synthase-like protein D2 OS=Oryza sativa... [more]
CSLD1_ORYSJ2.347e-1551.35Cellulose synthase-like protein D1 OS=Oryza sativa... [more]
CSLD1_ORYSI2.347e-1551.35Cellulose synthase-like protein D1 OS=Oryza sativa... [more]
CSLD3_ARATH3.065e-1559.32Cellulose synthase-like protein D3 OS=Arabidopsis ... [more]
CSLD2_ARATH4.003e-1562.50Cellulose synthase-like protein D2 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionC06012E05SK RindPdig24 Citrus clementina cDNA clone C06012E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298467 ID=CX298467; Name=CX298467; organism=Citrus clementina; type=EST; length=674bp
GAGGGTGGCTCCAATCATGGGGTCCACTCTTTGGCAAGCTATTCTTTGCC
ATATGGGTCATTGCCCATCTGTATCCTTTCCTGAAGGGTCTGTTGGGTCG
TCAAAACCGCACACCAACAATTGTCATTGTGTGGTCTATCCTACTTGCTT
CCATTTTCTCCTTGCTGTGGGTGCGTGTTGATCCCTTTACCTCTGATGAC
ACCAAAGCCAATTCAAACGGTCAATGTGGCATCAATTGCTAGTGCATGTT
GGATGATTATTTGTGGCTTCAAATGCCATTCTTCCTTCAAGCTCTCATCA
GTGTATATGAGAAGAAATTATGTCATTGGGAAATGATCGTAAGTTAATTT
ACTTCTCGTCGGTCTGGAGAAAGGAGTTTGATGATATGGGATCTTTTCAT
TTGTCGTGGAGCCTACTAAGGAGGACTTGAGGCTTTAGTAAAACCCTTTT
TGTATCTTATTTAATATTTATTCTTATATCGTTTTGTAACTTCCGTACAG
ATGCTAGATGTTGGTCCCTACTTGTTTAGTTGTGTTGGACCTAAGTTGTG
AAGCTCCATTTTCTCAAGTTCAGAGCGCTAAGAAACAATGTAATCCTCTG
TTTGTGAAAAAAAAAAATGTTACATTCTGCTGTTATGAGATGGTATTATG
GTCAAAAAAAAAAAAAAAAAAAAA
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