CX298467

Overview
NameCX298467
Unique NameCX298467
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length674
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX298467 vs. ExPASy Swiss-Prot
Match: CSLD4_ARATH (Cellulose synthase-like protein D4 OS=Arabidopsis thaliana GN=CSLD4 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.165e-14
Identity = 36/71 (50.70%), Postives = 45/71 (63.38%), Query Frame = 3
Query:   18 WGPLFGKLFFAIWVIAHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRVDPFTSDDTKANSNGQCG 230
            W  L G  FF+ WV+AHLYPF KGL+GR+ +TPTIV VW+ L+A   SLLW  ++P T     A   G  G
Sbjct: 1037 WSKLIGGAFFSFWVLAHLYPFAKGLMGRRGKTPTIVFVWAGLIAITISLLWTAINPNTGPAAAAEGVGGGG 1107          
BLAST of CX298467 vs. ExPASy Swiss-Prot
Match: CSLD4_ORYSJ (Cellulose synthase-like protein D4 OS=Oryza sativa subsp. japonica GN=CSLD4 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.521e-14
Identity = 34/56 (60.71%), Postives = 41/56 (73.21%), Query Frame = 3
Query:   18 WGPLFGKLFFAIWVIAHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRVDP 185
            W  L G  FF+ WV+ HLYPF KGLLGR+ R PTIV VWS L++ I SLLWV ++P
Sbjct: 1144 WSKLLGGAFFSFWVLCHLYPFAKGLLGRRGRVPTIVFVWSGLISMIISLLWVYINP 1199          
BLAST of CX298467 vs. ExPASy Swiss-Prot
Match: CSLD5_ARATH (Cellulose synthase-like protein D5 OS=Arabidopsis thaliana GN=CSLD5 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.987e-14
Identity = 34/56 (60.71%), Postives = 42/56 (75.00%), Query Frame = 3
Query:   18 WGPLFGKLFFAIWVIAHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRVDP 185
            W  L G +FF+ WV+ HLYPF KGL+GR+ R PTIV VWS LL+ I SLLWV ++P
Sbjct: 1113 WSKLVGGVFFSFWVLCHLYPFAKGLMGRRGRVPTIVFVWSGLLSIIVSLLWVYINP 1168          
BLAST of CX298467 vs. ExPASy Swiss-Prot
Match: CSLD3_ORYSJ (Cellulose synthase-like protein D3 OS=Oryza sativa subsp. japonica GN=CSLD3 PE=2 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 1.987e-14
Identity = 38/68 (55.88%), Postives = 46/68 (67.65%), Query Frame = 3
Query:   18 WGPLFGKLFFAIWVIAHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRVDPFTSDDTKANSNG 221
            WG   G  FF+ WV+AHL PF KGL+GR+ +TPTIV VWS LL+   SLLWV + P      +ANSNG
Sbjct: 1075 WGKFIGGGFFSFWVLAHLNPFAKGLMGRRGKTPTIVFVWSGLLSITVSLLWVAISP-----PEANSNG 1137          
BLAST of CX298467 vs. ExPASy Swiss-Prot
Match: CSLD1_ARATH (Cellulose synthase-like protein D1 OS=Arabidopsis thaliana GN=CSLD1 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.781e-14
Identity = 30/59 (50.85%), Postives = 43/59 (72.88%), Query Frame = 3
Query:    9 LQSWGPLFGKLFFAIWVIAHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRVDP 185
            +  WG L G +FF++WV+ H+YPF KGL+GR+ + PTIV VWS L++   SLLW+ + P
Sbjct:  966 IPQWGKLMGGIFFSLWVLTHMYPFAKGLMGRRGKVPTIVYVWSGLVSITVSLLWITISP 1024          
BLAST of CX298467 vs. ExPASy Swiss-Prot
Match: CSLD5_ORYSJ (Cellulose synthase-like protein D5 OS=Oryza sativa subsp. japonica GN=CSLD5 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.172e-12
Identity = 33/67 (49.25%), Postives = 45/67 (67.16%), Query Frame = 3
Query:    9 LQSWGPLFGKLFFAIWVIAHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRVDPFTSDDTKA 209
            +  +  L G  FF+ WV+AH YPF KGL+GR+ RTPTIV VW+ L++   SLLW+ + P   DD+ A
Sbjct:  942 IPQYSKLLGGGFFSFWVLAHYYPFAKGLMGRRGRTPTIVYVWAGLISITVSLLWITISP--PDDSVA 1006          
BLAST of CX298467 vs. ExPASy Swiss-Prot
Match: CSLD5_ORYSI (Putative cellulose synthase-like protein D5 OS=Oryza sativa subsp. indica GN=CSLD5 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.172e-12
Identity = 33/67 (49.25%), Postives = 45/67 (67.16%), Query Frame = 3
Query:    9 LQSWGPLFGKLFFAIWVIAHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRVDPFTSDDTKA 209
            +  +  L G  FF+ WV+AH YPF KGL+GR+ RTPTIV VW+ L++   SLLW+ + P   DD+ A
Sbjct:  942 IPQYSKLLGGGFFSFWVLAHYYPFAKGLMGRRGRTPTIVYVWAGLISITVSLLWITISP--PDDSVA 1006          
BLAST of CX298467 vs. ExPASy Swiss-Prot
Match: CSLD6_ARATH (Putative cellulose synthase-like protein D6 OS=Arabidopsis thaliana GN=CSLD6 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.685e-11
Identity = 29/54 (53.70%), Postives = 38/54 (70.37%), Query Frame = 3
Query:   18 WGPLFGKLFFAIWVIAHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRV 179
            W  L G  FFA WV+ H+YPF KGL+GR  +TPT+V VWS L+A   SLL++ +
Sbjct:  913 WSNLLGGTFFASWVLLHMYPFAKGLMGRGGKTPTVVYVWSGLIAICLSLLYITI 966          
BLAST of CX298467 vs. ExPASy Swiss-Prot
Match: CESAB_ORYSJ (Putative cellulose synthase A catalytic subunit 11 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA11 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.507e-11
Identity = 32/65 (49.23%), Postives = 44/65 (67.69%), Query Frame = 3
Query:    3 GWLQSWGPLFGKLFFAIWVIAHLYPFLKGLLGRQNRT-PTIVIVWSILLASIFSLLWVRVDPFTS 194
            G+ QSWG L  KL  A WV+AHL  FL+GLL  ++R  PTI ++WS++  S+ SLLWV    F++
Sbjct:  784 GYYQSWGALGAKLALAGWVVAHLQGFLRGLLAPRDRAPPTIAVLWSVVFVSVASLLWVHAASFSA 848          
The following BLAST results are available for this feature:
BLAST of CX298467 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
CSLD4_ARATH1.165e-1450.70Cellulose synthase-like protein D4 OS=Arabidopsis ... [more]
CSLD4_ORYSJ1.521e-1460.71Cellulose synthase-like protein D4 OS=Oryza sativa... [more]
CSLD5_ARATH1.987e-1460.71Cellulose synthase-like protein D5 OS=Arabidopsis ... [more]
CSLD3_ORYSJ1.987e-1455.88Cellulose synthase-like protein D3 OS=Oryza sativa... [more]
CSLD1_ARATH5.781e-1450.85Cellulose synthase-like protein D1 OS=Arabidopsis ... [more]
CSLD5_ORYSJ3.172e-1249.25Cellulose synthase-like protein D5 OS=Oryza sativa... [more]
CSLD5_ORYSI3.172e-1249.25Putative cellulose synthase-like protein D5 OS=Ory... [more]
CSLD6_ARATH2.685e-1153.70Putative cellulose synthase-like protein D6 OS=Ara... [more]
CESAB_ORYSJ3.507e-1149.23Putative cellulose synthase A catalytic subunit 11... [more]

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Properties
Property NameValue
Genbank descriptionC06012E05SK RindPdig24 Citrus clementina cDNA clone C06012E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298467 ID=CX298467; Name=CX298467; organism=Citrus clementina; type=EST; length=674bp
GAGGGTGGCTCCAATCATGGGGTCCACTCTTTGGCAAGCTATTCTTTGCC
ATATGGGTCATTGCCCATCTGTATCCTTTCCTGAAGGGTCTGTTGGGTCG
TCAAAACCGCACACCAACAATTGTCATTGTGTGGTCTATCCTACTTGCTT
CCATTTTCTCCTTGCTGTGGGTGCGTGTTGATCCCTTTACCTCTGATGAC
ACCAAAGCCAATTCAAACGGTCAATGTGGCATCAATTGCTAGTGCATGTT
GGATGATTATTTGTGGCTTCAAATGCCATTCTTCCTTCAAGCTCTCATCA
GTGTATATGAGAAGAAATTATGTCATTGGGAAATGATCGTAAGTTAATTT
ACTTCTCGTCGGTCTGGAGAAAGGAGTTTGATGATATGGGATCTTTTCAT
TTGTCGTGGAGCCTACTAAGGAGGACTTGAGGCTTTAGTAAAACCCTTTT
TGTATCTTATTTAATATTTATTCTTATATCGTTTTGTAACTTCCGTACAG
ATGCTAGATGTTGGTCCCTACTTGTTTAGTTGTGTTGGACCTAAGTTGTG
AAGCTCCATTTTCTCAAGTTCAGAGCGCTAAGAAACAATGTAATCCTCTG
TTTGTGAAAAAAAAAAATGTTACATTCTGCTGTTATGAGATGGTATTATG
GTCAAAAAAAAAAAAAAAAAAAAA
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