CX298468

Overview
NameCX298468
Unique NameCX298468
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length714
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_WOLPM (50S ribosomal protein L20 OS=Wolbachia pipientis wMel GN=rplT PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.847e-29
Identity = 61/97 (62.89%), Postives = 76/97 (78.35%), Query Frame = -3
Query:  335 KEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVD 625
            K+I KLAKG+RGRAK+C RIA +RVEKALQY+YRDRR +KRD RSLWI RINA  R+HG+ YG FMHGL    I LNRK+L+E++++    F  LV+
Sbjct:   15 KKILKLAKGYRGRAKSCYRIALQRVEKALQYAYRDRRTRKRDFRSLWIIRINAAAREHGLTYGRFMHGLTLAGIDLNRKILAEMAVNYKDDFAKLVE 111          
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_METRJ (50S ribosomal protein L20 OS=Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831) GN=rplT PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.413e-29
Identity = 59/106 (55.66%), Postives = 80/106 (75.47%), Query Frame = -3
Query:  308 KEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNAFPGN 625
            K++ K AKG+ GR KN IRIA++ VEK +QY+YRDR+NKKR  R+LWIQR+NA  R+HG+ Y  F+ GL K  I ++RK LSEL++HEP SF A+V+ ++ A P N
Sbjct:   15 KKVLKAAKGYYGRRKNTIRIAKQAVEKGMQYAYRDRKNKKRTFRALWIQRLNAAVREHGLTYSRFIDGLAKSGIVVDRKALSELAIHEPASFAAVVEKAKAALPQN 120          
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_ORITB (50S ribosomal protein L20 OS=Orientia tsutsugamushi (strain Boryong) GN=rplT PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.116e-29
Identity = 60/109 (55.05%), Postives = 83/109 (76.15%), Query Frame = -3
Query:  320 KRERMNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNA 646
            K  +   K+I KLAKG+RGRAKNC RIA ++VEKALQYSYRDRRN+KR  R+LWIQRINA  RQ+ + Y  F++GL + NI ++RKV++ L++H   SF  LV++++ +
Sbjct:    8 KVNKNRHKKILKLAKGYRGRAKNCFRIAIQKVEKALQYSYRDRRNRKRQFRALWIQRINAAVRQYDMTYSQFINGLKQANITVDRKVMANLAVHNADSFVHLVELTKKS 116          
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_METPB (50S ribosomal protein L20 OS=Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) GN=rplT PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.116e-29
Identity = 57/104 (54.81%), Postives = 81/104 (77.88%), Query Frame = -3
Query:  314 KEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNAFP 625
            K++ K AKG+ GR KN IRIA++ VEK LQY+YRDR+NKKR  R+LWIQR+NA  R+HG+ Y  F++ L K  I+++RK LSEL++HEP +F A+V+ +++A P
Sbjct:   15 KKVLKAAKGYYGRRKNTIRIAKQAVEKGLQYAYRDRKNKKRTFRALWIQRLNAAVREHGLTYSRFINALAKSGIEVDRKALSELAIHEPAAFAAVVEKAKSALP 118          
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_WOLTR (50S ribosomal protein L20 OS=Wolbachia sp. subsp. Brugia malayi (strain TRS) GN=rplT PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 5.375e-29
Identity = 59/97 (60.82%), Postives = 75/97 (77.32%), Query Frame = -3
Query:  335 KEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVD 625
            K+I  LAKG+RGRAK+C RIA +RVEKALQY+YRDRRN+KRD RSLWI RINA  R+HG+ YG FMHGL    + LNRK+L+E++++    F  L +
Sbjct:   15 KKILNLAKGYRGRAKSCYRIALQRVEKALQYAYRDRRNRKRDFRSLWIIRINAAAREHGLTYGRFMHGLALAGVDLNRKILAEMAVNYKDDFTKLAE 111          
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_METEP (50S ribosomal protein L20 OS=Methylobacterium extorquens (strain PA1) GN=rplT PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.197e-28
Identity = 56/104 (53.85%), Postives = 81/104 (77.88%), Query Frame = -3
Query:  314 KEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNAFP 625
            K++ K AKG+ GR KN IRIA++ VEK LQY+YRDR+NKKR  R+LWIQR+NA  R+HG+ Y  F++ L +  I+++RK LSEL++HEP +F A+V+ +++A P
Sbjct:   15 KKVLKAAKGYYGRRKNTIRIAKQAVEKGLQYAYRDRKNKKRTFRALWIQRLNAAVREHGLTYSRFINALAQSGIEVDRKALSELAIHEPAAFAAVVEKAKSALP 118          
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_MARMM (50S ribosomal protein L20 OS=Maricaulis maris (strain MCS10) GN=rplT PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.197e-28
Identity = 61/102 (59.80%), Postives = 80/102 (78.43%), Query Frame = -3
Query:  320 KEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNA 625
            K + K AKG+ GR KN  R+A + VEKA QY+YRDRR KKR+ R+LWIQRINAG RQH ++Y  FM+GL K  I+++RKVL++++MHEP +FKALVD +R A
Sbjct:   15 KSVIKKAKGYYGRRKNTFRVAVQAVEKAGQYAYRDRRAKKRNFRALWIQRINAGARQHEMSYSVFMNGLTKAGIEVDRKVLADIAMHEPDAFKALVDQARAA 116          
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_METS4 (50S ribosomal protein L20 OS=Methylobacterium sp. (strain 4-46) GN=rplT PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.564e-28
Identity = 58/104 (55.77%), Postives = 79/104 (75.96%), Query Frame = -3
Query:  314 KEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNAFP 625
            K++ K AKG+ GR KN IRIA++ VEK LQY+YRDR+N+KR+ RSLWIQR+NA  R+HG+ Y   + GL K  I ++RK LSEL++HEP +F A+V+ +R A P
Sbjct:   15 KKVLKAAKGYYGRRKNTIRIAKQAVEKGLQYAYRDRKNRKRNFRSLWIQRLNAAAREHGLTYSRLIDGLAKAGIVVDRKALSELAIHEPAAFAAVVEQARAALP 118          
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_METNO (50S ribosomal protein L20 OS=Methylobacterium nodulans (strain ORS2060 / LMG 21967) GN=rplT PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.564e-28
Identity = 57/104 (54.81%), Postives = 79/104 (75.96%), Query Frame = -3
Query:  314 KEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNAFP 625
            K++ K AKG+ GR KN IRIA++ VEK LQY+YRDR+N+KR  R+LWIQR+NA  R+HG+ Y  F+ GL K  I ++RK LSEL++HEP +F A+V+ ++ A P
Sbjct:   15 KKVLKAAKGYYGRRKNTIRIAKQAVEKGLQYAYRDRKNRKRSFRALWIQRLNAAVREHGLTYSRFIDGLAKAGIVVDRKALSELAIHEPAAFSAVVEKAKAALP 118          
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_MAGSA (50S ribosomal protein L20 OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=rplT PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.043e-28
Identity = 59/102 (57.84%), Postives = 82/102 (80.39%), Query Frame = -3
Query:  320 KEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNA 625
            K+I KLAKG+RGR+  C R+A ++VEKAL+Y+YRDRR KKR+ R+LWIQRINAG+R +G+ Y  FM GL K  I L+RKVLS++++ EP +FK+LV+ ++ A
Sbjct:   15 KKILKLAKGYRGRSSTCFRVAIQKVEKALRYAYRDRRAKKRNFRALWIQRINAGSRAYGLPYSRFMDGLKKAGIALDRKVLSDIAIREPDAFKSLVEKAQAA 116          
The following BLAST results are available for this feature:
BLAST of CX298468 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL20_WOLPM1.847e-2962.8950S ribosomal protein L20 OS=Wolbachia pipientis w... [more]
RL20_METRJ2.413e-2955.6650S ribosomal protein L20 OS=Methylobacterium radi... [more]
RL20_ORITB4.116e-2955.0550S ribosomal protein L20 OS=Orientia tsutsugamush... [more]
RL20_METPB4.116e-2954.8150S ribosomal protein L20 OS=Methylobacterium popu... [more]
RL20_WOLTR5.375e-2960.8250S ribosomal protein L20 OS=Wolbachia sp. subsp. ... [more]
RL20_METEP1.197e-2853.8550S ribosomal protein L20 OS=Methylobacterium exto... [more]
RL20_MARMM1.197e-2859.8050S ribosomal protein L20 OS=Maricaulis maris (str... [more]
RL20_METS41.564e-2855.7750S ribosomal protein L20 OS=Methylobacterium sp. ... [more]
RL20_METNO1.564e-2854.8150S ribosomal protein L20 OS=Methylobacterium nodu... [more]
RL20_MAGSA2.043e-2857.8450S ribosomal protein L20 OS=Magnetospirillum magn... [more]

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Properties
Property NameValue
Genbank descriptionC06012E06SK RindPdig24 Citrus clementina cDNA clone C06012E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298468 ID=CX298468; Name=CX298468; organism=Citrus clementina; type=EST; length=714bp
TTTTTTTTTGATATAACCACATCGCTATTCTTAGATAAGAAAAAGCTCAA
CCTTAACATGCAAGACATGAAGACAATCAGGAAACTTGCAATATCTGATT
TCAAACATTATCAACCACAAAGGTACTTATCAGTGTTGACCCTCAATTCT
TTACAAAACACATAAGCAGTCTAACTGTGTTCGCCATGACGCATCCCTTG
CATTCCAGTAATATTAAAATACTAAAGAATGCAATATTCGGGTCACTAAT
TACTAACTACGCATTGATTGAAATGTCAGCCTTTCTGGGAGGATGCACAA
TATTTTTGTTTCCAGGGAAGGCATTGCGAGAGATGTCTACAAGGGCCTTG
AAACTATATGGTTCATGCATCGACAGCTCTGACAGAACTTTCCTGTTCAG
TTGGATGTTCTCCTTCATCAGTCCATGCATAAAGTTACCATAGTTAACGC
CGTGTTGGCGAGTGCCGGCGTTGATGCGTTGAATCCAAAGGGAGCGCATG
TCACGCTTCTTGTTGCGGCGGTCTCTGTAGGAATACTGCAATGCTTTCTC
CACTCTCTCTCTTGCTATTCTTATGCAATTTTTCGCTCTTCCTCTGAACC
CCTTTGCCAGCTTAAATATCTCCTTCTTGTTCATCCTTTCTCTCTTTTCT
TTAATCCTTAAACAATGATGAATTCGTTCCTTCGATTCTCACTCTTCTCT
TCTCCTCTCTTCTC
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