CX298468

Overview
NameCX298468
Unique NameCX298468
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length714
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_NEIG1 (50S ribosomal protein L20 OS=Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090) GN=rplT PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.052e-24
Identity = 52/106 (49.06%), Postives = 79/106 (74.53%), Query Frame = -3
Query:  320 RMNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNA 637
            R   ++IF LAKG+RGR KN  R+A++ V KA QY+YRDRR +KR  R LWI RINAG R++G++Y  FM+GL + +I+++RKVL++L++ +  +F  LV+ ++ A
Sbjct:   11 RARHQKIFALAKGYRGRRKNVYRVAKQAVMKAGQYAYRDRRQRKRQFRQLWIVRINAGARENGLSYSKFMNGLKRASIEIDRKVLADLAVFDKAAFAQLVEKAKAA 116          
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_ZYMMO (50S ribosomal protein L20 OS=Zymomonas mobilis GN=rplT PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.986e-24
Identity = 56/108 (51.85%), Postives = 74/108 (68.52%), Query Frame = -3
Query:  314 RMNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNAFP 637
            R     I   AKG+ GR KN IRIAR+ VEKA QY+YRDR+ KKR  R+LWIQRINA  R  G+ YG FM+GL    + L+RKVL++L+M+E  +F A++   ++A P
Sbjct:   11 RAKHNRILDQAKGYYGRRKNTIRIARQAVEKAGQYAYRDRKVKKRSFRALWIQRINAAVRAEGLTYGVFMYGLKLAGLDLDRKVLADLAMNESAAFGAIIAQVKSALP 118          
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_ROSS1 (50S ribosomal protein L20 OS=Roseiflexus sp. (strain RS-1) GN=rplT PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.986e-24
Identity = 50/106 (47.17%), Postives = 75/106 (70.75%), Query Frame = -3
Query:  320 RMNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNA 637
            R   K++ + AKG+RG     +++ARE V KAL Y+YRDRRN+KRD R LWI RINA  R HG++Y  FM+GL +  I L+RK+L+++++ +P +F  +V+ +R A
Sbjct:   11 RKRHKKLLEQAKGYRGSRSRRVKVARETVMKALWYAYRDRRNRKRDFRRLWIVRINAAARMHGMSYSRFMNGLKRAGIDLDRKILADMAVRDPAAFSRVVEQARQA 116          
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_RHOP2 (50S ribosomal protein L20 OS=Rhodopseudomonas palustris (strain HaA2) GN=rplT PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.986e-24
Identity = 53/102 (51.96%), Postives = 76/102 (74.51%), Query Frame = -3
Query:  320 KEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNA 625
            K+++K AKGFRGR KN IR A+  V+KA QY++RDR+ KKR  R+LWIQRINA  R  G+ Y  F++GL K  I ++RKVLS+L++ EP +F+A+ + ++ A
Sbjct:   15 KKVYKAAKGFRGRRKNTIRAAKAAVDKAGQYAFRDRKRKKRTFRALWIQRINAAVRPFGMTYSVFINGLSKSGIVVDRKVLSDLAITEPAAFQAIAEKAKAA 116          
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_NOVAD (50S ribosomal protein L20 OS=Novosphingobium aromaticivorans (strain DSM 12444) GN=rplT PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.986e-24
Identity = 54/108 (50.00%), Postives = 73/108 (67.59%), Query Frame = -3
Query:  314 RMNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNAFP 637
            R   K I   AKG+RGR KN IR+AR+ VEKA QY+YRDR+ KKR  R+LWIQRINA  R  G+ Y  F+HG     I+L+RK +++L+M+E   F A++  ++ A P
Sbjct:   11 RAKHKRILDQAKGYRGRRKNTIRVARQAVEKAGQYAYRDRKVKKRSFRALWIQRINAAVRAEGLTYSQFIHGAKLAGIELDRKAMADLAMNEGAIFNAVIAQAKAALP 118          
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_LEPCP (50S ribosomal protein L20 OS=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) GN=rplT PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.986e-24
Identity = 54/101 (53.47%), Postives = 72/101 (71.29%), Query Frame = -3
Query:  335 RMNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVD 637
            R   K++  LAKGFRGR KN  RIA++ V KA QY+YRDRR KKR  R LWI RINA +R  G+ Y  F+ GL K  I ++RKVLS++++H+P +F ++VD
Sbjct:   11 RARHKKVLALAKGFRGRRKNVYRIAKQAVMKAGQYAYRDRRAKKRVFRRLWIARINAASRSLGLTYSKFIAGLKKAQIDIDRKVLSDMAIHDPAAFGSIVD 111          
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_OLICO (50S ribosomal protein L20 OS=Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5) GN=rplT PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.206e-24
Identity = 51/102 (50.00%), Postives = 76/102 (74.51%), Query Frame = -3
Query:  320 KEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNA 625
            K+++K A+GFRGR KN IR A+  V+KA QY+Y  R+ KKR+ R+LWIQRINA  R  G+ Y  F++GL K  + ++RKVLS+L++HEP +F+A+ + ++ A
Sbjct:   15 KKVYKAAEGFRGRRKNTIRAAKAAVDKAQQYAYVGRKLKKRNFRALWIQRINAAVRPFGLTYSRFINGLAKSGVVIDRKVLSDLAIHEPAAFQAIAEKAKAA 116          
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_GLUDA (50S ribosomal protein L20 OS=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) GN=rplT PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.206e-24
Identity = 51/96 (53.12%), Postives = 72/96 (75.00%), Query Frame = -3
Query:  338 KEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALV 625
            K++ + +KGFRGR+    RIA ER+EKAL+Y+YRDRRNKKRD R+LWIQRINA  R+HG+ Y  F+ GL K  I+++RKVL+ ++  +  +F  +V
Sbjct:   15 KKVLEQSKGFRGRSSTNYRIALERLEKALRYAYRDRRNKKRDFRALWIQRINAAVREHGLTYSKFIFGLDKAGIEIDRKVLAAIAFDDAATFAEIV 110          
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_BUCCC (50S ribosomal protein L20 OS=Buchnera aphidicola subsp. Cinara cedri GN=rplT PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.206e-24
Identity = 52/102 (50.98%), Postives = 72/102 (70.59%), Query Frame = -3
Query:  320 KEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNA 625
            K++ KLAKG+ G      R+A + V K+ QYSYRDRRNKKRD R LWI RINA  + + ++Y  F++GL   +I +NRK+LSE+++ +  SFK LVD S+NA
Sbjct:   15 KKVIKLAKGYYGARSRVYRVANQAVIKSGQYSYRDRRNKKRDFRKLWIIRINAAVKNYNLSYSKFIYGLKLSSININRKILSEIAIFDKISFKKLVDYSKNA 116          
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_AQUAE (50S ribosomal protein L20 OS=Aquifex aeolicus GN=rplT PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.206e-24
Identity = 51/114 (44.74%), Postives = 79/114 (69.30%), Query Frame = -3
Query:  320 LRIKEKRERMNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNA 661
            +R+K    R  KK+I KLAKG+RG+     R A+E V +AL Y YRDR+ +KR+ R LWI RINA  R +G+NY  F++GL K  I+L+RK+L+++++ +P +F+ +V+  + A
Sbjct:    1 MRVKGPSSRRKKKKILKLAKGYRGQRSRSYRRAKEAVMRALYYQYRDRKLRKREFRRLWIARINAAVRAYGLNYSTFINGLKKAGIELDRKILADMAVRDPQAFEQVVNKVKEA 114          
The following BLAST results are available for this feature:
BLAST of CX298468 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL20_NEIG13.052e-2449.0650S ribosomal protein L20 OS=Neisseria gonorrhoeae... [more]
RL20_ZYMMO3.986e-2451.8550S ribosomal protein L20 OS=Zymomonas mobilis GN=... [more]
RL20_ROSS13.986e-2447.1750S ribosomal protein L20 OS=Roseiflexus sp. (stra... [more]
RL20_RHOP23.986e-2451.9650S ribosomal protein L20 OS=Rhodopseudomonas palu... [more]
RL20_NOVAD3.986e-2450.0050S ribosomal protein L20 OS=Novosphingobium aroma... [more]
RL20_LEPCP3.986e-2453.4750S ribosomal protein L20 OS=Leptothrix cholodnii ... [more]
RL20_OLICO5.206e-2450.0050S ribosomal protein L20 OS=Oligotropha carboxido... [more]
RL20_GLUDA5.206e-2453.1350S ribosomal protein L20 OS=Gluconacetobacter dia... [more]
RL20_BUCCC5.206e-2450.9850S ribosomal protein L20 OS=Buchnera aphidicola s... [more]
RL20_AQUAE5.206e-2444.7450S ribosomal protein L20 OS=Aquifex aeolicus GN=r... [more]

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Properties
Property NameValue
Genbank descriptionC06012E06SK RindPdig24 Citrus clementina cDNA clone C06012E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298468 ID=CX298468; Name=CX298468; organism=Citrus clementina; type=EST; length=714bp
TTTTTTTTTGATATAACCACATCGCTATTCTTAGATAAGAAAAAGCTCAA
CCTTAACATGCAAGACATGAAGACAATCAGGAAACTTGCAATATCTGATT
TCAAACATTATCAACCACAAAGGTACTTATCAGTGTTGACCCTCAATTCT
TTACAAAACACATAAGCAGTCTAACTGTGTTCGCCATGACGCATCCCTTG
CATTCCAGTAATATTAAAATACTAAAGAATGCAATATTCGGGTCACTAAT
TACTAACTACGCATTGATTGAAATGTCAGCCTTTCTGGGAGGATGCACAA
TATTTTTGTTTCCAGGGAAGGCATTGCGAGAGATGTCTACAAGGGCCTTG
AAACTATATGGTTCATGCATCGACAGCTCTGACAGAACTTTCCTGTTCAG
TTGGATGTTCTCCTTCATCAGTCCATGCATAAAGTTACCATAGTTAACGC
CGTGTTGGCGAGTGCCGGCGTTGATGCGTTGAATCCAAAGGGAGCGCATG
TCACGCTTCTTGTTGCGGCGGTCTCTGTAGGAATACTGCAATGCTTTCTC
CACTCTCTCTCTTGCTATTCTTATGCAATTTTTCGCTCTTCCTCTGAACC
CCTTTGCCAGCTTAAATATCTCCTTCTTGTTCATCCTTTCTCTCTTTTCT
TTAATCCTTAAACAATGATGAATTCGTTCCTTCGATTCTCACTCTTCTCT
TCTCCTCTCTTCTC
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