CX298468
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_NEIG1 (50S ribosomal protein L20 OS=Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090) GN=rplT PE=3 SV=1) HSP 1 Score: 112.079 bits (279), Expect = 3.052e-24 Identity = 52/106 (49.06%), Postives = 79/106 (74.53%), Query Frame = -3 Query: 320 RMNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNA 637 R ++IF LAKG+RGR KN R+A++ V KA QY+YRDRR +KR R LWI RINAG R++G++Y FM+GL + +I+++RKVL++L++ + +F LV+ ++ A Sbjct: 11 RARHQKIFALAKGYRGRRKNVYRVAKQAVMKAGQYAYRDRRQRKRQFRQLWIVRINAGARENGLSYSKFMNGLKRASIEIDRKVLADLAVFDKAAFAQLVEKAKAA 116
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_ZYMMO (50S ribosomal protein L20 OS=Zymomonas mobilis GN=rplT PE=3 SV=1) HSP 1 Score: 111.694 bits (278), Expect = 3.986e-24 Identity = 56/108 (51.85%), Postives = 74/108 (68.52%), Query Frame = -3 Query: 314 RMNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNAFP 637 R I AKG+ GR KN IRIAR+ VEKA QY+YRDR+ KKR R+LWIQRINA R G+ YG FM+GL + L+RKVL++L+M+E +F A++ ++A P Sbjct: 11 RAKHNRILDQAKGYYGRRKNTIRIARQAVEKAGQYAYRDRKVKKRSFRALWIQRINAAVRAEGLTYGVFMYGLKLAGLDLDRKVLADLAMNESAAFGAIIAQVKSALP 118
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_ROSS1 (50S ribosomal protein L20 OS=Roseiflexus sp. (strain RS-1) GN=rplT PE=3 SV=1) HSP 1 Score: 111.694 bits (278), Expect = 3.986e-24 Identity = 50/106 (47.17%), Postives = 75/106 (70.75%), Query Frame = -3 Query: 320 RMNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNA 637 R K++ + AKG+RG +++ARE V KAL Y+YRDRRN+KRD R LWI RINA R HG++Y FM+GL + I L+RK+L+++++ +P +F +V+ +R A Sbjct: 11 RKRHKKLLEQAKGYRGSRSRRVKVARETVMKALWYAYRDRRNRKRDFRRLWIVRINAAARMHGMSYSRFMNGLKRAGIDLDRKILADMAVRDPAAFSRVVEQARQA 116
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_RHOP2 (50S ribosomal protein L20 OS=Rhodopseudomonas palustris (strain HaA2) GN=rplT PE=3 SV=1) HSP 1 Score: 111.694 bits (278), Expect = 3.986e-24 Identity = 53/102 (51.96%), Postives = 76/102 (74.51%), Query Frame = -3 Query: 320 KEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNA 625 K+++K AKGFRGR KN IR A+ V+KA QY++RDR+ KKR R+LWIQRINA R G+ Y F++GL K I ++RKVLS+L++ EP +F+A+ + ++ A Sbjct: 15 KKVYKAAKGFRGRRKNTIRAAKAAVDKAGQYAFRDRKRKKRTFRALWIQRINAAVRPFGMTYSVFINGLSKSGIVVDRKVLSDLAITEPAAFQAIAEKAKAA 116
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_NOVAD (50S ribosomal protein L20 OS=Novosphingobium aromaticivorans (strain DSM 12444) GN=rplT PE=3 SV=1) HSP 1 Score: 111.694 bits (278), Expect = 3.986e-24 Identity = 54/108 (50.00%), Postives = 73/108 (67.59%), Query Frame = -3 Query: 314 RMNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNAFP 637 R K I AKG+RGR KN IR+AR+ VEKA QY+YRDR+ KKR R+LWIQRINA R G+ Y F+HG I+L+RK +++L+M+E F A++ ++ A P Sbjct: 11 RAKHKRILDQAKGYRGRRKNTIRVARQAVEKAGQYAYRDRKVKKRSFRALWIQRINAAVRAEGLTYSQFIHGAKLAGIELDRKAMADLAMNEGAIFNAVIAQAKAALP 118
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_LEPCP (50S ribosomal protein L20 OS=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) GN=rplT PE=3 SV=1) HSP 1 Score: 111.694 bits (278), Expect = 3.986e-24 Identity = 54/101 (53.47%), Postives = 72/101 (71.29%), Query Frame = -3 Query: 335 RMNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVD 637 R K++ LAKGFRGR KN RIA++ V KA QY+YRDRR KKR R LWI RINA +R G+ Y F+ GL K I ++RKVLS++++H+P +F ++VD Sbjct: 11 RARHKKVLALAKGFRGRRKNVYRIAKQAVMKAGQYAYRDRRAKKRVFRRLWIARINAASRSLGLTYSKFIAGLKKAQIDIDRKVLSDMAIHDPAAFGSIVD 111
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_OLICO (50S ribosomal protein L20 OS=Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5) GN=rplT PE=3 SV=1) HSP 1 Score: 111.309 bits (277), Expect = 5.206e-24 Identity = 51/102 (50.00%), Postives = 76/102 (74.51%), Query Frame = -3 Query: 320 KEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNA 625 K+++K A+GFRGR KN IR A+ V+KA QY+Y R+ KKR+ R+LWIQRINA R G+ Y F++GL K + ++RKVLS+L++HEP +F+A+ + ++ A Sbjct: 15 KKVYKAAEGFRGRRKNTIRAAKAAVDKAQQYAYVGRKLKKRNFRALWIQRINAAVRPFGLTYSRFINGLAKSGVVIDRKVLSDLAIHEPAAFQAIAEKAKAA 116
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_GLUDA (50S ribosomal protein L20 OS=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) GN=rplT PE=3 SV=1) HSP 1 Score: 111.309 bits (277), Expect = 5.206e-24 Identity = 51/96 (53.12%), Postives = 72/96 (75.00%), Query Frame = -3 Query: 338 KEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALV 625 K++ + +KGFRGR+ RIA ER+EKAL+Y+YRDRRNKKRD R+LWIQRINA R+HG+ Y F+ GL K I+++RKVL+ ++ + +F +V Sbjct: 15 KKVLEQSKGFRGRSSTNYRIALERLEKALRYAYRDRRNKKRDFRALWIQRINAAVREHGLTYSKFIFGLDKAGIEIDRKVLAAIAFDDAATFAEIV 110
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_BUCCC (50S ribosomal protein L20 OS=Buchnera aphidicola subsp. Cinara cedri GN=rplT PE=3 SV=1) HSP 1 Score: 111.309 bits (277), Expect = 5.206e-24 Identity = 52/102 (50.98%), Postives = 72/102 (70.59%), Query Frame = -3 Query: 320 KEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNA 625 K++ KLAKG+ G R+A + V K+ QYSYRDRRNKKRD R LWI RINA + + ++Y F++GL +I +NRK+LSE+++ + SFK LVD S+NA Sbjct: 15 KKVIKLAKGYYGARSRVYRVANQAVIKSGQYSYRDRRNKKRDFRKLWIIRINAAVKNYNLSYSKFIYGLKLSSININRKILSEIAIFDKISFKKLVDYSKNA 116
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_AQUAE (50S ribosomal protein L20 OS=Aquifex aeolicus GN=rplT PE=1 SV=1) HSP 1 Score: 111.309 bits (277), Expect = 5.206e-24 Identity = 51/114 (44.74%), Postives = 79/114 (69.30%), Query Frame = -3 Query: 320 LRIKEKRERMNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNA 661 +R+K R KK+I KLAKG+RG+ R A+E V +AL Y YRDR+ +KR+ R LWI RINA R +G+NY F++GL K I+L+RK+L+++++ +P +F+ +V+ + A Sbjct: 1 MRVKGPSSRRKKKKILKLAKGYRGQRSRSYRRAKEAVMRALYYQYRDRKLRKREFRRLWIARINAAVRAYGLNYSTFINGLKKAGIELDRKILADMAVRDPQAFEQVVNKVKEA 114 The following BLAST results are available for this feature:
BLAST of CX298468 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX298468 ID=CX298468; Name=CX298468; organism=Citrus clementina; type=EST; length=714bpback to top |