CX298468

Overview
NameCX298468
Unique NameCX298468
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length714
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_BURA4 (50S ribosomal protein L20 OS=Burkholderia ambifaria (strain MC40-6) GN=rplT PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 8.880e-24
Identity = 53/100 (53.00%), Postives = 74/100 (74.00%), Query Frame = -3
Query:  338 RMNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALV 637
            R   K+I KLAKG+RGR  N  RIA++ V +A QY+YRDRRNKKR  R+LWI RINA  RQH + Y  F++GL K +I+L+RKVL+++++ +  +F A+V
Sbjct:   11 RARHKKIIKLAKGYRGRRNNVYRIAKQAVMRAGQYAYRDRRNKKRVFRALWITRINAAVRQHDMTYSVFINGLKKASIELDRKVLADMAVFDKAAFAAIV 110          
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_BART1 (50S ribosomal protein L20 OS=Bartonella tribocorum (strain CIP 105476 / IBS 506) GN=rplT PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 8.880e-24
Identity = 51/102 (50.00%), Postives = 75/102 (73.53%), Query Frame = -3
Query:  320 KEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNA 625
            K++ K A+GF GR KN IR A+  V+++ QY+YRDR+N+KR  R+LWIQRINA  R  G+ YG F+ GL K  I+++RKVLS+++++E  +F ALV  ++ A
Sbjct:   15 KKVLKQAEGFYGRRKNTIRAAKAAVDRSKQYAYRDRKNRKRTFRALWIQRINAAVRAEGLTYGRFIDGLSKAGIEVDRKVLSDIAIYEAEAFSALVASAKKA 116          
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_ANAPZ (50S ribosomal protein L20 OS=Anaplasma phagocytophilum (strain HZ) GN=rplT PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 8.880e-24
Identity = 52/106 (49.06%), Postives = 74/106 (69.81%), Query Frame = -3
Query:  320 RMNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNA 637
            R   K++  LAKG+RGR+KNC R A +R+EKAL Y+YRDRR +KRD RSLWI RINA    +G+ Y  FMHG+   +I LNRK+L+E+++ +  +F+ +   +  A
Sbjct:   11 RARHKKVIALAKGYRGRSKNCYRAALQRLEKALAYAYRDRRARKRDFRSLWIVRINAAAGLYGLRYSEFMHGVSLCSIGLNRKMLAEMAVRDKGAFEKIAHAAAQA 116          
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_POLSJ (50S ribosomal protein L20 OS=Polaromonas sp. (strain JS666 / ATCC BAA-500) GN=rplT PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.160e-23
Identity = 53/101 (52.48%), Postives = 71/101 (70.30%), Query Frame = -3
Query:  335 RMNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVD 637
            R   K++  LAKGFRGR  N  RIA+E V KA QY+YRDRR KKR  R LWI RINA +R  G+ Y  F +GL K  I+++RKVLS++++H+  +F A+V+
Sbjct:   11 RARHKKVLALAKGFRGRRGNVFRIAKEAVMKAGQYAYRDRRTKKRVFRQLWIARINAASRSFGMTYSQFANGLKKAGIEIDRKVLSDMAIHDSAAFGAIVE 111          
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_ACICJ (50S ribosomal protein L20 OS=Acidiphilium cryptum (strain JF-5) GN=rplT PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.160e-23
Identity = 51/100 (51.00%), Postives = 73/100 (73.00%), Query Frame = -3
Query:  326 KEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISR 625
            K++ K +KGF GR+    RIA ER+EKAL+Y+YRDRRNKKR+ R+LWIQRINA  R+ G+ Y  F+  L   NI+L+RKVL+ ++  +P  F A+V+ ++
Sbjct:   15 KKVLKQSKGFVGRSSTNYRIALERLEKALRYAYRDRRNKKREFRALWIQRINAAVREQGMTYSQFIAALKAANIELDRKVLAAMAFDDPAGFTAIVEAAK 114          
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_ACHLI (50S ribosomal protein L20 OS=Acholeplasma laidlawii (strain PG-8A) GN=rplT PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.160e-23
Identity = 52/106 (49.06%), Postives = 73/106 (68.87%), Query Frame = -3
Query:  320 RMNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNA 637
            R  +K+I KLAKG+ G      R A E+V +ALQY+YRDR+  KR+ R LWI RINAG  Q+G  Y   +HGL   N+QLNRKVL++L++ EP  F + V+++++A
Sbjct:   11 RRRRKKILKLAKGYFGSKSTLYRTAHEQVMRALQYAYRDRKQNKRNFRRLWISRINAGAVQNGFKYSKLIHGLSLANVQLNRKVLADLAISEPTVFASYVELAKDA 116          
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_SYNP2 (50S ribosomal protein L20 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=rplT PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.515e-23
Identity = 51/106 (48.11%), Postives = 75/106 (70.75%), Query Frame = -3
Query:  320 RMNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNA 637
            R  +K+I KLAKGFRG      R A ++V KAL+ +YRDRR KKRD R LWI R+NA  R +G++Y    H L K NI++NRK+L+EL++ +P +F  +V+++++A
Sbjct:   11 RKRRKKILKLAKGFRGSHSKLFRTANQQVMKALRNAYRDRRKKKRDFRRLWIVRVNAAARLNGLSYSKLTHQLKKANIEINRKMLAELAVVDPQAFAQVVEVAKSA 116          
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_DESAA (50S ribosomal protein L20 OS=Desulfatibacillum alkenivorans (strain AK-01) GN=rplT PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.515e-23
Identity = 51/112 (45.54%), Postives = 78/112 (69.64%), Query Frame = -3
Query:  329 LRIKEK-RERMNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDIS 661
            +R+K   + R  +K++ KLAKGFRG      R A + V++AL Y+YRDRR KKRD R+LWI RINAG R +G++Y  F++GL + ++ L+RKVL+EL++ +P  F  +  ++
Sbjct:    1 MRVKRGFKARRRRKKVLKLAKGFRGGHSKLYRTAADTVDRALMYAYRDRRQKKRDFRALWIARINAGARMNGLSYSKFIYGLKQADVALDRKVLAELAISDPACFAEITSLA 112          
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_ACIF5 (50S ribosomal protein L20 OS=Acidithiobacillus ferrooxidans (strain ATCC 53993) GN=rplT PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.515e-23
Identity = 52/98 (53.06%), Postives = 70/98 (71.43%), Query Frame = -3
Query:  332 KEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDI 625
            K++   AKGFRG+ K+  RIA + V KAL Y YRDRR KKRD RSLWI RINA  R  GV Y  FM+GL++  IQL+RKVL+++++ +  +F  LV++
Sbjct:   15 KKVLARAKGFRGQRKSNYRIAHQAVMKALTYEYRDRRTKKRDFRSLWIVRINAAARSEGVTYSRFMNGLLRAGIQLDRKVLADIAVRDKAAFSRLVEV 112          
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_ACIF2 (50S ribosomal protein L20 OS=Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / NCIB 8455) GN=rplT PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.515e-23
Identity = 52/98 (53.06%), Postives = 70/98 (71.43%), Query Frame = -3
Query:  332 KEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDI 625
            K++   AKGFRG+ K+  RIA + V KAL Y YRDRR KKRD RSLWI RINA  R  GV Y  FM+GL++  IQL+RKVL+++++ +  +F  LV++
Sbjct:   15 KKVLARAKGFRGQRKSNYRIAHQAVMKALTYEYRDRRTKKRDFRSLWIVRINAAARSEGVTYSRFMNGLLRAGIQLDRKVLADIAVRDKAAFSRLVEV 112          
The following BLAST results are available for this feature:
BLAST of CX298468 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL20_BURA48.880e-2453.0050S ribosomal protein L20 OS=Burkholderia ambifari... [more]
RL20_BART18.880e-2450.0050S ribosomal protein L20 OS=Bartonella tribocorum... [more]
RL20_ANAPZ8.880e-2449.0650S ribosomal protein L20 OS=Anaplasma phagocytoph... [more]
RL20_POLSJ1.160e-2352.4850S ribosomal protein L20 OS=Polaromonas sp. (stra... [more]
RL20_ACICJ1.160e-2351.0050S ribosomal protein L20 OS=Acidiphilium cryptum ... [more]
RL20_ACHLI1.160e-2349.0650S ribosomal protein L20 OS=Acholeplasma laidlawi... [more]
RL20_SYNP21.515e-2348.1150S ribosomal protein L20 OS=Synechococcus sp. (st... [more]
RL20_DESAA1.515e-2345.5450S ribosomal protein L20 OS=Desulfatibacillum alk... [more]
RL20_ACIF51.515e-2353.0650S ribosomal protein L20 OS=Acidithiobacillus fer... [more]
RL20_ACIF21.515e-2353.0650S ribosomal protein L20 OS=Acidithiobacillus fer... [more]

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Properties
Property NameValue
Genbank descriptionC06012E06SK RindPdig24 Citrus clementina cDNA clone C06012E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298468 ID=CX298468; Name=CX298468; organism=Citrus clementina; type=EST; length=714bp
TTTTTTTTTGATATAACCACATCGCTATTCTTAGATAAGAAAAAGCTCAA
CCTTAACATGCAAGACATGAAGACAATCAGGAAACTTGCAATATCTGATT
TCAAACATTATCAACCACAAAGGTACTTATCAGTGTTGACCCTCAATTCT
TTACAAAACACATAAGCAGTCTAACTGTGTTCGCCATGACGCATCCCTTG
CATTCCAGTAATATTAAAATACTAAAGAATGCAATATTCGGGTCACTAAT
TACTAACTACGCATTGATTGAAATGTCAGCCTTTCTGGGAGGATGCACAA
TATTTTTGTTTCCAGGGAAGGCATTGCGAGAGATGTCTACAAGGGCCTTG
AAACTATATGGTTCATGCATCGACAGCTCTGACAGAACTTTCCTGTTCAG
TTGGATGTTCTCCTTCATCAGTCCATGCATAAAGTTACCATAGTTAACGC
CGTGTTGGCGAGTGCCGGCGTTGATGCGTTGAATCCAAAGGGAGCGCATG
TCACGCTTCTTGTTGCGGCGGTCTCTGTAGGAATACTGCAATGCTTTCTC
CACTCTCTCTCTTGCTATTCTTATGCAATTTTTCGCTCTTCCTCTGAACC
CCTTTGCCAGCTTAAATATCTCCTTCTTGTTCATCCTTTCTCTCTTTTCT
TTAATCCTTAAACAATGATGAATTCGTTCCTTCGATTCTCACTCTTCTCT
TCTCCTCTCTTCTC
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