CX298468
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_BURA4 (50S ribosomal protein L20 OS=Burkholderia ambifaria (strain MC40-6) GN=rplT PE=3 SV=1) HSP 1 Score: 110.538 bits (275), Expect = 8.880e-24 Identity = 53/100 (53.00%), Postives = 74/100 (74.00%), Query Frame = -3 Query: 338 RMNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALV 637 R K+I KLAKG+RGR N RIA++ V +A QY+YRDRRNKKR R+LWI RINA RQH + Y F++GL K +I+L+RKVL+++++ + +F A+V Sbjct: 11 RARHKKIIKLAKGYRGRRNNVYRIAKQAVMRAGQYAYRDRRNKKRVFRALWITRINAAVRQHDMTYSVFINGLKKASIELDRKVLADMAVFDKAAFAAIV 110
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_BART1 (50S ribosomal protein L20 OS=Bartonella tribocorum (strain CIP 105476 / IBS 506) GN=rplT PE=3 SV=1) HSP 1 Score: 110.538 bits (275), Expect = 8.880e-24 Identity = 51/102 (50.00%), Postives = 75/102 (73.53%), Query Frame = -3 Query: 320 KEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNA 625 K++ K A+GF GR KN IR A+ V+++ QY+YRDR+N+KR R+LWIQRINA R G+ YG F+ GL K I+++RKVLS+++++E +F ALV ++ A Sbjct: 15 KKVLKQAEGFYGRRKNTIRAAKAAVDRSKQYAYRDRKNRKRTFRALWIQRINAAVRAEGLTYGRFIDGLSKAGIEVDRKVLSDIAIYEAEAFSALVASAKKA 116
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_ANAPZ (50S ribosomal protein L20 OS=Anaplasma phagocytophilum (strain HZ) GN=rplT PE=3 SV=1) HSP 1 Score: 110.538 bits (275), Expect = 8.880e-24 Identity = 52/106 (49.06%), Postives = 74/106 (69.81%), Query Frame = -3 Query: 320 RMNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNA 637 R K++ LAKG+RGR+KNC R A +R+EKAL Y+YRDRR +KRD RSLWI RINA +G+ Y FMHG+ +I LNRK+L+E+++ + +F+ + + A Sbjct: 11 RARHKKVIALAKGYRGRSKNCYRAALQRLEKALAYAYRDRRARKRDFRSLWIVRINAAAGLYGLRYSEFMHGVSLCSIGLNRKMLAEMAVRDKGAFEKIAHAAAQA 116
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_POLSJ (50S ribosomal protein L20 OS=Polaromonas sp. (strain JS666 / ATCC BAA-500) GN=rplT PE=3 SV=1) HSP 1 Score: 110.153 bits (274), Expect = 1.160e-23 Identity = 53/101 (52.48%), Postives = 71/101 (70.30%), Query Frame = -3 Query: 335 RMNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVD 637 R K++ LAKGFRGR N RIA+E V KA QY+YRDRR KKR R LWI RINA +R G+ Y F +GL K I+++RKVLS++++H+ +F A+V+ Sbjct: 11 RARHKKVLALAKGFRGRRGNVFRIAKEAVMKAGQYAYRDRRTKKRVFRQLWIARINAASRSFGMTYSQFANGLKKAGIEIDRKVLSDMAIHDSAAFGAIVE 111
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_ACICJ (50S ribosomal protein L20 OS=Acidiphilium cryptum (strain JF-5) GN=rplT PE=3 SV=1) HSP 1 Score: 110.153 bits (274), Expect = 1.160e-23 Identity = 51/100 (51.00%), Postives = 73/100 (73.00%), Query Frame = -3 Query: 326 KEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISR 625 K++ K +KGF GR+ RIA ER+EKAL+Y+YRDRRNKKR+ R+LWIQRINA R+ G+ Y F+ L NI+L+RKVL+ ++ +P F A+V+ ++ Sbjct: 15 KKVLKQSKGFVGRSSTNYRIALERLEKALRYAYRDRRNKKREFRALWIQRINAAVREQGMTYSQFIAALKAANIELDRKVLAAMAFDDPAGFTAIVEAAK 114
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_ACHLI (50S ribosomal protein L20 OS=Acholeplasma laidlawii (strain PG-8A) GN=rplT PE=3 SV=1) HSP 1 Score: 110.153 bits (274), Expect = 1.160e-23 Identity = 52/106 (49.06%), Postives = 73/106 (68.87%), Query Frame = -3 Query: 320 RMNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNA 637 R +K+I KLAKG+ G R A E+V +ALQY+YRDR+ KR+ R LWI RINAG Q+G Y +HGL N+QLNRKVL++L++ EP F + V+++++A Sbjct: 11 RRRRKKILKLAKGYFGSKSTLYRTAHEQVMRALQYAYRDRKQNKRNFRRLWISRINAGAVQNGFKYSKLIHGLSLANVQLNRKVLADLAISEPTVFASYVELAKDA 116
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_SYNP2 (50S ribosomal protein L20 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=rplT PE=3 SV=1) HSP 1 Score: 109.768 bits (273), Expect = 1.515e-23 Identity = 51/106 (48.11%), Postives = 75/106 (70.75%), Query Frame = -3 Query: 320 RMNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNA 637 R +K+I KLAKGFRG R A ++V KAL+ +YRDRR KKRD R LWI R+NA R +G++Y H L K NI++NRK+L+EL++ +P +F +V+++++A Sbjct: 11 RKRRKKILKLAKGFRGSHSKLFRTANQQVMKALRNAYRDRRKKKRDFRRLWIVRVNAAARLNGLSYSKLTHQLKKANIEINRKMLAELAVVDPQAFAQVVEVAKSA 116
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_DESAA (50S ribosomal protein L20 OS=Desulfatibacillum alkenivorans (strain AK-01) GN=rplT PE=3 SV=1) HSP 1 Score: 109.768 bits (273), Expect = 1.515e-23 Identity = 51/112 (45.54%), Postives = 78/112 (69.64%), Query Frame = -3 Query: 329 LRIKEK-RERMNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDIS 661 +R+K + R +K++ KLAKGFRG R A + V++AL Y+YRDRR KKRD R+LWI RINAG R +G++Y F++GL + ++ L+RKVL+EL++ +P F + ++ Sbjct: 1 MRVKRGFKARRRRKKVLKLAKGFRGGHSKLYRTAADTVDRALMYAYRDRRQKKRDFRALWIARINAGARMNGLSYSKFIYGLKQADVALDRKVLAELAISDPACFAEITSLA 112
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_ACIF5 (50S ribosomal protein L20 OS=Acidithiobacillus ferrooxidans (strain ATCC 53993) GN=rplT PE=3 SV=1) HSP 1 Score: 109.768 bits (273), Expect = 1.515e-23 Identity = 52/98 (53.06%), Postives = 70/98 (71.43%), Query Frame = -3 Query: 332 KEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDI 625 K++ AKGFRG+ K+ RIA + V KAL Y YRDRR KKRD RSLWI RINA R GV Y FM+GL++ IQL+RKVL+++++ + +F LV++ Sbjct: 15 KKVLARAKGFRGQRKSNYRIAHQAVMKALTYEYRDRRTKKRDFRSLWIVRINAAARSEGVTYSRFMNGLLRAGIQLDRKVLADIAVRDKAAFSRLVEV 112
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_ACIF2 (50S ribosomal protein L20 OS=Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / NCIB 8455) GN=rplT PE=3 SV=1) HSP 1 Score: 109.768 bits (273), Expect = 1.515e-23 Identity = 52/98 (53.06%), Postives = 70/98 (71.43%), Query Frame = -3 Query: 332 KEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDI 625 K++ AKGFRG+ K+ RIA + V KAL Y YRDRR KKRD RSLWI RINA R GV Y FM+GL++ IQL+RKVL+++++ + +F LV++ Sbjct: 15 KKVLARAKGFRGQRKSNYRIAHQAVMKALTYEYRDRRTKKRDFRSLWIVRINAAARSEGVTYSRFMNGLLRAGIQLDRKVLADIAVRDKAAFSRLVEV 112 The following BLAST results are available for this feature:
BLAST of CX298468 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX298468 ID=CX298468; Name=CX298468; organism=Citrus clementina; type=EST; length=714bpback to top |