CX298468
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_METSB (50S ribosomal protein L20 OS=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) GN=rplT PE=3 SV=1) HSP 1 Score: 109.383 bits (272), Expect = 1.978e-23 Identity = 51/104 (49.04%), Postives = 76/104 (73.08%), Query Frame = -3 Query: 314 KEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNAFP 625 K+ + AKGF GR KN IR A+ V++++QY+ RDRR KKR R+LWIQR+NA R+ G+ Y F+ GL K + ++RKVLS+L++ +P +FKA+VD +++A P Sbjct: 15 KKTLEAAKGFYGRRKNTIRAAKAAVDRSMQYATRDRRAKKRVFRALWIQRLNAAVRECGLTYSRFIDGLAKAGVAVDRKVLSDLAITQPEAFKAIVDKAKSALP 118
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_ELUMP (50S ribosomal protein L20 OS=Elusimicrobium minutum (strain Pei191) GN=rplT PE=3 SV=1) HSP 1 Score: 109.383 bits (272), Expect = 1.978e-23 Identity = 53/115 (46.09%), Postives = 79/115 (68.70%), Query Frame = -3 Query: 320 LRIKEKRER-MNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNA 661 +RIK R KK++ K A G+ G +R+A ++V+K+L ++Y R++KK R LWI RINA R+ G+NY NF++GL K NI LNRK+LSE+++ +P SFK LVD+++ A Sbjct: 1 MRIKFSVARHARKKKVLKRASGYYGDKSRRLRMATQQVDKSLVHAYTGRKDKKHQYRQLWITRINAAVREEGLNYSNFINGLAKSNITLNRKMLSEMAIQDPLSFKKLVDVAKQA 115
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_ANADF (50S ribosomal protein L20 OS=Anaeromyxobacter sp. (strain Fw109-5) GN=rplT PE=3 SV=1) HSP 1 Score: 109.383 bits (272), Expect = 1.978e-23 Identity = 52/113 (46.02%), Postives = 76/113 (67.26%), Query Frame = -3 Query: 326 LRIKEK-RERMNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISR 661 +R+K+ + R + + KLAKGFRGR KNC R A + VE+AL Y+ RDRR K+RD R+LWI RINA RQ+G Y + GL K + ++RK+L++L++ P F A+V ++ Sbjct: 1 MRVKKGYKARRRRNRVLKLAKGFRGRRKNCYRRANQAVERALDYATRDRRQKRRDFRALWIVRINAAARQNGTTYSRLLAGLKKAGVAIDRKILADLALALPGDFAAVVKAAK 113
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_THIDA (50S ribosomal protein L20 OS=Thiobacillus denitrificans (strain ATCC 25259) GN=rplT PE=3 SV=1) HSP 1 Score: 108.612 bits (270), Expect = 3.375e-23 Identity = 52/101 (51.49%), Postives = 70/101 (69.31%), Query Frame = -3 Query: 335 RMNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVD 637 R + K+I AKG+RGR KN R+A E V KA QY YRDRR +KR R+LWI RINA RQHG+ Y FM+GL + I ++RKVLS++++ + +F +VD Sbjct: 11 RASHKKILDAAKGYRGRRKNVFRVANEAVMKAGQYQYRDRRQRKRQFRALWIARINAAARQHGLTYSVFMNGLSRAEIGVDRKVLSDIAIFDKDAFAKIVD 111
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_GEOSW (50S ribosomal protein L20 OS=Geobacillus sp. (strain WCH70) GN=rplT PE=3 SV=1) HSP 1 Score: 108.612 bits (270), Expect = 3.375e-23 Identity = 47/104 (45.19%), Postives = 73/104 (70.19%), Query Frame = -3 Query: 326 RMNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISR 637 R +K++ KLAKG+ G R+A ++V K+L Y+YRDRR +KRD R LWI RINA R HG++Y FMHGL +++NRK+L++L++++ +F L D+++ Sbjct: 11 RRRRKKVLKLAKGYFGAKHALYRVANQQVMKSLMYAYRDRRQRKRDFRKLWIARINAAARMHGLSYSRFMHGLKLAGVEVNRKMLADLAVNDQAAFAQLADLAK 114
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_DINSH (50S ribosomal protein L20 OS=Dinoroseobacter shibae (strain DFL 12) GN=rplT PE=3 SV=1) HSP 1 Score: 108.612 bits (270), Expect = 3.375e-23 Identity = 51/106 (48.11%), Postives = 76/106 (71.70%), Query Frame = -3 Query: 314 KEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQH--GVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNAFP 625 K++ AKG+ GR KN ++AR+ V+KA QY+ RDR+N+KR R+LWIQRINA R H + Y F++GL I+++RKVL++L++HEP +F A+VD ++ A P Sbjct: 15 KKVTDAAKGYYGRRKNTFKVARQAVDKANQYATRDRKNRKRQFRALWIQRINAAVRAHDEALTYSRFINGLSLAGIEVDRKVLADLAVHEPEAFSAIVDQAKAALP 120
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_CYAP7 (50S ribosomal protein L20 OS=Cyanothece sp. (strain PCC 7424) GN=rplT PE=3 SV=1) HSP 1 Score: 108.612 bits (270), Expect = 3.375e-23 Identity = 52/106 (49.06%), Postives = 73/106 (68.87%), Query Frame = -3 Query: 320 RMNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNA 637 R +K+I KLAKGFRG R A ++V KAL+ +YRDRR KKRD R LWI RINA RQ+G++Y + K NIQLNRK+L++L++ +P +F +V+++ A Sbjct: 11 RKRRKKILKLAKGFRGSHSKLFRTANQQVMKALRNAYRDRRKKKRDFRRLWITRINASARQNGISYSKLTGQMKKANIQLNRKMLAQLAVLDPQAFAKVVEVASQA 116
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_CAUSK (50S ribosomal protein L20 OS=Caulobacter sp. (strain K31) GN=rplT PE=3 SV=1) HSP 1 Score: 108.612 bits (270), Expect = 3.375e-23 Identity = 54/102 (52.94%), Postives = 71/102 (69.61%), Query Frame = -3 Query: 320 KEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNA 625 K++ + AKGF GR KN IR A+ V+KA QY+YRDR+ +KR RSLWIQRINAG R G Y F+HGL I ++RKVLS+++ +P +FKA+ D R A Sbjct: 15 KKVLEQAKGFYGRRKNTIRTAKAAVDKAGQYAYRDRKVRKRAFRSLWIQRINAGARVEGFTYSQFIHGLDVAGIVIDRKVLSDIAGQDPVAFKAIADKVRAA 116
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_BURVG (50S ribosomal protein L20 OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=rplT PE=3 SV=1) HSP 1 Score: 108.612 bits (270), Expect = 3.375e-23 Identity = 52/100 (52.00%), Postives = 73/100 (73.00%), Query Frame = -3 Query: 338 RMNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALV 637 R K+I LAKG+RGR N RIA++ V +A QY+YRDRRNKKR R+LWI RINA RQH + Y F++GL K +I+L+RKVL+++++ + +F A+V Sbjct: 11 RARHKKIINLAKGYRGRRNNVYRIAKQAVMRAGQYAYRDRRNKKRVFRALWITRINAAVRQHDMTYSVFINGLKKASIELDRKVLADMAVFDKAAFAAIV 110
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_BURTA (50S ribosomal protein L20 OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=rplT PE=3 SV=1) HSP 1 Score: 108.612 bits (270), Expect = 3.375e-23 Identity = 52/100 (52.00%), Postives = 73/100 (73.00%), Query Frame = -3 Query: 338 RMNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALV 637 R K+I LAKG+RGR N RIA++ V +A QY+YRDRRNKKR R+LWI RINA RQH + Y F++GL K +I+L+RKVL+++++ + +F A+V Sbjct: 11 RARHKKIINLAKGYRGRRNNVYRIAKQAVMRAGQYAYRDRRNKKRVFRALWITRINAAVRQHDMTYSVFINGLKKASIELDRKVLADMAVFDKAAFAAIV 110 The following BLAST results are available for this feature:
BLAST of CX298468 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX298468 ID=CX298468; Name=CX298468; organism=Citrus clementina; type=EST; length=714bpback to top |