CX298468

Overview
NameCX298468
Unique NameCX298468
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length714
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_METSB (50S ribosomal protein L20 OS=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) GN=rplT PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.978e-23
Identity = 51/104 (49.04%), Postives = 76/104 (73.08%), Query Frame = -3
Query:  314 KEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNAFP 625
            K+  + AKGF GR KN IR A+  V++++QY+ RDRR KKR  R+LWIQR+NA  R+ G+ Y  F+ GL K  + ++RKVLS+L++ +P +FKA+VD +++A P
Sbjct:   15 KKTLEAAKGFYGRRKNTIRAAKAAVDRSMQYATRDRRAKKRVFRALWIQRLNAAVRECGLTYSRFIDGLAKAGVAVDRKVLSDLAITQPEAFKAIVDKAKSALP 118          
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_ELUMP (50S ribosomal protein L20 OS=Elusimicrobium minutum (strain Pei191) GN=rplT PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.978e-23
Identity = 53/115 (46.09%), Postives = 79/115 (68.70%), Query Frame = -3
Query:  320 LRIKEKRER-MNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNA 661
            +RIK    R   KK++ K A G+ G     +R+A ++V+K+L ++Y  R++KK   R LWI RINA  R+ G+NY NF++GL K NI LNRK+LSE+++ +P SFK LVD+++ A
Sbjct:    1 MRIKFSVARHARKKKVLKRASGYYGDKSRRLRMATQQVDKSLVHAYTGRKDKKHQYRQLWITRINAAVREEGLNYSNFINGLAKSNITLNRKMLSEMAIQDPLSFKKLVDVAKQA 115          
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_ANADF (50S ribosomal protein L20 OS=Anaeromyxobacter sp. (strain Fw109-5) GN=rplT PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.978e-23
Identity = 52/113 (46.02%), Postives = 76/113 (67.26%), Query Frame = -3
Query:  326 LRIKEK-RERMNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISR 661
            +R+K+  + R  +  + KLAKGFRGR KNC R A + VE+AL Y+ RDRR K+RD R+LWI RINA  RQ+G  Y   + GL K  + ++RK+L++L++  P  F A+V  ++
Sbjct:    1 MRVKKGYKARRRRNRVLKLAKGFRGRRKNCYRRANQAVERALDYATRDRRQKRRDFRALWIVRINAAARQNGTTYSRLLAGLKKAGVAIDRKILADLALALPGDFAAVVKAAK 113          
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_THIDA (50S ribosomal protein L20 OS=Thiobacillus denitrificans (strain ATCC 25259) GN=rplT PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.375e-23
Identity = 52/101 (51.49%), Postives = 70/101 (69.31%), Query Frame = -3
Query:  335 RMNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVD 637
            R + K+I   AKG+RGR KN  R+A E V KA QY YRDRR +KR  R+LWI RINA  RQHG+ Y  FM+GL +  I ++RKVLS++++ +  +F  +VD
Sbjct:   11 RASHKKILDAAKGYRGRRKNVFRVANEAVMKAGQYQYRDRRQRKRQFRALWIARINAAARQHGLTYSVFMNGLSRAEIGVDRKVLSDIAIFDKDAFAKIVD 111          
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_GEOSW (50S ribosomal protein L20 OS=Geobacillus sp. (strain WCH70) GN=rplT PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.375e-23
Identity = 47/104 (45.19%), Postives = 73/104 (70.19%), Query Frame = -3
Query:  326 RMNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISR 637
            R  +K++ KLAKG+ G      R+A ++V K+L Y+YRDRR +KRD R LWI RINA  R HG++Y  FMHGL    +++NRK+L++L++++  +F  L D+++
Sbjct:   11 RRRRKKVLKLAKGYFGAKHALYRVANQQVMKSLMYAYRDRRQRKRDFRKLWIARINAAARMHGLSYSRFMHGLKLAGVEVNRKMLADLAVNDQAAFAQLADLAK 114          
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_DINSH (50S ribosomal protein L20 OS=Dinoroseobacter shibae (strain DFL 12) GN=rplT PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.375e-23
Identity = 51/106 (48.11%), Postives = 76/106 (71.70%), Query Frame = -3
Query:  314 KEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQH--GVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNAFP 625
            K++   AKG+ GR KN  ++AR+ V+KA QY+ RDR+N+KR  R+LWIQRINA  R H   + Y  F++GL    I+++RKVL++L++HEP +F A+VD ++ A P
Sbjct:   15 KKVTDAAKGYYGRRKNTFKVARQAVDKANQYATRDRKNRKRQFRALWIQRINAAVRAHDEALTYSRFINGLSLAGIEVDRKVLADLAVHEPEAFSAIVDQAKAALP 120          
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_CYAP7 (50S ribosomal protein L20 OS=Cyanothece sp. (strain PCC 7424) GN=rplT PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.375e-23
Identity = 52/106 (49.06%), Postives = 73/106 (68.87%), Query Frame = -3
Query:  320 RMNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNA 637
            R  +K+I KLAKGFRG      R A ++V KAL+ +YRDRR KKRD R LWI RINA  RQ+G++Y      + K NIQLNRK+L++L++ +P +F  +V+++  A
Sbjct:   11 RKRRKKILKLAKGFRGSHSKLFRTANQQVMKALRNAYRDRRKKKRDFRRLWITRINASARQNGISYSKLTGQMKKANIQLNRKMLAQLAVLDPQAFAKVVEVASQA 116          
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_CAUSK (50S ribosomal protein L20 OS=Caulobacter sp. (strain K31) GN=rplT PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.375e-23
Identity = 54/102 (52.94%), Postives = 71/102 (69.61%), Query Frame = -3
Query:  320 KEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNA 625
            K++ + AKGF GR KN IR A+  V+KA QY+YRDR+ +KR  RSLWIQRINAG R  G  Y  F+HGL    I ++RKVLS+++  +P +FKA+ D  R A
Sbjct:   15 KKVLEQAKGFYGRRKNTIRTAKAAVDKAGQYAYRDRKVRKRAFRSLWIQRINAGARVEGFTYSQFIHGLDVAGIVIDRKVLSDIAGQDPVAFKAIADKVRAA 116          
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_BURVG (50S ribosomal protein L20 OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=rplT PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.375e-23
Identity = 52/100 (52.00%), Postives = 73/100 (73.00%), Query Frame = -3
Query:  338 RMNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALV 637
            R   K+I  LAKG+RGR  N  RIA++ V +A QY+YRDRRNKKR  R+LWI RINA  RQH + Y  F++GL K +I+L+RKVL+++++ +  +F A+V
Sbjct:   11 RARHKKIINLAKGYRGRRNNVYRIAKQAVMRAGQYAYRDRRNKKRVFRALWITRINAAVRQHDMTYSVFINGLKKASIELDRKVLADMAVFDKAAFAAIV 110          
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_BURTA (50S ribosomal protein L20 OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=rplT PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.375e-23
Identity = 52/100 (52.00%), Postives = 73/100 (73.00%), Query Frame = -3
Query:  338 RMNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALV 637
            R   K+I  LAKG+RGR  N  RIA++ V +A QY+YRDRRNKKR  R+LWI RINA  RQH + Y  F++GL K +I+L+RKVL+++++ +  +F A+V
Sbjct:   11 RARHKKIINLAKGYRGRRNNVYRIAKQAVMRAGQYAYRDRRNKKRVFRALWITRINAAVRQHDMTYSVFINGLKKASIELDRKVLADMAVFDKAAFAAIV 110          
The following BLAST results are available for this feature:
BLAST of CX298468 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL20_METSB1.978e-2349.0450S ribosomal protein L20 OS=Methylocella silvestr... [more]
RL20_ELUMP1.978e-2346.0950S ribosomal protein L20 OS=Elusimicrobium minutu... [more]
RL20_ANADF1.978e-2346.0250S ribosomal protein L20 OS=Anaeromyxobacter sp. ... [more]
RL20_THIDA3.375e-2351.4950S ribosomal protein L20 OS=Thiobacillus denitrif... [more]
RL20_GEOSW3.375e-2345.1950S ribosomal protein L20 OS=Geobacillus sp. (stra... [more]
RL20_DINSH3.375e-2348.1150S ribosomal protein L20 OS=Dinoroseobacter shiba... [more]
RL20_CYAP73.375e-2349.0650S ribosomal protein L20 OS=Cyanothece sp. (strai... [more]
RL20_CAUSK3.375e-2352.9450S ribosomal protein L20 OS=Caulobacter sp. (stra... [more]
RL20_BURVG3.375e-2352.0050S ribosomal protein L20 OS=Burkholderia vietnami... [more]
RL20_BURTA3.375e-2352.0050S ribosomal protein L20 OS=Burkholderia thailand... [more]

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Properties
Property NameValue
Genbank descriptionC06012E06SK RindPdig24 Citrus clementina cDNA clone C06012E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298468 ID=CX298468; Name=CX298468; organism=Citrus clementina; type=EST; length=714bp
TTTTTTTTTGATATAACCACATCGCTATTCTTAGATAAGAAAAAGCTCAA
CCTTAACATGCAAGACATGAAGACAATCAGGAAACTTGCAATATCTGATT
TCAAACATTATCAACCACAAAGGTACTTATCAGTGTTGACCCTCAATTCT
TTACAAAACACATAAGCAGTCTAACTGTGTTCGCCATGACGCATCCCTTG
CATTCCAGTAATATTAAAATACTAAAGAATGCAATATTCGGGTCACTAAT
TACTAACTACGCATTGATTGAAATGTCAGCCTTTCTGGGAGGATGCACAA
TATTTTTGTTTCCAGGGAAGGCATTGCGAGAGATGTCTACAAGGGCCTTG
AAACTATATGGTTCATGCATCGACAGCTCTGACAGAACTTTCCTGTTCAG
TTGGATGTTCTCCTTCATCAGTCCATGCATAAAGTTACCATAGTTAACGC
CGTGTTGGCGAGTGCCGGCGTTGATGCGTTGAATCCAAAGGGAGCGCATG
TCACGCTTCTTGTTGCGGCGGTCTCTGTAGGAATACTGCAATGCTTTCTC
CACTCTCTCTCTTGCTATTCTTATGCAATTTTTCGCTCTTCCTCTGAACC
CCTTTGCCAGCTTAAATATCTCCTTCTTGTTCATCCTTTCTCTCTTTTCT
TTAATCCTTAAACAATGATGAATTCGTTCCTTCGATTCTCACTCTTCTCT
TCTCCTCTCTTCTC
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