CX298468

Overview
NameCX298468
Unique NameCX298468
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length714
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_MAGSM (50S ribosomal protein L20 OS=Magnetococcus sp. (strain MC-1) GN=rplT PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.668e-28
Identity = 59/102 (57.84%), Postives = 79/102 (77.45%), Query Frame = -3
Query:  320 KEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNA 625
            K++ K AKG+ GR  +C RIA+++VEK LQY+YRDR+N KR+MR LWI RINA TR HG++Y  FM+GL K  I+L+RKVLSEL++ EP SF  LV+ ++ A
Sbjct:   15 KKVLKAAKGYTGRNNSCFRIAKQKVEKGLQYAYRDRKNLKREMRRLWIARINAATRLHGMSYSQFMNGLNKAGIELDRKVLSELAISEPESFGTLVEQAKAA 116          
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_METC4 (50S ribosomal protein L20 OS=Methylobacterium chloromethanicum (strain CM4 / NCIMB 13688) GN=rplT PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.484e-28
Identity = 56/104 (53.85%), Postives = 80/104 (76.92%), Query Frame = -3
Query:  314 KEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNAFP 625
            K++ K AKG+ GR KN IRIA++ VEK LQY+YRDR+NKKR  R+LWIQR+NA  R+HG+ Y  F++ L +  I+++RK LSEL++HEP +F A+V  +++A P
Sbjct:   15 KKVLKAAKGYYGRRKNTIRIAKQAVEKGLQYAYRDRKNKKRTFRALWIQRLNAAVREHGLTYSRFINALAQSGIEVDRKALSELAIHEPAAFAAVVAKAKSALP 118          
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_RICPR (50S ribosomal protein L20 OS=Rickettsia prowazekii GN=rplT PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 5.943e-28
Identity = 59/107 (55.14%), Postives = 77/107 (71.96%), Query Frame = -3
Query:  326 KRERMNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISR 646
            K  +   K+I KLAKG+RGRA NC R+A E+VEK LQY+YRDRRN+KRD R LWIQRINA  R+HG+ Y  FM  L K  I ++RKVL+EL+++    F ++V  S+
Sbjct:    8 KISKKRHKKILKLAKGYRGRANNCFRVAIEKVEKGLQYAYRDRRNRKRDFRGLWIQRINAAVREHGLIYSQFMGALKKAGINIDRKVLAELAVNNNDGFASIVQQSK 114          
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_RICM5 (50S ribosomal protein L20 OS=Rickettsia massiliae (strain Mtu5) GN=rplT PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.324e-27
Identity = 60/109 (55.05%), Postives = 80/109 (73.39%), Query Frame = -3
Query:  335 RIKEKRERMNK-KEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVD 658
            R+K  +   N+ K+I KLAKG+RGRA +C R+A E+VEKALQY+YRDRRN+KRD R LWIQRINA  R+H + Y  FM  L K  I +NRKVL+EL+++    F ++V+
Sbjct:    3 RVKSGKISKNRHKKILKLAKGYRGRANSCFRVAIEKVEKALQYAYRDRRNRKRDFRGLWIQRINAAVREHELVYSQFMGALKKAGIDINRKVLAELAVNNSDGFVSIVE 111          
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_RICFE (50S ribosomal protein L20 OS=Rickettsia felis GN=rplT PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.324e-27
Identity = 57/104 (54.81%), Postives = 77/104 (74.04%), Query Frame = -3
Query:  335 KRERMNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVD 646
            K  +   K+I KLAKG+RGRA +C R+A E+VEKALQY+YRDRRN+KRD R LWIQRINA  R+HG+ Y  FM  L K  I ++RKVL+EL+++    F ++++
Sbjct:    8 KISKNRHKKILKLAKGYRGRANSCFRVAIEKVEKALQYAYRDRRNRKRDFRGLWIQRINAAVREHGLVYSQFMGALKKAEIDIDRKVLAELAVNNSDGFASIIE 111          
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_RICCN (50S ribosomal protein L20 OS=Rickettsia conorii GN=rplT PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.324e-27
Identity = 58/104 (55.77%), Postives = 77/104 (74.04%), Query Frame = -3
Query:  335 KRERMNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVD 646
            K  +   K+I KLAKG+RGRA +C R+A E+VEKALQY+YRDRRN+KRD R LWIQRINA  R+HG+ Y  FM  L K  I ++RKVL+EL+++    F ++V+
Sbjct:    8 KISKNRHKKILKLAKGYRGRANSCFRVAIEKVEKALQYAYRDRRNRKRDFRGLWIQRINAAVREHGLVYSQFMGALKKTEIDIDRKVLAELAVNNSDGFVSIVE 111          
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_RICAE (50S ribosomal protein L20 OS=Rickettsia africae (strain ESF-5) GN=rplT PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.324e-27
Identity = 58/104 (55.77%), Postives = 77/104 (74.04%), Query Frame = -3
Query:  335 KRERMNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVD 646
            K  +   K+I KLAKG+RGRA +C R+A E+VEKALQY+YRDRRN+KRD R LWIQRINA  R+HG+ Y  FM  L K  I ++RKVL+EL+++    F ++V+
Sbjct:    8 KISKNRHKKILKLAKGYRGRANSCFRVAIEKVEKALQYAYRDRRNRKRDFRGLWIQRINAAVREHGLVYSQFMGALKKTEIDIDRKVLAELAVNNSDGFVSIVE 111          
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_PARL1 (50S ribosomal protein L20 OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) GN=rplT PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.324e-27
Identity = 57/102 (55.88%), Postives = 79/102 (77.45%), Query Frame = -3
Query:  320 KEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNA 625
            ++I K AKG+ GR KN  R A + VEKA QY+YRDRR +KR+ R+LWIQRINAG R+HG+ Y  F+ GL K  I+++RKVLS++++HEP +FKALV+ ++ A
Sbjct:   15 RKIIKKAKGYYGRRKNAFRTANQAVEKAGQYAYRDRRTRKRNFRALWIQRINAGVREHGLTYSRFIDGLAKAGIEVDRKVLSDIAIHEPEAFKALVEQAQAA 116          
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_RICRS (50S ribosomal protein L20 OS=Rickettsia rickettsii (strain Sheila Smith) GN=rplT PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.729e-27
Identity = 58/104 (55.77%), Postives = 77/104 (74.04%), Query Frame = -3
Query:  335 KRERMNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVD 646
            K  +   K+I KLAKG+RGRA +C R+A E+VEKALQY+YRDRRN+KRD R LWIQRINA  R+HG+ Y  FM  L K  I ++RKVL+EL+++    F ++V+
Sbjct:    8 KISKNRHKKILKLAKGYRGRANSCFRVAIEKVEKALQYAYRDRRNRKRDFRGLWIQRINAAVREHGLVYSQFMGALKKTEIAIDRKVLAELAVNNSDGFVSIVE 111          
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_RICRO (50S ribosomal protein L20 OS=Rickettsia rickettsii (strain Iowa) GN=rplT PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.729e-27
Identity = 58/104 (55.77%), Postives = 77/104 (74.04%), Query Frame = -3
Query:  335 KRERMNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVD 646
            K  +   K+I KLAKG+RGRA +C R+A E+VEKALQY+YRDRRN+KRD R LWIQRINA  R+HG+ Y  FM  L K  I ++RKVL+EL+++    F ++V+
Sbjct:    8 KISKNRHKKILKLAKGYRGRANSCFRVAIEKVEKALQYAYRDRRNRKRDFRGLWIQRINAAVREHGLVYSQFMGALKKTEIAIDRKVLAELAVNNSDGFVSIVE 111          
The following BLAST results are available for this feature:
BLAST of CX298468 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL20_MAGSM2.668e-2857.8450S ribosomal protein L20 OS=Magnetococcus sp. (st... [more]
RL20_METC43.484e-2853.8550S ribosomal protein L20 OS=Methylobacterium chlo... [more]
RL20_RICPR5.943e-2855.1450S ribosomal protein L20 OS=Rickettsia prowazekii... [more]
RL20_RICM51.324e-2755.0550S ribosomal protein L20 OS=Rickettsia massiliae ... [more]
RL20_RICFE1.324e-2754.8150S ribosomal protein L20 OS=Rickettsia felis GN=r... [more]
RL20_RICCN1.324e-2755.7750S ribosomal protein L20 OS=Rickettsia conorii GN... [more]
RL20_RICAE1.324e-2755.7750S ribosomal protein L20 OS=Rickettsia africae (s... [more]
RL20_PARL11.324e-2755.8850S ribosomal protein L20 OS=Parvibaculum lavament... [more]
RL20_RICRS1.729e-2755.7750S ribosomal protein L20 OS=Rickettsia rickettsii... [more]
RL20_RICRO1.729e-2755.7750S ribosomal protein L20 OS=Rickettsia rickettsii... [more]

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Properties
Property NameValue
Genbank descriptionC06012E06SK RindPdig24 Citrus clementina cDNA clone C06012E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298468 ID=CX298468; Name=CX298468; organism=Citrus clementina; type=EST; length=714bp
TTTTTTTTTGATATAACCACATCGCTATTCTTAGATAAGAAAAAGCTCAA
CCTTAACATGCAAGACATGAAGACAATCAGGAAACTTGCAATATCTGATT
TCAAACATTATCAACCACAAAGGTACTTATCAGTGTTGACCCTCAATTCT
TTACAAAACACATAAGCAGTCTAACTGTGTTCGCCATGACGCATCCCTTG
CATTCCAGTAATATTAAAATACTAAAGAATGCAATATTCGGGTCACTAAT
TACTAACTACGCATTGATTGAAATGTCAGCCTTTCTGGGAGGATGCACAA
TATTTTTGTTTCCAGGGAAGGCATTGCGAGAGATGTCTACAAGGGCCTTG
AAACTATATGGTTCATGCATCGACAGCTCTGACAGAACTTTCCTGTTCAG
TTGGATGTTCTCCTTCATCAGTCCATGCATAAAGTTACCATAGTTAACGC
CGTGTTGGCGAGTGCCGGCGTTGATGCGTTGAATCCAAAGGGAGCGCATG
TCACGCTTCTTGTTGCGGCGGTCTCTGTAGGAATACTGCAATGCTTTCTC
CACTCTCTCTCTTGCTATTCTTATGCAATTTTTCGCTCTTCCTCTGAACC
CCTTTGCCAGCTTAAATATCTCCTTCTTGTTCATCCTTTCTCTCTTTTCT
TTAATCCTTAAACAATGATGAATTCGTTCCTTCGATTCTCACTCTTCTCT
TCTCCTCTCTTCTC
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