CX298468
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_MAGSM (50S ribosomal protein L20 OS=Magnetococcus sp. (strain MC-1) GN=rplT PE=3 SV=1) HSP 1 Score: 125.561 bits (314), Expect = 2.668e-28 Identity = 59/102 (57.84%), Postives = 79/102 (77.45%), Query Frame = -3 Query: 320 KEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNA 625 K++ K AKG+ GR +C RIA+++VEK LQY+YRDR+N KR+MR LWI RINA TR HG++Y FM+GL K I+L+RKVLSEL++ EP SF LV+ ++ A Sbjct: 15 KKVLKAAKGYTGRNNSCFRIAKQKVEKGLQYAYRDRKNLKREMRRLWIARINAATRLHGMSYSQFMNGLNKAGIELDRKVLSELAISEPESFGTLVEQAKAA 116
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_METC4 (50S ribosomal protein L20 OS=Methylobacterium chloromethanicum (strain CM4 / NCIMB 13688) GN=rplT PE=3 SV=1) HSP 1 Score: 125.176 bits (313), Expect = 3.484e-28 Identity = 56/104 (53.85%), Postives = 80/104 (76.92%), Query Frame = -3 Query: 314 KEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNAFP 625 K++ K AKG+ GR KN IRIA++ VEK LQY+YRDR+NKKR R+LWIQR+NA R+HG+ Y F++ L + I+++RK LSEL++HEP +F A+V +++A P Sbjct: 15 KKVLKAAKGYYGRRKNTIRIAKQAVEKGLQYAYRDRKNKKRTFRALWIQRLNAAVREHGLTYSRFINALAQSGIEVDRKALSELAIHEPAAFAAVVAKAKSALP 118
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_RICPR (50S ribosomal protein L20 OS=Rickettsia prowazekii GN=rplT PE=3 SV=1) HSP 1 Score: 124.405 bits (311), Expect = 5.943e-28 Identity = 59/107 (55.14%), Postives = 77/107 (71.96%), Query Frame = -3 Query: 326 KRERMNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISR 646 K + K+I KLAKG+RGRA NC R+A E+VEK LQY+YRDRRN+KRD R LWIQRINA R+HG+ Y FM L K I ++RKVL+EL+++ F ++V S+ Sbjct: 8 KISKKRHKKILKLAKGYRGRANNCFRVAIEKVEKGLQYAYRDRRNRKRDFRGLWIQRINAAVREHGLIYSQFMGALKKAGINIDRKVLAELAVNNNDGFASIVQQSK 114
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_RICM5 (50S ribosomal protein L20 OS=Rickettsia massiliae (strain Mtu5) GN=rplT PE=3 SV=1) HSP 1 Score: 123.25 bits (308), Expect = 1.324e-27 Identity = 60/109 (55.05%), Postives = 80/109 (73.39%), Query Frame = -3 Query: 335 RIKEKRERMNK-KEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVD 658 R+K + N+ K+I KLAKG+RGRA +C R+A E+VEKALQY+YRDRRN+KRD R LWIQRINA R+H + Y FM L K I +NRKVL+EL+++ F ++V+ Sbjct: 3 RVKSGKISKNRHKKILKLAKGYRGRANSCFRVAIEKVEKALQYAYRDRRNRKRDFRGLWIQRINAAVREHELVYSQFMGALKKAGIDINRKVLAELAVNNSDGFVSIVE 111
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_RICFE (50S ribosomal protein L20 OS=Rickettsia felis GN=rplT PE=3 SV=1) HSP 1 Score: 123.25 bits (308), Expect = 1.324e-27 Identity = 57/104 (54.81%), Postives = 77/104 (74.04%), Query Frame = -3 Query: 335 KRERMNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVD 646 K + K+I KLAKG+RGRA +C R+A E+VEKALQY+YRDRRN+KRD R LWIQRINA R+HG+ Y FM L K I ++RKVL+EL+++ F ++++ Sbjct: 8 KISKNRHKKILKLAKGYRGRANSCFRVAIEKVEKALQYAYRDRRNRKRDFRGLWIQRINAAVREHGLVYSQFMGALKKAEIDIDRKVLAELAVNNSDGFASIIE 111
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_RICCN (50S ribosomal protein L20 OS=Rickettsia conorii GN=rplT PE=3 SV=1) HSP 1 Score: 123.25 bits (308), Expect = 1.324e-27 Identity = 58/104 (55.77%), Postives = 77/104 (74.04%), Query Frame = -3 Query: 335 KRERMNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVD 646 K + K+I KLAKG+RGRA +C R+A E+VEKALQY+YRDRRN+KRD R LWIQRINA R+HG+ Y FM L K I ++RKVL+EL+++ F ++V+ Sbjct: 8 KISKNRHKKILKLAKGYRGRANSCFRVAIEKVEKALQYAYRDRRNRKRDFRGLWIQRINAAVREHGLVYSQFMGALKKTEIDIDRKVLAELAVNNSDGFVSIVE 111
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_RICAE (50S ribosomal protein L20 OS=Rickettsia africae (strain ESF-5) GN=rplT PE=3 SV=1) HSP 1 Score: 123.25 bits (308), Expect = 1.324e-27 Identity = 58/104 (55.77%), Postives = 77/104 (74.04%), Query Frame = -3 Query: 335 KRERMNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVD 646 K + K+I KLAKG+RGRA +C R+A E+VEKALQY+YRDRRN+KRD R LWIQRINA R+HG+ Y FM L K I ++RKVL+EL+++ F ++V+ Sbjct: 8 KISKNRHKKILKLAKGYRGRANSCFRVAIEKVEKALQYAYRDRRNRKRDFRGLWIQRINAAVREHGLVYSQFMGALKKTEIDIDRKVLAELAVNNSDGFVSIVE 111
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_PARL1 (50S ribosomal protein L20 OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) GN=rplT PE=3 SV=1) HSP 1 Score: 123.25 bits (308), Expect = 1.324e-27 Identity = 57/102 (55.88%), Postives = 79/102 (77.45%), Query Frame = -3 Query: 320 KEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNA 625 ++I K AKG+ GR KN R A + VEKA QY+YRDRR +KR+ R+LWIQRINAG R+HG+ Y F+ GL K I+++RKVLS++++HEP +FKALV+ ++ A Sbjct: 15 RKIIKKAKGYYGRRKNAFRTANQAVEKAGQYAYRDRRTRKRNFRALWIQRINAGVREHGLTYSRFIDGLAKAGIEVDRKVLSDIAIHEPEAFKALVEQAQAA 116
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_RICRS (50S ribosomal protein L20 OS=Rickettsia rickettsii (strain Sheila Smith) GN=rplT PE=3 SV=1) HSP 1 Score: 122.865 bits (307), Expect = 1.729e-27 Identity = 58/104 (55.77%), Postives = 77/104 (74.04%), Query Frame = -3 Query: 335 KRERMNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVD 646 K + K+I KLAKG+RGRA +C R+A E+VEKALQY+YRDRRN+KRD R LWIQRINA R+HG+ Y FM L K I ++RKVL+EL+++ F ++V+ Sbjct: 8 KISKNRHKKILKLAKGYRGRANSCFRVAIEKVEKALQYAYRDRRNRKRDFRGLWIQRINAAVREHGLVYSQFMGALKKTEIAIDRKVLAELAVNNSDGFVSIVE 111
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_RICRO (50S ribosomal protein L20 OS=Rickettsia rickettsii (strain Iowa) GN=rplT PE=3 SV=1) HSP 1 Score: 122.865 bits (307), Expect = 1.729e-27 Identity = 58/104 (55.77%), Postives = 77/104 (74.04%), Query Frame = -3 Query: 335 KRERMNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVD 646 K + K+I KLAKG+RGRA +C R+A E+VEKALQY+YRDRRN+KRD R LWIQRINA R+HG+ Y FM L K I ++RKVL+EL+++ F ++V+ Sbjct: 8 KISKNRHKKILKLAKGYRGRANSCFRVAIEKVEKALQYAYRDRRNRKRDFRGLWIQRINAAVREHGLVYSQFMGALKKTEIAIDRKVLAELAVNNSDGFVSIVE 111 The following BLAST results are available for this feature:
BLAST of CX298468 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX298468 ID=CX298468; Name=CX298468; organism=Citrus clementina; type=EST; length=714bpback to top |