CX298468

Overview
NameCX298468
Unique NameCX298468
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length714
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_AZOC5 (50S ribosomal protein L20 OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) GN=rplT PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.949e-27
Identity = 57/102 (55.88%), Postives = 80/102 (78.43%), Query Frame = -3
Query:  320 KEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNA 625
            K++FK AKGF GR KN IR A+  VE+++QY+YRDR+ KKR  R+LWIQRINAG R+ G+ YG F+ GL K  I+++RKVLS++++HEP + KALV+ ++ A
Sbjct:   15 KKVFKAAKGFYGRRKNTIRAAKSAVERSMQYNYRDRKVKKRTFRALWIQRINAGVRELGMTYGRFIDGLGKAGIEVDRKVLSDIAVHEPETLKALVEKAQAA 116          
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_RICPU (50S ribosomal protein L20 OS=Rickettsia peacockii (strain Rustic) GN=rplT PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.852e-27
Identity = 57/104 (54.81%), Postives = 76/104 (73.08%), Query Frame = -3
Query:  335 KRERMNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVD 646
            K  +   K+I K AKG+RGRA +C R+A E+VEKALQY+YRDRRN+KRD R LWIQRINA  R+HG+ Y  FM  L K  I ++RKVL+EL+++    F ++V+
Sbjct:    8 KISKNRHKKILKFAKGYRGRANSCFRVAIEKVEKALQYAYRDRRNRKRDFRGLWIQRINAAVREHGLVYSQFMGALKKTEIDIDRKVLAELAVNNSDGFVSIVE 111          
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_RICBR (50S ribosomal protein L20 OS=Rickettsia bellii (strain RML369-C) GN=rplT PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.852e-27
Identity = 57/104 (54.81%), Postives = 75/104 (72.12%), Query Frame = -3
Query:  335 KRERMNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVD 646
            K  +   K+I KLAKG+RGRA  C R+A E+VEK LQY+YRDRRN+KRD R LWIQRINA  R+HG+ Y  FM  L K  I ++RKVL+EL+++    F ++V+
Sbjct:    8 KISKNRHKKILKLAKGYRGRASTCFRVAIEKVEKGLQYAYRDRRNRKRDFRGLWIQRINAAVREHGLVYSQFMGALKKAEIDIDRKVLAELAVNNNEEFASIVE 111          
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_RICB8 (50S ribosomal protein L20 OS=Rickettsia bellii (strain OSU 85-389) GN=rplT PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.852e-27
Identity = 57/104 (54.81%), Postives = 75/104 (72.12%), Query Frame = -3
Query:  335 KRERMNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVD 646
            K  +   K+I KLAKG+RGRA  C R+A E+VEK LQY+YRDRRN+KRD R LWIQRINA  R+HG+ Y  FM  L K  I ++RKVL+EL+++    F ++V+
Sbjct:    8 KISKNRHKKILKLAKGYRGRASTCFRVAIEKVEKGLQYAYRDRRNRKRDFRGLWIQRINAAVREHGLVYSQFMGALKKAEIDIDRKVLAELAVNNNEEFASIVE 111          
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_RICTY (50S ribosomal protein L20 OS=Rickettsia typhi GN=rplT PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.031e-27
Identity = 58/107 (54.21%), Postives = 77/107 (71.96%), Query Frame = -3
Query:  326 KRERMNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISR 646
            K  +   K+I KLAKG+RGRA +C R+A E+VEKAL Y+YRDRRN+KRD R LWIQRINA  R+HG+ Y  FM  L K  I ++RKVL+EL+++    F ++V  S+
Sbjct:    8 KISKKRHKKILKLAKGYRGRANSCFRVAIEKVEKALLYAYRDRRNRKRDFRGLWIQRINAAVREHGLIYSQFMGALKKAGINIDRKVLAELAVNNNDGFTSIVQQSK 114          
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_RICAH (50S ribosomal protein L20 OS=Rickettsia akari (strain Hartford) GN=rplT PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.031e-27
Identity = 57/104 (54.81%), Postives = 76/104 (73.08%), Query Frame = -3
Query:  335 KRERMNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVD 646
            K  +   K+I KLAKG+RGRA +C R+A E+VEKALQY+YRDRRN+KRD R LWIQRINA  R+HG  Y  F+  L K  I ++RKVL+EL+++    F ++V+
Sbjct:    8 KISKNRHKKILKLAKGYRGRANSCFRVAIEKVEKALQYAYRDRRNRKRDFRGLWIQRINAAVREHGFVYSQFIGALKKAEIDIDRKVLAELAVNNSDGFASIVE 111          
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_ERYLH (50S ribosomal protein L20 OS=Erythrobacter litoralis (strain HTCC2594) GN=rplT PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.571e-27
Identity = 57/108 (52.78%), Postives = 78/108 (72.22%), Query Frame = -3
Query:  314 RMNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNAFP 637
            R   K +   AKG+RGR KN IRIAR+ VEKA QY+YRDR+ KKR  R+LWIQRINA  R  G+ Y  FMHG+    I+L+RKV+++L+M+E  +FK+++D ++ A P
Sbjct:   11 RQKHKRLLDQAKGYRGRRKNTIRIARQAVEKAGQYAYRDRKVKKRSFRALWIQRINAAVRAEGLTYSQFMHGVKLAGIELDRKVMADLAMNEEAAFKSVIDQAKAALP 118          
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_DEIRA (50S ribosomal protein L20 OS=Deinococcus radiodurans GN=rplT PE=1 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.571e-27
Identity = 60/106 (56.60%), Postives = 73/106 (68.87%), Query Frame = -3
Query:  320 RMNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNA 637
            R   K++ K AKGF G      R A + +  A  Y YRDRRNKKRD R LWIQRINAG R HG+NY  F++GL + NI LNRKVL++++  EP +FKALVD SRNA
Sbjct:   11 RRRHKKVLKRAKGFWGSRSKQYRNAFQTLLNAATYEYRDRRNKKRDFRRLWIQRINAGARLHGMNYSTFINGLKRANIDLNRKVLADIAAREPEAFKALVDASRNA 116          
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_RALPJ (50S ribosomal protein L20 OS=Ralstonia pickettii (strain 12J) GN=rplT PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.912e-26
Identity = 55/101 (54.46%), Postives = 76/101 (75.25%), Query Frame = -3
Query:  335 RMNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVD 637
            R   K++   AKGFRGR  N  RIA++ V +A QY+YRDRRNKKR  R+LWI RINAG R+HG+ Y  FM+GL K +I+L+RKVLS++++H+  +F A+V+
Sbjct:   11 RARHKKVISAAKGFRGRRNNVYRIAKQAVMRAGQYAYRDRRNKKRVFRALWIARINAGAREHGLTYSKFMNGLKKASIELDRKVLSDMAIHDKVAFAAIVN 111          
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_BRUSU (50S ribosomal protein L20 OS=Brucella suis GN=rplT PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.912e-26
Identity = 56/112 (50.00%), Postives = 79/112 (70.54%), Query Frame = -3
Query:  290 KEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNAFPGNKNIVHP 625
            K++   A GFRGR KN IR A+  V+++ QY+YRDR+N+KR  R+LWIQRINA  R+ G+ YG F+ GL K  I+++RKVLS++++HEP +F ALV  ++ A    KN   P
Sbjct:   15 KKVLDQAAGFRGRRKNTIRTAKAAVDRSKQYAYRDRKNRKRSFRALWIQRINAAVREQGLTYGRFIDGLAKAGIEIDRKVLSDIAIHEPEAFAALVASAKKALEYLKNTSMP 126          
The following BLAST results are available for this feature:
BLAST of CX298468 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL20_AZOC52.949e-2755.8850S ribosomal protein L20 OS=Azorhizobium caulinod... [more]
RL20_RICPU3.852e-2754.8150S ribosomal protein L20 OS=Rickettsia peacockii ... [more]
RL20_RICBR3.852e-2754.8150S ribosomal protein L20 OS=Rickettsia bellii (st... [more]
RL20_RICB83.852e-2754.8150S ribosomal protein L20 OS=Rickettsia bellii (st... [more]
RL20_RICTY5.031e-2754.2150S ribosomal protein L20 OS=Rickettsia typhi GN=r... [more]
RL20_RICAH5.031e-2754.8150S ribosomal protein L20 OS=Rickettsia akari (str... [more]
RL20_ERYLH6.571e-2752.7850S ribosomal protein L20 OS=Erythrobacter litoral... [more]
RL20_DEIRA6.571e-2756.6050S ribosomal protein L20 OS=Deinococcus radiodura... [more]
RL20_RALPJ1.912e-2654.4650S ribosomal protein L20 OS=Ralstonia pickettii (... [more]
RL20_BRUSU1.912e-2650.0050S ribosomal protein L20 OS=Brucella suis GN=rplT... [more]

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Properties
Property NameValue
Genbank descriptionC06012E06SK RindPdig24 Citrus clementina cDNA clone C06012E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX298468 ID=CX298468; Name=CX298468; organism=Citrus clementina; type=EST; length=714bp
TTTTTTTTTGATATAACCACATCGCTATTCTTAGATAAGAAAAAGCTCAA
CCTTAACATGCAAGACATGAAGACAATCAGGAAACTTGCAATATCTGATT
TCAAACATTATCAACCACAAAGGTACTTATCAGTGTTGACCCTCAATTCT
TTACAAAACACATAAGCAGTCTAACTGTGTTCGCCATGACGCATCCCTTG
CATTCCAGTAATATTAAAATACTAAAGAATGCAATATTCGGGTCACTAAT
TACTAACTACGCATTGATTGAAATGTCAGCCTTTCTGGGAGGATGCACAA
TATTTTTGTTTCCAGGGAAGGCATTGCGAGAGATGTCTACAAGGGCCTTG
AAACTATATGGTTCATGCATCGACAGCTCTGACAGAACTTTCCTGTTCAG
TTGGATGTTCTCCTTCATCAGTCCATGCATAAAGTTACCATAGTTAACGC
CGTGTTGGCGAGTGCCGGCGTTGATGCGTTGAATCCAAAGGGAGCGCATG
TCACGCTTCTTGTTGCGGCGGTCTCTGTAGGAATACTGCAATGCTTTCTC
CACTCTCTCTCTTGCTATTCTTATGCAATTTTTCGCTCTTCCTCTGAACC
CCTTTGCCAGCTTAAATATCTCCTTCTTGTTCATCCTTTCTCTCTTTTCT
TTAATCCTTAAACAATGATGAATTCGTTCCTTCGATTCTCACTCTTCTCT
TCTCCTCTCTTCTC
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