CX298468
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_AZOC5 (50S ribosomal protein L20 OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) GN=rplT PE=3 SV=1) HSP 1 Score: 122.094 bits (305), Expect = 2.949e-27 Identity = 57/102 (55.88%), Postives = 80/102 (78.43%), Query Frame = -3 Query: 320 KEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNA 625 K++FK AKGF GR KN IR A+ VE+++QY+YRDR+ KKR R+LWIQRINAG R+ G+ YG F+ GL K I+++RKVLS++++HEP + KALV+ ++ A Sbjct: 15 KKVFKAAKGFYGRRKNTIRAAKSAVERSMQYNYRDRKVKKRTFRALWIQRINAGVRELGMTYGRFIDGLGKAGIEVDRKVLSDIAVHEPETLKALVEKAQAA 116
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_RICPU (50S ribosomal protein L20 OS=Rickettsia peacockii (strain Rustic) GN=rplT PE=3 SV=1) HSP 1 Score: 121.709 bits (304), Expect = 3.852e-27 Identity = 57/104 (54.81%), Postives = 76/104 (73.08%), Query Frame = -3 Query: 335 KRERMNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVD 646 K + K+I K AKG+RGRA +C R+A E+VEKALQY+YRDRRN+KRD R LWIQRINA R+HG+ Y FM L K I ++RKVL+EL+++ F ++V+ Sbjct: 8 KISKNRHKKILKFAKGYRGRANSCFRVAIEKVEKALQYAYRDRRNRKRDFRGLWIQRINAAVREHGLVYSQFMGALKKTEIDIDRKVLAELAVNNSDGFVSIVE 111
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_RICBR (50S ribosomal protein L20 OS=Rickettsia bellii (strain RML369-C) GN=rplT PE=3 SV=1) HSP 1 Score: 121.709 bits (304), Expect = 3.852e-27 Identity = 57/104 (54.81%), Postives = 75/104 (72.12%), Query Frame = -3 Query: 335 KRERMNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVD 646 K + K+I KLAKG+RGRA C R+A E+VEK LQY+YRDRRN+KRD R LWIQRINA R+HG+ Y FM L K I ++RKVL+EL+++ F ++V+ Sbjct: 8 KISKNRHKKILKLAKGYRGRASTCFRVAIEKVEKGLQYAYRDRRNRKRDFRGLWIQRINAAVREHGLVYSQFMGALKKAEIDIDRKVLAELAVNNNEEFASIVE 111
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_RICB8 (50S ribosomal protein L20 OS=Rickettsia bellii (strain OSU 85-389) GN=rplT PE=3 SV=1) HSP 1 Score: 121.709 bits (304), Expect = 3.852e-27 Identity = 57/104 (54.81%), Postives = 75/104 (72.12%), Query Frame = -3 Query: 335 KRERMNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVD 646 K + K+I KLAKG+RGRA C R+A E+VEK LQY+YRDRRN+KRD R LWIQRINA R+HG+ Y FM L K I ++RKVL+EL+++ F ++V+ Sbjct: 8 KISKNRHKKILKLAKGYRGRASTCFRVAIEKVEKGLQYAYRDRRNRKRDFRGLWIQRINAAVREHGLVYSQFMGALKKAEIDIDRKVLAELAVNNNEEFASIVE 111
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_RICTY (50S ribosomal protein L20 OS=Rickettsia typhi GN=rplT PE=3 SV=1) HSP 1 Score: 121.324 bits (303), Expect = 5.031e-27 Identity = 58/107 (54.21%), Postives = 77/107 (71.96%), Query Frame = -3 Query: 326 KRERMNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISR 646 K + K+I KLAKG+RGRA +C R+A E+VEKAL Y+YRDRRN+KRD R LWIQRINA R+HG+ Y FM L K I ++RKVL+EL+++ F ++V S+ Sbjct: 8 KISKKRHKKILKLAKGYRGRANSCFRVAIEKVEKALLYAYRDRRNRKRDFRGLWIQRINAAVREHGLIYSQFMGALKKAGINIDRKVLAELAVNNNDGFTSIVQQSK 114
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_RICAH (50S ribosomal protein L20 OS=Rickettsia akari (strain Hartford) GN=rplT PE=3 SV=1) HSP 1 Score: 121.324 bits (303), Expect = 5.031e-27 Identity = 57/104 (54.81%), Postives = 76/104 (73.08%), Query Frame = -3 Query: 335 KRERMNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVD 646 K + K+I KLAKG+RGRA +C R+A E+VEKALQY+YRDRRN+KRD R LWIQRINA R+HG Y F+ L K I ++RKVL+EL+++ F ++V+ Sbjct: 8 KISKNRHKKILKLAKGYRGRANSCFRVAIEKVEKALQYAYRDRRNRKRDFRGLWIQRINAAVREHGFVYSQFIGALKKAEIDIDRKVLAELAVNNSDGFASIVE 111
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_ERYLH (50S ribosomal protein L20 OS=Erythrobacter litoralis (strain HTCC2594) GN=rplT PE=3 SV=1) HSP 1 Score: 120.939 bits (302), Expect = 6.571e-27 Identity = 57/108 (52.78%), Postives = 78/108 (72.22%), Query Frame = -3 Query: 314 RMNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNAFP 637 R K + AKG+RGR KN IRIAR+ VEKA QY+YRDR+ KKR R+LWIQRINA R G+ Y FMHG+ I+L+RKV+++L+M+E +FK+++D ++ A P Sbjct: 11 RQKHKRLLDQAKGYRGRRKNTIRIARQAVEKAGQYAYRDRKVKKRSFRALWIQRINAAVRAEGLTYSQFMHGVKLAGIELDRKVMADLAMNEEAAFKSVIDQAKAALP 118
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_DEIRA (50S ribosomal protein L20 OS=Deinococcus radiodurans GN=rplT PE=1 SV=1) HSP 1 Score: 120.939 bits (302), Expect = 6.571e-27 Identity = 60/106 (56.60%), Postives = 73/106 (68.87%), Query Frame = -3 Query: 320 RMNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNA 637 R K++ K AKGF G R A + + A Y YRDRRNKKRD R LWIQRINAG R HG+NY F++GL + NI LNRKVL++++ EP +FKALVD SRNA Sbjct: 11 RRRHKKVLKRAKGFWGSRSKQYRNAFQTLLNAATYEYRDRRNKKRDFRRLWIQRINAGARLHGMNYSTFINGLKRANIDLNRKVLADIAAREPEAFKALVDASRNA 116
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_RALPJ (50S ribosomal protein L20 OS=Ralstonia pickettii (strain 12J) GN=rplT PE=3 SV=1) HSP 1 Score: 119.398 bits (298), Expect = 1.912e-26 Identity = 55/101 (54.46%), Postives = 76/101 (75.25%), Query Frame = -3 Query: 335 RMNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVD 637 R K++ AKGFRGR N RIA++ V +A QY+YRDRRNKKR R+LWI RINAG R+HG+ Y FM+GL K +I+L+RKVLS++++H+ +F A+V+ Sbjct: 11 RARHKKVISAAKGFRGRRNNVYRIAKQAVMRAGQYAYRDRRNKKRVFRALWIARINAGAREHGLTYSKFMNGLKKASIELDRKVLSDMAIHDKVAFAAIVN 111
BLAST of CX298468 vs. ExPASy Swiss-Prot
Match: RL20_BRUSU (50S ribosomal protein L20 OS=Brucella suis GN=rplT PE=3 SV=1) HSP 1 Score: 119.398 bits (298), Expect = 1.912e-26 Identity = 56/112 (50.00%), Postives = 79/112 (70.54%), Query Frame = -3 Query: 290 KEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNAFPGNKNIVHP 625 K++ A GFRGR KN IR A+ V+++ QY+YRDR+N+KR R+LWIQRINA R+ G+ YG F+ GL K I+++RKVLS++++HEP +F ALV ++ A KN P Sbjct: 15 KKVLDQAAGFRGRRKNTIRTAKAAVDRSKQYAYRDRKNRKRSFRALWIQRINAAVREQGLTYGRFIDGLAKAGIEIDRKVLSDIAIHEPEAFAALVASAKKALEYLKNTSMP 126 The following BLAST results are available for this feature:
BLAST of CX298468 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX298468 ID=CX298468; Name=CX298468; organism=Citrus clementina; type=EST; length=714bpback to top |